Wall clock time and date at job start Mon Mar 30 2020 05:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29441 * 1 3 3 Si 1.86803 * 120.00364 * 2 1 4 4 H 1.48505 * 109.46902 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46997 * 120.00300 * 3 2 1 6 6 H 1.48491 * 109.47533 * 240.00336 * 3 2 1 7 7 C 1.46692 * 119.99760 * 180.28163 * 2 1 3 8 8 H 1.07998 * 120.00166 * 195.84394 * 7 2 1 9 9 C 1.39295 * 120.00018 * 15.84443 * 7 2 1 10 10 C 1.46886 * 120.68172 * 44.22703 * 9 7 2 11 11 N 1.37622 * 120.63136 * 359.96137 * 10 9 7 12 12 C 1.39047 * 118.73136 * 179.97438 * 10 9 7 13 13 C 1.37877 * 120.06909 * 0.02835 * 12 10 9 14 14 N 1.48020 * 119.27611 * 179.97438 * 13 12 10 15 15 O 1.31697 * 120.00437 * 359.97438 * 14 13 12 16 16 O 1.31706 * 119.99346 * 180.02562 * 14 13 12 17 17 C 1.39048 * 121.44011 * 359.97438 * 13 12 10 18 18 C 1.36102 * 121.32429 * 359.68211 * 17 13 12 19 19 Cl 1.73596 * 120.10494 * 180.29354 * 18 17 13 20 20 H 0.97007 * 119.99603 * 354.24792 * 1 2 3 21 21 H 0.96997 * 120.00025 * 359.97438 * 11 10 9 22 22 H 0.96999 * 119.99486 * 180.02562 * 11 10 9 23 23 H 1.07998 * 119.96970 * 180.02562 * 12 10 9 24 24 H 1.08005 * 119.33335 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2944 0.0000 0.0000 3 14 2.2285 1.6177 0.0000 4 1 1.2635 2.7465 0.0006 5 1 3.0823 1.6963 1.2125 6 1 3.0822 1.6964 -1.2124 7 6 2.0278 -1.2704 -0.0062 8 1 3.0770 -1.2895 0.2490 9 6 1.3710 -2.4522 -0.3414 10 6 0.4569 -2.5018 -1.4901 11 7 0.2319 -1.3808 -2.2561 12 6 -0.1770 -3.7028 -1.7885 13 6 0.0563 -4.8185 -1.0127 14 7 -0.6283 -6.0879 -1.3459 15 8 -1.4501 -6.1429 -2.3735 16 8 -0.4161 -7.1621 -0.6140 17 6 0.9205 -4.7771 0.0758 18 6 1.5764 -3.6340 0.4155 19 17 2.6541 -3.6201 1.7764 20 1 -0.4850 0.8359 0.0842 21 1 0.6786 -0.5475 -2.0393 22 1 -0.3739 -1.4239 -3.0124 23 1 -0.8528 -3.7620 -2.6289 24 1 1.0780 -5.6714 0.6606 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306473647.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:23 Heat of formation + Delta-G solvation = 21.922355 kcal Electronic energy + Delta-G solvation = -14832.805790 eV Core-core repulsion = 11968.600465 eV Total energy + Delta-G solvation = -2864.205325 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.68940 -37.10196 -35.65223 -34.57517 -33.26788 -32.87901 -30.82678 -28.27335 -26.83153 -23.94180 -21.32691 -20.95081 -18.42321 -17.42716 -16.92013 -16.09571 -15.76129 -14.88129 -14.56408 -14.36386 -13.57173 -13.46558 -12.90857 -12.77082 -11.91625 -11.84939 -11.39252 -11.14489 -10.90904 -10.61548 -10.12781 -10.04022 -9.91627 -9.72103 -9.68085 -9.49041 -8.14450 -7.79953 -6.91890 -5.04865 0.57785 2.20662 2.49883 2.54064 2.58026 2.60858 2.68157 3.21319 3.25180 3.67381 4.59824 4.79762 5.77739 5.87689 5.95682 6.10917 6.33933 6.44575 6.84399 6.95844 7.01879 7.26144 7.50701 7.52820 7.77733 8.28654 8.43623 8.60879 9.04609 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.028318 B = 0.008874 C = 0.007002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.532179 B = 3154.521967 C = 3997.835265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.053 3.947 3 Si 0.925 3.075 4 H -0.268 1.268 5 H -0.251 1.251 6 H -0.251 1.251 7 C -0.382 4.382 8 H 0.113 0.887 9 C 0.105 3.895 10 C 0.184 3.816 11 N -0.848 5.848 12 C -0.164 4.164 13 C -0.068 4.068 14 N 0.038 4.962 15 O -0.291 6.291 16 O -0.295 6.295 17 C -0.029 4.029 18 C -0.118 4.118 19 Cl -0.086 7.086 20 H 0.307 0.693 21 H 0.396 0.604 22 H 0.386 0.614 23 H 0.123 0.877 24 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.203 8.015 0.224 9.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.178 4.178 3 Si 0.746 3.254 4 H -0.192 1.192 5 H -0.175 1.175 6 H -0.174 1.174 7 C -0.408 4.408 8 H 0.131 0.869 9 C 0.098 3.902 10 C 0.075 3.925 11 N -0.388 5.388 12 C -0.192 4.192 13 C -0.167 4.167 14 N 0.471 4.529 15 O -0.454 6.454 16 O -0.457 6.457 17 C -0.051 4.051 18 C -0.148 4.148 19 Cl -0.058 7.058 20 H 0.121 0.879 21 H 0.228 0.772 22 H 0.213 0.787 23 H 0.141 0.859 24 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.211 8.354 0.385 9.363 hybrid contribution -0.096 0.565 -0.065 0.576 sum 4.115 8.919 0.320 9.827 Atomic orbital electron populations 1.69064 1.08822 1.32985 1.21862 1.27797 0.94940 1.02590 0.92474 0.86012 0.80480 0.77284 0.81649 1.19205 1.17501 1.17428 1.21069 0.98068 0.89176 1.32460 0.86911 1.18303 0.90589 0.91977 0.89331 1.18400 0.97077 0.86354 0.90628 1.41679 1.52789 1.10916 1.33390 1.19472 1.05525 0.90765 1.03413 1.18868 1.09578 0.82634 1.05654 1.50043 0.99368 1.03524 0.99928 1.96107 1.35711 1.94087 1.19527 1.96117 1.74065 1.24573 1.50958 1.19775 0.93517 0.97478 0.94375 1.19833 1.04618 0.95496 0.94866 1.98253 1.64296 1.98779 1.44431 0.87943 0.77225 0.78716 0.85904 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -13.13 11.32 55.99 0.63 -12.49 14 2 C 0.05 0.94 3.76 -15.15 -0.06 0.88 14 3 Si 0.93 13.02 29.68 -169.99 -5.04 7.98 14 4 H -0.27 -3.68 7.11 56.52 0.40 -3.28 14 5 H -0.25 -3.65 7.11 56.52 0.40 -3.25 14 6 H -0.25 -3.49 7.11 56.52 0.40 -3.09 14 7 C -0.38 -7.50 8.16 -35.78 -0.29 -7.79 14 8 H 0.11 2.12 7.80 -52.49 -0.41 1.71 14 9 C 0.10 2.24 5.47 -104.63 -0.57 1.67 14 10 C 0.18 3.84 6.47 -81.47 -0.53 3.31 14 11 N -0.85 -14.87 8.03 33.72 0.27 -14.59 14 12 C -0.16 -3.65 9.40 -39.41 -0.37 -4.02 14 13 C -0.07 -1.63 6.88 -79.78 -0.55 -2.18 14 14 N 0.04 0.99 4.98 34.05 0.17 1.16 14 15 O -0.29 -7.72 19.07 -31.57 -0.60 -8.32 14 16 O -0.30 -7.82 19.07 -31.57 -0.60 -8.42 14 17 C -0.03 -0.66 9.21 -40.05 -0.37 -1.03 14 18 C -0.12 -2.52 6.35 -38.97 -0.25 -2.77 14 19 Cl -0.09 -1.63 27.98 -51.86 -1.45 -3.08 14 20 H 0.31 5.02 8.28 -40.82 -0.34 4.68 14 21 H 0.40 6.70 5.63 -40.82 -0.23 6.47 14 22 H 0.39 5.84 8.83 -40.82 -0.36 5.47 14 23 H 0.12 2.64 7.51 -52.49 -0.39 2.25 14 24 H 0.13 2.79 7.49 -52.48 -0.39 2.39 14 LS Contribution 242.68 15.07 3.66 3.66 Total: -1.00 -25.82 242.68 -6.87 -32.70 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -0.92 Total: 13.36 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -2.98 Total: -11.94 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 1.07 Total: -25.93 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -1.20 Total: -16.74 kcal Atomic # 14 Polarization: 13.02 SS G_CDS: -5.04 Total: 7.98 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -1.45 Total: -3.08 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -25.82 -6.87 -32.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306473647.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.619 kcal (2) G-P(sol) polarization free energy of solvation -25.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds