Wall clock time and date at job start Mon Mar 30 2020 05:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48499 * 109.47464 * 85.60936 * 3 2 1 5 5 H 1.48498 * 109.47340 * 205.61109 * 3 2 1 6 6 H 1.48503 * 109.46995 * 325.60848 * 3 2 1 7 7 C 1.39927 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00159 * 18.28275 * 7 2 1 9 9 C 1.41067 * 119.99937 * 198.27922 * 7 2 1 10 10 C 1.41960 * 120.74193 * 45.23536 * 9 7 2 11 11 N 1.38439 * 120.98857 * 359.97438 * 10 9 7 12 12 C 1.39158 * 118.01735 * 179.73414 * 10 9 7 13 13 C 1.38044 * 119.34543 * 0.56071 * 12 10 9 14 14 N 1.32256 * 121.47183 * 359.69693 * 13 12 10 15 15 C 1.31580 * 122.20734 * 359.97438 * 14 13 12 16 16 Br 1.89098 * 119.78102 * 179.97438 * 15 14 13 17 17 H 0.97006 * 120.00304 * 0.02562 * 1 2 3 18 18 H 0.96992 * 120.00737 * 359.97438 * 11 10 9 19 19 H 0.97006 * 119.99730 * 180.02562 * 11 10 9 20 20 H 1.07995 * 120.32601 * 180.25793 * 12 10 9 21 21 H 1.08003 * 119.25891 * 179.67304 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3975 2.1001 1.3959 5 1 3.5836 1.4153 -0.6052 6 1 1.4897 2.6241 -0.7908 7 6 2.0085 -1.2118 0.0005 8 1 1.5094 -2.1236 -0.2925 9 6 3.3657 -1.2424 0.3837 10 6 3.8098 -0.5452 1.5378 11 7 2.9251 0.1819 2.3158 12 6 5.1600 -0.6186 1.8667 13 6 6.0133 -1.3480 1.0633 14 7 5.5755 -1.9844 -0.0103 15 6 4.3109 -1.9606 -0.3727 16 35 3.7599 -2.8951 -1.9215 17 1 -0.4851 0.8401 -0.0004 18 1 1.9864 0.2207 2.0751 19 1 3.2443 0.6532 3.1013 20 1 5.5374 -0.1061 2.7392 21 1 7.0619 -1.3996 1.3168 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306382221.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:12 Heat of formation + Delta-G solvation = 12.618448 kcal Electronic energy + Delta-G solvation = -10459.546619 eV Core-core repulsion = 8380.510160 eV Total energy + Delta-G solvation = -2079.036459 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.62099 -36.68111 -35.03445 -32.97705 -31.15020 -30.22173 -27.17950 -23.11375 -23.05535 -19.83543 -18.16376 -17.73609 -17.00652 -15.72642 -15.33133 -15.03558 -14.76440 -14.63413 -13.65874 -13.31603 -13.08801 -12.39261 -11.99832 -11.70930 -11.49770 -10.91010 -10.87213 -10.10008 -9.44453 -8.84514 -8.65146 -6.40073 0.41402 0.89112 1.02474 1.28521 1.38119 1.44481 2.09210 2.62610 3.17701 3.36122 4.16565 4.44320 4.65452 4.73324 5.14758 5.20357 5.46830 5.87432 6.22164 6.41500 6.69776 6.75601 7.11639 7.43510 8.27693 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.027791 B = 0.015880 C = 0.011320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.283969 B = 1762.819724 C = 2472.816472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.052 3.948 3 Si 0.946 3.054 4 H -0.217 1.217 5 H -0.285 1.285 6 H -0.291 1.291 7 C -0.472 4.472 8 H 0.067 0.933 9 C -0.008 4.008 10 C 0.169 3.831 11 N -0.856 5.856 12 C -0.222 4.222 13 C 0.053 3.947 14 N -0.509 5.509 15 C 0.035 3.965 16 Br -0.046 7.046 17 H 0.291 0.709 18 H 0.400 0.600 19 H 0.407 0.593 20 H 0.157 0.843 21 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.038 1.857 2.863 6.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.161 4.161 3 Si 0.770 3.230 4 H -0.140 1.140 5 H -0.211 1.211 6 H -0.218 1.218 7 C -0.504 4.504 8 H 0.085 0.915 9 C -0.018 4.018 10 C 0.055 3.945 11 N -0.402 5.402 12 C -0.249 4.249 13 C -0.109 4.109 14 N -0.221 5.221 15 C -0.179 4.179 16 Br 0.038 6.962 17 H 0.102 0.898 18 H 0.232 0.768 19 H 0.238 0.762 20 H 0.174 0.826 21 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.125 1.098 1.741 6.461 hybrid contribution -0.770 1.136 0.659 1.522 sum 5.355 2.234 2.399 6.279 Atomic orbital electron populations 1.69744 1.08619 1.30971 1.38222 1.26451 0.95109 1.02765 0.91772 0.86010 0.78233 0.77792 0.80968 1.13996 1.21072 1.21848 1.18881 0.92987 0.96047 1.42511 0.91521 1.18177 0.94298 0.96462 0.92817 1.18354 0.91011 0.94884 0.90208 1.42566 1.10288 1.56153 1.31197 1.21590 0.91429 1.07067 1.04830 1.22440 1.00509 0.96575 0.91328 1.66834 1.15516 1.21746 1.18049 1.22793 0.90930 1.07534 0.96643 1.96354 1.90644 1.74921 1.34318 0.89794 0.76766 0.76157 0.82567 0.80731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.42 13.93 21.83 0.30 -43.12 14 2 C 0.05 2.60 4.14 85.24 0.35 2.96 14 3 Si 0.95 40.01 24.25 68.60 1.66 41.67 14 4 H -0.22 -7.69 6.05 99.48 0.60 -7.09 14 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 14 6 H -0.29 -12.17 7.11 99.48 0.71 -11.46 14 7 C -0.47 -24.97 8.28 23.37 0.19 -24.77 14 8 H 0.07 3.90 7.78 -2.91 -0.02 3.88 14 9 C -0.01 -0.38 4.65 -21.05 -0.10 -0.48 14 10 C 0.17 7.06 5.35 39.24 0.21 7.27 14 11 N -0.86 -30.73 6.28 -50.05 -0.31 -31.04 14 12 C -0.22 -7.92 9.97 22.44 0.22 -7.70 14 13 C 0.05 2.00 11.15 84.58 0.94 2.94 14 14 N -0.51 -22.93 10.30 -188.93 -1.95 -24.87 14 15 C 0.04 1.72 7.24 85.35 0.62 2.33 14 16 Br -0.05 -2.05 32.67 -20.37 -0.67 -2.71 14 17 H 0.29 13.48 8.30 -92.70 -0.77 12.71 14 18 H 0.40 15.68 5.16 -92.71 -0.48 15.20 14 19 H 0.41 11.11 8.85 -92.70 -0.82 10.29 14 20 H 0.16 4.14 8.06 -2.91 -0.02 4.11 14 21 H 0.18 5.01 8.06 -2.91 -0.02 4.98 14 Total: -1.00 -58.98 204.67 1.36 -57.61 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -0.12 Total: 19.90 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 2.44 Total: -17.44 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -1.96 Total: -99.03 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.66 Total: 41.67 kcal Atomic # 35 Polarization: -2.05 SS G_CDS: -0.67 Total: -2.71 kcal Total: -58.98 1.36 -57.61 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306382221.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.230 kcal (2) G-P(sol) polarization free energy of solvation -58.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds