Wall clock time and date at job start Mon Mar 30 2020 05:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29304 * 1 3 3 Si 1.86801 * 120.00230 * 2 1 4 4 H 1.48505 * 109.46904 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46854 * 299.99001 * 3 2 1 6 6 H 1.48493 * 109.47358 * 59.99472 * 3 2 1 7 7 C 1.46801 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.33224 * 119.99675 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99762 * 179.97438 * 9 7 2 11 11 O 1.21652 * 119.99699 * 0.02562 * 10 9 7 12 12 C 1.46316 * 120.00356 * 179.97438 * 10 9 7 13 13 C 1.36894 * 125.47247 * 180.02562 * 12 10 9 14 14 C 1.37327 * 113.27895 * 180.02562 * 13 12 10 15 15 N 1.48016 * 122.44164 * 179.97438 * 14 13 12 16 16 O 1.31705 * 119.99987 * 0.02562 * 15 14 13 17 17 O 1.31706 * 120.00293 * 179.72399 * 15 14 13 18 18 C 1.33946 * 115.12127 * 0.25113 * 14 13 12 19 19 S 1.70621 * 110.96588 * 359.61704 * 18 14 13 20 20 H 0.97003 * 120.00096 * 0.02562 * 1 2 3 21 21 H 0.97001 * 120.00213 * 0.02562 * 9 7 2 22 22 H 1.08001 * 123.35650 * 0.04278 * 13 12 10 23 23 H 1.07993 * 124.51984 * 179.72000 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2930 0.0000 0.0000 3 14 2.2271 1.6177 0.0000 4 1 3.6871 1.3462 0.0006 5 1 1.8685 2.3963 -1.2127 6 1 1.8684 2.3965 1.2124 7 6 2.0270 -1.2713 0.0006 8 1 3.1071 -1.2714 0.0010 9 7 1.3608 -2.4251 0.0006 10 6 2.0347 -3.5923 0.0006 11 8 3.2512 -3.5923 0.0010 12 6 1.3031 -4.8595 0.0011 13 6 1.8714 -6.1049 0.0017 14 6 0.9491 -7.1223 0.0016 15 7 1.3414 -8.5496 0.0016 16 8 2.6157 -8.8823 0.0022 17 8 0.4161 -9.4868 0.0069 18 6 -0.3313 -6.7291 -0.0044 19 16 -0.4472 -5.0269 0.0004 20 1 -0.4850 0.8401 -0.0004 21 1 0.3908 -2.4250 -0.0002 22 1 2.9387 -6.2706 0.0024 23 1 -1.1775 -7.4001 -0.0096 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306949361.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:13 Heat of formation + Delta-G solvation = 22.475861 kcal Electronic energy + Delta-G solvation = -14209.108103 eV Core-core repulsion = 11346.970485 eV Total energy + Delta-G solvation = -2862.137617 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.019 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.53800 -38.52169 -36.77890 -34.47129 -34.18148 -32.24295 -30.17515 -27.20140 -25.91488 -23.53906 -20.90713 -19.39804 -18.66870 -18.40608 -17.84756 -16.78675 -15.84453 -15.48371 -15.12466 -14.49350 -14.09743 -13.51892 -13.07282 -12.76296 -12.74594 -12.28194 -11.52700 -11.37789 -11.16193 -10.87522 -10.77245 -10.61875 -10.50165 -10.10943 -8.99977 -8.89188 -8.81707 -8.81425 -7.26244 -4.05412 -0.44658 0.60042 0.88370 1.48288 2.04008 2.25852 2.82585 2.92587 2.98677 3.67338 3.80049 4.38173 4.73468 4.79425 4.89124 5.38533 5.61908 5.82892 6.08975 6.24168 6.61626 6.99430 7.43367 7.90637 8.58959 8.88603 9.63652 9.86664 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.055232 B = 0.005504 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.830784 B = 5085.776505 C = 5582.762753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.944 3.056 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.301 4.301 8 H 0.126 0.874 9 N -0.499 5.499 10 C 0.444 3.556 11 O -0.591 6.591 12 C -0.184 4.184 13 C -0.099 4.099 14 C 0.006 3.994 15 N 0.004 4.996 16 O -0.172 6.172 17 O -0.190 6.190 18 C -0.231 4.231 19 S 0.293 5.707 20 H 0.293 0.707 21 H 0.388 0.612 22 H 0.172 0.828 23 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 -2.703 -0.012 6.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.182 4.182 3 Si 0.768 3.232 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.435 4.435 8 H 0.143 0.857 9 N -0.127 5.127 10 C 0.236 3.764 11 O -0.480 6.480 12 C -0.307 4.307 13 C -0.128 4.128 14 C -0.096 4.096 15 N 0.480 4.520 16 O -0.367 6.367 17 O -0.380 6.380 18 C -0.373 4.373 19 S 0.557 5.443 20 H 0.106 0.894 21 H 0.222 0.778 22 H 0.189 0.811 23 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.346 -0.930 -0.014 6.414 hybrid contribution 0.834 -0.885 -0.002 1.216 sum -5.513 -1.815 -0.016 5.804 Atomic orbital electron populations 1.68626 1.08156 1.31268 1.37711 1.27178 0.95193 1.01049 0.94752 0.85544 0.80616 0.78474 0.78575 1.17887 1.19742 1.19747 1.21133 0.94409 0.81460 1.46516 0.85666 1.41011 1.09270 1.05452 1.56960 1.15990 0.87258 0.81110 0.92080 1.90674 1.11916 1.85134 1.60300 1.25078 0.95886 0.98836 1.10899 1.19963 1.01874 0.88109 1.02815 1.19037 0.93966 0.78891 1.17689 1.50122 1.02633 1.03907 0.95361 1.96275 0.95230 1.89741 1.55487 1.96229 1.42680 1.42681 1.56458 1.25180 0.99966 1.03888 1.08279 1.83382 1.03513 0.93897 1.63463 0.89445 0.77797 0.81087 0.79404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -18.25 13.09 56.00 0.73 -17.51 14 2 C 0.03 0.76 5.69 -15.16 -0.09 0.67 14 3 Si 0.94 17.24 29.65 -169.99 -5.04 12.20 14 4 H -0.26 -4.76 7.11 56.52 0.40 -4.36 14 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 14 6 H -0.27 -4.87 7.11 56.52 0.40 -4.47 14 7 C -0.30 -7.30 9.92 -13.49 -0.13 -7.44 14 8 H 0.13 3.22 7.19 -52.48 -0.38 2.84 14 9 N -0.50 -11.42 5.16 -11.01 -0.06 -11.47 14 10 C 0.44 10.28 7.70 -13.01 -0.10 10.18 14 11 O -0.59 -15.90 16.36 5.23 0.09 -15.81 14 12 C -0.18 -3.47 6.45 -36.82 -0.24 -3.71 14 13 C -0.10 -1.84 9.55 -40.40 -0.39 -2.22 14 14 C 0.01 0.09 6.81 -81.79 -0.56 -0.46 14 15 N 0.00 0.07 4.98 33.06 0.16 0.23 14 16 O -0.17 -3.35 19.50 -31.57 -0.62 -3.96 14 17 O -0.19 -3.42 19.49 -31.57 -0.62 -4.04 14 18 C -0.23 -3.22 10.43 29.22 0.30 -2.91 14 19 S 0.29 4.07 22.15 -107.50 -2.38 1.69 14 20 H 0.29 5.88 8.26 -40.82 -0.34 5.54 14 21 H 0.39 8.15 7.08 -40.82 -0.29 7.86 14 22 H 0.17 3.30 7.94 -52.49 -0.42 2.88 14 23 H 0.19 2.11 7.94 -52.49 -0.42 1.69 14 LS Contribution 246.66 15.07 3.72 3.72 Total: -1.00 -27.51 246.66 -5.84 -33.34 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -0.63 Total: 7.52 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -1.20 Total: -5.89 kcal Atomic # 7 Polarization: -29.60 SS G_CDS: 0.84 Total: -28.76 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -1.15 Total: -23.81 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.04 Total: 12.20 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -2.38 Total: 1.69 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.51 -5.84 -33.34 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306949361.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.818 kcal (2) G-P(sol) polarization free energy of solvation -27.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds