Wall clock time and date at job start Mon Mar 30 2020 05:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30775 * 1 3 3 Si 1.86794 * 120.00132 * 2 1 4 4 H 1.48502 * 109.47400 * 274.70053 * 3 2 1 5 5 H 1.48504 * 109.47285 * 34.70144 * 3 2 1 6 6 H 1.48507 * 109.47085 * 154.69960 * 3 2 1 7 7 C 1.40047 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00484 * 163.25388 * 7 2 1 9 9 C 1.41077 * 120.00180 * 343.25082 * 7 2 1 10 10 C 1.41147 * 121.07606 * 335.66519 * 9 7 2 11 11 C 1.36431 * 119.10069 * 179.97438 * 10 9 7 12 12 N 1.32205 * 121.44383 * 0.02562 * 11 10 9 13 13 C 1.31809 * 122.43318 * 359.67693 * 12 11 10 14 14 Br 1.89098 * 119.66226 * 180.29410 * 13 12 11 15 15 C 1.39091 * 120.67947 * 0.58821 * 13 12 11 16 16 N 1.38732 * 120.75129 * 179.72798 * 15 13 12 17 17 H 0.96999 * 119.99780 * 0.02562 * 1 2 3 18 18 H 1.07995 * 120.45189 * 0.02562 * 10 9 7 19 19 H 1.08001 * 119.27561 * 180.02562 * 11 10 9 20 20 H 0.97002 * 119.99984 * 179.71872 * 16 15 13 21 21 H 0.97005 * 119.99528 * 359.45104 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.3899 2.1038 -1.3954 5 1 1.4925 2.6219 0.7971 6 1 3.5855 1.4134 0.5984 7 6 2.0080 -1.2129 -0.0005 8 1 3.0536 -1.2327 -0.2700 9 6 1.3475 -2.4089 0.3510 10 6 0.1970 -2.3926 1.1686 11 6 -0.4102 -3.5732 1.4832 12 7 0.0560 -4.7281 1.0397 13 6 1.1217 -4.8111 0.2685 14 35 1.7156 -6.5043 -0.3280 15 6 1.8176 -3.6664 -0.1059 16 7 2.9428 -3.7525 -0.9129 17 1 -0.4850 0.8401 -0.0004 18 1 -0.1978 -1.4583 1.5394 19 1 -1.2909 -3.5640 2.1082 20 1 3.4174 -2.9468 -1.1708 21 1 3.2571 -4.6187 -1.2160 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306373110.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:07 Heat of formation + Delta-G solvation = 19.289392 kcal Electronic energy + Delta-G solvation = -10200.820354 eV Core-core repulsion = 8122.073169 eV Total energy + Delta-G solvation = -2078.747185 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.56791 -34.33910 -33.77884 -30.99667 -29.36525 -27.50266 -25.84737 -21.54849 -21.08420 -17.49729 -16.48130 -15.77559 -14.96706 -14.41036 -13.55573 -13.05467 -12.75518 -12.43344 -11.58895 -11.40465 -11.10310 -10.48217 -10.20417 -10.04776 -9.94180 -9.55974 -9.31892 -8.16172 -7.89156 -6.96291 -6.62307 -4.49733 2.55622 2.58910 2.75414 2.98869 3.02334 3.13327 3.80587 4.53652 5.00181 5.50015 6.03130 6.41729 6.62906 6.85664 6.96287 7.30797 7.57671 7.82644 8.15751 8.47028 8.56062 8.71210 8.83166 9.40820 10.02894 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.056816 B = 0.008257 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.701704 B = 3390.152823 C = 3810.468565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.452 4.452 8 H 0.079 0.921 9 C 0.090 3.910 10 C -0.188 4.188 11 C 0.064 3.936 12 N -0.524 5.524 13 C 0.052 3.948 14 Br -0.081 7.081 15 C 0.111 3.889 16 N -0.871 5.871 17 H 0.283 0.717 18 H 0.131 0.869 19 H 0.125 0.875 20 H 0.395 0.605 21 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 -3.853 -1.132 5.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.484 4.484 8 H 0.097 0.903 9 C 0.078 3.922 10 C -0.213 4.213 11 C -0.094 4.094 12 N -0.239 5.239 13 C -0.164 4.164 14 Br 0.002 6.998 15 C 0.002 3.998 16 N -0.414 5.414 17 H 0.095 0.905 18 H 0.149 0.851 19 H 0.143 0.857 20 H 0.224 0.776 21 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 3.271 -5.129 -1.094 6.181 hybrid contribution 0.809 1.897 -0.361 2.093 sum 4.080 -3.232 -1.455 5.405 Atomic orbital electron populations 1.69768 1.07623 1.29569 1.34133 1.25872 0.94772 1.01333 0.92208 0.86240 0.80657 0.80416 0.79120 1.19521 1.19876 1.18392 1.19183 0.97423 0.90619 1.41218 0.90272 1.17463 0.93233 0.89783 0.91737 1.21733 0.99664 0.98402 1.01467 1.21482 0.99461 0.87758 1.00670 1.66714 1.13236 1.29439 1.14502 1.21273 1.00133 0.87099 1.07846 1.96373 1.88087 1.26878 1.88490 1.18541 0.91543 0.93197 0.96554 1.41980 1.30993 1.10070 1.58330 0.90542 0.85113 0.85726 0.77637 0.78638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.10 10.95 55.55 0.61 -18.49 14 2 C 0.08 1.82 5.20 -17.32 -0.09 1.73 14 3 Si 0.91 17.45 29.59 -169.99 -5.03 12.42 14 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 14 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 14 6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 14 7 C -0.45 -11.07 8.60 -37.83 -0.33 -11.39 14 8 H 0.08 1.81 6.77 -52.49 -0.36 1.45 14 9 C 0.09 2.28 5.61 -106.35 -0.60 1.69 14 10 C -0.19 -4.73 8.73 -39.13 -0.34 -5.07 14 11 C 0.06 1.54 11.09 -18.04 -0.20 1.34 14 12 N -0.52 -12.96 10.29 -11.84 -0.12 -13.08 14 13 C 0.05 1.24 7.20 -17.25 -0.12 1.11 14 14 Br -0.08 -1.56 32.32 -68.01 -2.20 -3.76 14 15 C 0.11 2.65 6.82 -83.06 -0.57 2.08 14 16 N -0.87 -17.29 8.94 32.84 0.29 -17.00 14 17 H 0.28 6.26 8.29 -40.82 -0.34 5.92 14 18 H 0.13 3.30 6.23 -52.49 -0.33 2.97 14 19 H 0.13 2.61 8.06 -52.49 -0.42 2.19 14 20 H 0.39 7.35 7.19 -40.82 -0.29 7.06 14 21 H 0.39 6.83 7.26 -40.82 -0.30 6.54 14 LS Contribution 210.44 15.07 3.17 3.17 Total: -1.00 -26.82 210.44 -6.35 -33.17 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -0.83 Total: 12.08 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.24 Total: -8.51 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.78 Total: -48.57 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Atomic # 35 Polarization: -1.56 SS G_CDS: -2.20 Total: -3.76 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -26.82 -6.35 -33.17 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306373110.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.459 kcal (2) G-P(sol) polarization free energy of solvation -26.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds