Wall clock time and date at job start Mon Mar 30 2020 05:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29441 * 1 3 3 Si 1.86803 * 120.00364 * 2 1 4 4 H 1.48505 * 109.46902 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46997 * 120.00300 * 3 2 1 6 6 H 1.48491 * 109.47533 * 240.00336 * 3 2 1 7 7 C 1.46692 * 119.99760 * 180.28163 * 2 1 3 8 8 H 1.07998 * 120.00166 * 195.84394 * 7 2 1 9 9 C 1.39295 * 120.00018 * 15.84443 * 7 2 1 10 10 C 1.46886 * 120.68172 * 44.22703 * 9 7 2 11 11 N 1.37622 * 120.63136 * 359.96137 * 10 9 7 12 12 C 1.39047 * 118.73136 * 179.97438 * 10 9 7 13 13 C 1.37877 * 120.06909 * 0.02835 * 12 10 9 14 14 N 1.48020 * 119.27611 * 179.97438 * 13 12 10 15 15 O 1.31697 * 120.00437 * 359.97438 * 14 13 12 16 16 O 1.31706 * 119.99346 * 180.02562 * 14 13 12 17 17 C 1.39048 * 121.44011 * 359.97438 * 13 12 10 18 18 C 1.36102 * 121.32429 * 359.68211 * 17 13 12 19 19 Cl 1.73596 * 120.10494 * 180.29354 * 18 17 13 20 20 H 0.97007 * 119.99603 * 354.24792 * 1 2 3 21 21 H 0.96997 * 120.00025 * 359.97438 * 11 10 9 22 22 H 0.96999 * 119.99486 * 180.02562 * 11 10 9 23 23 H 1.07998 * 119.96970 * 180.02562 * 12 10 9 24 24 H 1.08005 * 119.33335 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2944 0.0000 0.0000 3 14 2.2285 1.6177 0.0000 4 1 1.2635 2.7465 0.0006 5 1 3.0823 1.6963 1.2125 6 1 3.0822 1.6964 -1.2124 7 6 2.0278 -1.2704 -0.0062 8 1 3.0770 -1.2895 0.2490 9 6 1.3710 -2.4522 -0.3414 10 6 0.4569 -2.5018 -1.4901 11 7 0.2319 -1.3808 -2.2561 12 6 -0.1770 -3.7028 -1.7885 13 6 0.0563 -4.8185 -1.0127 14 7 -0.6283 -6.0879 -1.3459 15 8 -1.4501 -6.1429 -2.3735 16 8 -0.4161 -7.1621 -0.6140 17 6 0.9205 -4.7771 0.0758 18 6 1.5764 -3.6340 0.4155 19 17 2.6541 -3.6201 1.7764 20 1 -0.4850 0.8359 0.0842 21 1 0.6786 -0.5475 -2.0393 22 1 -0.3739 -1.4239 -3.0124 23 1 -0.8528 -3.7620 -2.6289 24 1 1.0780 -5.6714 0.6606 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306473647.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:22 Heat of formation + Delta-G solvation = 6.080670 kcal Electronic energy + Delta-G solvation = -14833.492737 eV Core-core repulsion = 11968.600465 eV Total energy + Delta-G solvation = -2864.892272 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.36173 -38.68075 -37.33837 -36.27274 -34.91648 -34.46872 -32.57563 -29.97085 -28.53009 -25.65725 -23.01816 -22.62510 -20.12932 -19.06379 -18.53858 -17.66751 -17.35141 -16.51358 -16.18821 -15.92076 -15.20856 -15.06670 -14.53697 -14.25579 -13.54804 -13.29877 -12.85547 -12.73692 -12.37756 -12.06865 -11.74320 -11.59310 -11.47418 -11.37858 -11.31734 -11.29535 -9.88888 -9.42294 -8.61966 -6.75551 -1.30287 0.57364 0.85955 1.03619 1.32083 1.44778 1.54793 1.57591 2.03681 2.16292 2.84980 3.21353 4.09032 4.11574 4.28560 4.42582 4.70388 4.73680 5.08972 5.30542 5.41911 5.51273 5.69358 5.79843 6.02747 6.67846 6.80389 7.15213 7.43784 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.028318 B = 0.008874 C = 0.007002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.532179 B = 3154.521967 C = 3997.835265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.014 3.986 3 Si 1.001 2.999 4 H -0.256 1.256 5 H -0.249 1.249 6 H -0.239 1.239 7 C -0.283 4.283 8 H 0.143 0.857 9 C 0.048 3.952 10 C 0.214 3.786 11 N -0.830 5.830 12 C -0.212 4.212 13 C -0.061 4.061 14 N 0.040 4.960 15 O -0.407 6.407 16 O -0.411 6.411 17 C -0.037 4.037 18 C -0.101 4.101 19 Cl -0.057 7.057 20 H 0.332 0.668 21 H 0.402 0.598 22 H 0.401 0.599 23 H 0.115 0.885 24 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.653 15.913 2.004 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.219 4.219 3 Si 0.817 3.183 4 H -0.179 1.179 5 H -0.172 1.172 6 H -0.162 1.162 7 C -0.307 4.307 8 H 0.160 0.840 9 C 0.041 3.959 10 C 0.102 3.898 11 N -0.372 5.372 12 C -0.241 4.241 13 C -0.172 4.172 14 N 0.426 4.574 15 O -0.537 6.537 16 O -0.540 6.540 17 C -0.059 4.059 18 C -0.132 4.132 19 Cl -0.029 7.029 20 H 0.147 0.853 21 H 0.235 0.765 22 H 0.230 0.770 23 H 0.133 0.867 24 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.445 15.872 2.066 17.653 hybrid contribution -0.509 -0.302 -0.144 0.609 sum 6.936 15.570 1.922 17.153 Atomic orbital electron populations 1.69034 1.10365 1.36147 1.15700 1.28856 0.95719 1.05045 0.92281 0.84871 0.79193 0.72194 0.82061 1.17931 1.17224 1.16241 1.22292 0.98676 0.89518 1.20185 0.83959 1.18631 0.92968 0.92840 0.91486 1.18371 0.94675 0.86516 0.90215 1.41683 1.52406 1.09891 1.33184 1.19311 1.08468 0.91383 1.04962 1.19238 1.09302 0.82639 1.06013 1.49845 1.02389 1.03803 1.01337 1.95984 1.40382 1.94692 1.22649 1.95993 1.78147 1.26322 1.53577 1.19883 0.93860 0.97870 0.94247 1.19991 1.03472 0.94616 0.95167 1.98267 1.63056 1.98725 1.42831 0.85264 0.76483 0.76969 0.86699 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -20.37 11.32 23.24 0.26 -20.11 14 2 C 0.01 0.37 3.76 87.25 0.33 0.70 14 3 Si 1.00 18.21 29.68 68.60 2.04 20.25 14 4 H -0.26 -4.44 7.11 99.48 0.71 -3.73 14 5 H -0.25 -4.70 7.11 99.48 0.71 -3.99 14 6 H -0.24 -4.18 7.11 99.48 0.71 -3.47 14 7 C -0.28 -8.84 8.16 24.73 0.20 -8.64 14 8 H 0.14 3.92 7.80 -2.91 -0.02 3.90 14 9 C 0.05 1.82 5.47 -19.87 -0.11 1.72 14 10 C 0.21 8.41 6.47 40.69 0.26 8.67 14 11 N -0.83 -25.43 8.03 -47.24 -0.38 -25.81 14 12 C -0.21 -9.88 9.40 22.38 0.21 -9.67 14 13 C -0.06 -3.17 6.88 36.48 0.25 -2.92 14 14 N 0.04 2.42 4.98 -46.20 -0.23 2.19 14 15 O -0.41 -25.58 19.07 3.52 0.07 -25.51 14 16 O -0.41 -25.75 19.07 3.50 0.07 -25.68 14 17 C -0.04 -1.72 9.21 21.97 0.20 -1.52 14 18 C -0.10 -4.09 6.35 22.66 0.14 -3.94 14 19 Cl -0.06 -1.95 27.98 -2.72 -0.08 -2.02 14 20 H 0.33 8.08 8.28 -92.70 -0.77 7.31 14 21 H 0.40 10.88 5.63 -92.71 -0.52 10.36 14 22 H 0.40 10.76 8.83 -92.71 -0.82 9.94 14 23 H 0.12 5.41 7.51 -2.91 -0.02 5.39 14 24 H 0.12 5.81 7.49 -2.91 -0.02 5.79 14 Total: -1.00 -63.98 242.68 3.19 -60.80 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: -0.05 Total: 31.49 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 1.49 Total: -15.59 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.35 Total: -43.73 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: 0.13 Total: -51.19 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: 2.04 Total: 20.25 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.08 Total: -2.02 kcal Total: -63.98 3.19 -60.80 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306473647.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.878 kcal (2) G-P(sol) polarization free energy of solvation -63.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds