Wall clock time and date at job start Mon Mar 30 2020 05:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48503 * 109.46916 * 269.99796 * 3 2 1 5 5 H 1.48491 * 109.47457 * 30.00353 * 3 2 1 6 6 H 1.48503 * 109.46880 * 150.00277 * 3 2 1 7 7 C 1.40036 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00119 * 194.03303 * 7 2 1 9 9 C 1.41488 * 119.99355 * 14.02825 * 7 2 1 10 10 C 1.41208 * 121.00695 * 24.50926 * 9 7 2 11 11 C 1.36499 * 119.16375 * 179.97438 * 10 9 7 12 12 N 1.32134 * 121.29855 * 359.72132 * 11 10 9 13 13 C 1.32476 * 122.23320 * 0.56971 * 12 11 10 14 14 N 1.39119 * 119.66488 * 179.71085 * 13 12 11 15 15 C 1.38890 * 120.66672 * 359.43724 * 13 12 11 16 16 Br 1.89106 * 120.68012 * 180.25249 * 15 13 12 17 17 H 0.97006 * 119.99727 * 359.97438 * 1 2 3 18 18 H 1.08009 * 120.41681 * 359.97438 * 10 9 7 19 19 H 1.07998 * 119.34941 * 180.02562 * 11 10 9 20 20 H 0.97000 * 120.00141 * 179.73110 * 14 13 12 21 21 H 0.97003 * 120.00337 * 359.44977 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4391 2.6526 0.7001 6 1 3.5391 1.4400 0.7000 7 6 2.0076 -1.2128 -0.0005 8 1 3.0634 -1.2268 0.2262 9 6 1.3317 -2.4196 -0.2981 10 6 0.1501 -2.4200 -1.0714 11 6 -0.4711 -3.6062 -1.3363 12 7 0.0146 -4.7505 -0.8883 13 6 1.1155 -4.8116 -0.1540 14 7 1.5762 -6.0452 0.2948 15 6 1.8175 -3.6571 0.1677 16 35 3.3931 -3.7447 1.2099 17 1 -0.4850 0.8401 0.0004 18 1 -0.2569 -1.4933 -1.4485 19 1 -1.3747 -3.6100 -1.9277 20 1 2.3840 -6.0960 0.8295 21 1 1.0875 -6.8542 0.0764 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306412147.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:05 Heat of formation + Delta-G solvation = 20.678544 kcal Electronic energy + Delta-G solvation = -10201.669702 eV Core-core repulsion = 8122.982755 eV Total energy + Delta-G solvation = -2078.686947 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.46336 -34.58907 -33.18246 -31.27510 -29.06027 -27.36765 -25.84432 -21.33688 -21.18349 -17.71696 -16.35010 -15.59549 -14.89176 -14.05296 -13.62708 -13.03166 -12.94764 -12.46050 -11.49943 -11.29191 -11.14932 -10.46572 -10.04726 -9.90955 -9.71407 -9.25783 -9.03284 -8.02873 -7.88232 -6.96369 -6.61586 -4.71530 2.61029 2.88844 3.00165 3.04542 3.21026 3.26553 3.81173 4.59192 4.60843 5.57443 6.04032 6.58815 6.75680 6.91023 7.05723 7.36392 7.68864 7.83657 8.22619 8.31507 8.54411 8.64636 8.68077 9.63174 9.97127 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.029283 B = 0.013354 C = 0.009368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.951305 B = 2096.307132 C = 2988.167275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.078 3.922 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.436 4.436 8 H 0.093 0.907 9 C 0.172 3.828 10 C -0.240 4.240 11 C 0.121 3.879 12 N -0.620 5.620 13 C 0.436 3.564 14 N -0.868 5.868 15 C -0.302 4.302 16 Br -0.103 7.103 17 H 0.285 0.715 18 H 0.131 0.869 19 H 0.124 0.876 20 H 0.398 0.602 21 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 -2.626 1.267 4.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.466 4.466 8 H 0.111 0.889 9 C 0.163 3.837 10 C -0.266 4.266 11 C -0.026 4.026 12 N -0.346 5.346 13 C 0.198 3.802 14 N -0.414 5.414 15 C -0.390 4.390 16 Br -0.021 7.021 17 H 0.096 0.904 18 H 0.149 0.851 19 H 0.142 0.858 20 H 0.229 0.771 21 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 3.903 -3.180 1.414 5.229 hybrid contribution 0.439 1.263 0.131 1.344 sum 4.341 -1.917 1.546 4.991 Atomic orbital electron populations 1.69789 1.07804 1.29806 1.32535 1.26049 0.94811 1.01790 0.91700 0.86179 0.80634 0.79736 0.79585 1.18975 1.20038 1.18150 1.19855 0.97608 0.90078 1.39038 0.88901 1.17431 0.89998 0.90469 0.85833 1.21814 1.00289 0.98429 1.06069 1.21469 0.97207 0.87907 0.96056 1.66975 1.15402 1.30088 1.22096 1.17662 0.88936 0.84470 0.89128 1.42251 1.31704 1.05463 1.61978 1.21738 1.01462 0.96096 1.19709 1.96176 1.36070 1.98400 1.71419 0.90390 0.85114 0.85829 0.77133 0.78280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.04 10.80 55.55 0.60 -18.44 14 2 C 0.08 1.86 5.25 -17.34 -0.09 1.77 14 3 Si 0.92 17.97 29.58 -169.99 -5.03 12.94 14 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 14 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 14 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 14 7 C -0.44 -11.19 8.57 -37.67 -0.32 -11.52 14 8 H 0.09 2.34 6.98 -52.49 -0.37 1.97 14 9 C 0.17 4.54 5.61 -106.53 -0.60 3.94 14 10 C -0.24 -6.13 8.74 -39.08 -0.34 -6.47 14 11 C 0.12 2.89 11.10 -18.05 -0.20 2.69 14 12 N -0.62 -15.00 10.36 -12.79 -0.13 -15.14 14 13 C 0.44 10.26 7.75 -154.93 -1.20 9.06 14 14 N -0.87 -16.39 9.03 31.12 0.28 -16.11 14 15 C -0.30 -7.47 6.33 -38.34 -0.24 -7.71 14 16 Br -0.10 -2.16 30.70 -68.01 -2.09 -4.25 14 17 H 0.28 6.30 8.29 -40.82 -0.34 5.96 14 18 H 0.13 3.35 6.13 -52.48 -0.32 3.03 14 19 H 0.12 2.55 8.06 -52.49 -0.42 2.13 14 20 H 0.40 6.89 7.22 -40.82 -0.29 6.59 14 21 H 0.39 6.47 8.95 -40.82 -0.37 6.10 14 LS Contribution 210.77 15.07 3.18 3.18 Total: -1.00 -27.43 210.77 -7.09 -34.52 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -0.90 Total: 11.54 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -3.00 Total: -8.24 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.75 Total: -49.69 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 35 Polarization: -2.16 SS G_CDS: -2.09 Total: -4.25 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -27.43 -7.09 -34.52 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306412147.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.196 kcal (2) G-P(sol) polarization free energy of solvation -27.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds