Wall clock time and date at job start Mon Mar 30 2020 05:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48503 * 109.46916 * 269.99796 * 3 2 1 5 5 H 1.48491 * 109.47457 * 30.00353 * 3 2 1 6 6 H 1.48503 * 109.46880 * 150.00277 * 3 2 1 7 7 C 1.40036 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00119 * 194.03303 * 7 2 1 9 9 C 1.41488 * 119.99355 * 14.02825 * 7 2 1 10 10 C 1.41208 * 121.00695 * 24.50926 * 9 7 2 11 11 C 1.36499 * 119.16375 * 179.97438 * 10 9 7 12 12 N 1.32134 * 121.29855 * 359.72132 * 11 10 9 13 13 C 1.32476 * 122.23320 * 0.56971 * 12 11 10 14 14 N 1.39119 * 119.66488 * 179.71085 * 13 12 11 15 15 C 1.38890 * 120.66672 * 359.43724 * 13 12 11 16 16 Br 1.89106 * 120.68012 * 180.25249 * 15 13 12 17 17 H 0.97006 * 119.99727 * 359.97438 * 1 2 3 18 18 H 1.08009 * 120.41681 * 359.97438 * 10 9 7 19 19 H 1.07998 * 119.34941 * 180.02562 * 11 10 9 20 20 H 0.97000 * 120.00141 * 179.73110 * 14 13 12 21 21 H 0.97003 * 120.00337 * 359.44977 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4391 2.6526 0.7001 6 1 3.5391 1.4400 0.7000 7 6 2.0076 -1.2128 -0.0005 8 1 3.0634 -1.2268 0.2262 9 6 1.3317 -2.4196 -0.2981 10 6 0.1501 -2.4200 -1.0714 11 6 -0.4711 -3.6062 -1.3363 12 7 0.0146 -4.7505 -0.8883 13 6 1.1155 -4.8116 -0.1540 14 7 1.5762 -6.0452 0.2948 15 6 1.8175 -3.6571 0.1677 16 35 3.3931 -3.7447 1.2099 17 1 -0.4850 0.8401 0.0004 18 1 -0.2569 -1.4933 -1.4485 19 1 -1.3747 -3.6100 -1.9277 20 1 2.3840 -6.0960 0.8295 21 1 1.0875 -6.8542 0.0764 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306412147.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:05 Heat of formation + Delta-G solvation = 3.378143 kcal Electronic energy + Delta-G solvation = -10202.419903 eV Core-core repulsion = 8122.982755 eV Total energy + Delta-G solvation = -2079.437149 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.28557 -36.38946 -34.92656 -33.10593 -30.85200 -29.17572 -27.70659 -23.17941 -23.02069 -19.53785 -18.06959 -17.39167 -16.58201 -15.85482 -15.39970 -14.81958 -14.69651 -14.21877 -13.23064 -13.00597 -12.88231 -12.10150 -11.83604 -11.70140 -11.45312 -10.99901 -10.77726 -9.88583 -9.74344 -8.75762 -8.38040 -6.62427 0.78666 1.11666 1.38912 1.41006 1.53771 1.59692 2.18595 2.77052 2.96726 3.68433 4.29173 4.77623 4.92455 5.13119 5.20604 5.48897 5.83207 5.98505 6.41828 6.55439 6.75785 6.83779 6.94292 7.82149 8.20510 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.029283 B = 0.013354 C = 0.009368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.951305 B = 2096.307132 C = 2988.167275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.041 3.959 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.461 4.461 8 H 0.090 0.910 9 C 0.144 3.856 10 C -0.264 4.264 11 C 0.122 3.878 12 N -0.630 5.630 13 C 0.429 3.571 14 N -0.849 5.849 15 C -0.330 4.330 16 Br -0.075 7.075 17 H 0.295 0.705 18 H 0.122 0.878 19 H 0.152 0.848 20 H 0.407 0.593 21 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.517 -2.400 1.475 5.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.108 0.892 9 C 0.135 3.865 10 C -0.290 4.290 11 C -0.026 4.026 12 N -0.356 5.356 13 C 0.190 3.810 14 N -0.396 5.396 15 C -0.417 4.417 16 Br 0.008 6.992 17 H 0.106 0.894 18 H 0.140 0.860 19 H 0.169 0.831 20 H 0.239 0.761 21 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.403 -3.005 1.637 5.576 hybrid contribution 0.284 1.111 0.098 1.151 sum 4.687 -1.894 1.735 5.345 Atomic orbital electron populations 1.69818 1.09085 1.31304 1.32262 1.26868 0.95546 1.04679 0.90729 0.85147 0.79153 0.75406 0.79842 1.18271 1.18885 1.18136 1.20055 0.97678 0.91036 1.40318 0.89160 1.17825 0.90730 0.91569 0.86402 1.21821 1.01084 0.98736 1.07389 1.21882 0.97742 0.87421 0.95567 1.67082 1.15841 1.30031 1.22614 1.17944 0.88683 0.85673 0.88735 1.42133 1.31813 1.04576 1.61095 1.21987 1.03060 0.96104 1.20591 1.96143 1.34180 1.98339 1.70547 0.89400 0.85992 0.83070 0.76111 0.76711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.25 10.80 21.84 0.24 -39.01 14 2 C 0.04 1.94 5.25 85.29 0.45 2.39 14 3 Si 0.98 36.07 29.58 68.60 2.03 38.10 14 4 H -0.26 -9.14 7.11 99.48 0.71 -8.43 14 5 H -0.26 -9.15 7.11 99.48 0.71 -8.45 14 6 H -0.26 -9.35 7.11 99.48 0.71 -8.65 14 7 C -0.46 -23.76 8.57 23.51 0.20 -23.56 14 8 H 0.09 4.55 6.98 -2.91 -0.02 4.52 14 9 C 0.14 7.65 5.61 -21.10 -0.12 7.53 14 10 C -0.26 -13.61 8.74 22.59 0.20 -13.41 14 11 C 0.12 5.75 11.10 84.24 0.93 6.69 14 12 N -0.63 -29.86 10.36 -194.38 -2.01 -31.87 14 13 C 0.43 19.75 7.75 132.94 1.03 20.78 14 14 N -0.85 -30.56 9.03 -55.47 -0.50 -31.06 14 15 C -0.33 -16.14 6.33 23.07 0.15 -15.99 14 16 Br -0.07 -3.06 30.70 -20.37 -0.63 -3.68 14 17 H 0.29 12.90 8.29 -92.70 -0.77 12.13 14 18 H 0.12 6.36 6.13 -2.91 -0.02 6.35 14 19 H 0.15 6.08 8.06 -2.91 -0.02 6.05 14 20 H 0.41 13.27 7.22 -92.71 -0.67 12.60 14 21 H 0.40 12.51 8.95 -92.71 -0.83 11.68 14 Total: -1.00 -57.06 210.77 1.75 -55.30 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -0.21 Total: 27.81 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 2.84 Total: -15.59 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -2.28 Total: -101.95 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Atomic # 35 Polarization: -3.06 SS G_CDS: -0.63 Total: -3.68 kcal Total: -57.06 1.75 -55.30 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306412147.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.682 kcal (2) G-P(sol) polarization free energy of solvation -57.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds