Wall clock time and date at job start Mon Mar 30 2020 05:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86793 * 120.00061 * 2 1 4 4 H 1.48503 * 109.47516 * 270.00087 * 3 2 1 5 5 H 1.48498 * 109.47060 * 30.00230 * 3 2 1 6 6 H 1.48500 * 109.46949 * 150.00011 * 3 2 1 7 7 C 1.40021 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00257 * 197.01040 * 7 2 1 9 9 C 1.41562 * 120.00030 * 17.01172 * 7 2 1 10 10 C 1.40812 * 120.98864 * 23.55525 * 9 7 2 11 11 C 1.38645 * 118.81808 * 180.29609 * 10 9 7 12 12 N 1.39086 * 119.57917 * 179.67756 * 11 10 9 13 13 N 1.32548 * 120.83490 * 359.69798 * 11 10 9 14 14 C 1.32139 * 122.20518 * 0.02562 * 13 11 10 15 15 Br 1.89106 * 119.45163 * 179.97438 * 14 13 11 16 16 C 1.37725 * 121.09721 * 0.02562 * 14 13 11 17 17 H 0.97002 * 120.00226 * 359.97438 * 1 2 3 18 18 H 1.08008 * 120.58847 * 359.97438 * 10 9 7 19 19 H 0.97006 * 119.99562 * 180.02562 * 12 11 10 20 20 H 0.97001 * 120.00427 * 0.02562 * 12 11 10 21 21 H 1.07992 * 120.49643 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6526 0.7001 6 1 3.5389 1.4400 0.7000 7 6 2.0075 -1.2126 -0.0005 8 1 3.0521 -1.2333 0.2731 9 6 1.3461 -2.4116 -0.3598 10 6 0.1923 -2.3894 -1.1666 11 6 -0.4231 -3.5901 -1.4859 12 7 -1.5675 -3.5861 -2.2763 13 7 0.0652 -4.7416 -1.0472 14 6 1.1483 -4.8055 -0.2929 15 35 1.7768 -6.4909 0.2906 16 6 1.8263 -3.6650 0.0763 17 1 -0.4850 0.8400 0.0004 18 1 -0.2091 -1.4533 -1.5260 19 1 -2.0032 -4.4226 -2.5031 20 1 -1.9301 -2.7469 -2.6007 21 1 2.7103 -3.7286 0.6935 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307030629.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:07 Heat of formation + Delta-G solvation = 19.091853 kcal Electronic energy + Delta-G solvation = -10068.193684 eV Core-core repulsion = 7989.437933 eV Total energy + Delta-G solvation = -2078.755751 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.48855 -34.39272 -33.47978 -30.87164 -29.92393 -27.18258 -26.04520 -21.59504 -21.03256 -17.62481 -16.19355 -15.46505 -15.02472 -14.30449 -13.71605 -13.09953 -12.81632 -12.65522 -11.53401 -11.29425 -10.97072 -10.54237 -10.36114 -10.12112 -9.65789 -9.47241 -8.99420 -8.22321 -8.06428 -6.95800 -6.62537 -4.68855 2.46485 2.60143 2.75623 2.99639 3.03246 3.20635 3.81251 4.54033 4.69023 5.54367 6.34641 6.63937 6.77714 6.97000 7.03663 7.18229 7.59677 7.84710 8.16358 8.35468 8.57395 8.65909 8.70555 9.46874 10.00270 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.038773 B = 0.008294 C = 0.006958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.970153 B = 3375.035410 C = 4022.979684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.078 3.922 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.449 4.449 8 H 0.085 0.915 9 C 0.154 3.846 10 C -0.271 4.271 11 C 0.397 3.603 12 N -0.870 5.870 13 N -0.605 5.605 14 C 0.176 3.824 15 Br -0.077 7.077 16 C -0.260 4.260 17 H 0.283 0.717 18 H 0.130 0.870 19 H 0.387 0.613 20 H 0.398 0.602 21 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.853 -3.830 -0.945 4.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.479 4.479 8 H 0.103 0.897 9 C 0.145 3.855 10 C -0.298 4.298 11 C 0.166 3.834 12 N -0.415 5.415 13 N -0.330 5.330 14 C -0.036 4.036 15 Br 0.006 6.994 16 C -0.289 4.289 17 H 0.094 0.906 18 H 0.147 0.853 19 H 0.214 0.786 20 H 0.227 0.773 21 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.500 -5.074 -0.902 5.178 hybrid contribution 0.172 1.852 -0.078 1.862 sum 0.672 -3.222 -0.980 3.434 Atomic orbital electron populations 1.69793 1.07763 1.29574 1.33299 1.25985 0.94787 1.01614 0.91857 0.86214 0.80533 0.79996 0.79487 1.19095 1.20155 1.18349 1.19607 0.98037 0.90544 1.39750 0.89698 1.17509 0.89963 0.91426 0.86590 1.21481 1.03344 0.96013 1.08992 1.17961 0.86965 0.89027 0.89472 1.41978 1.29827 1.10172 1.59504 1.66238 1.16728 1.28266 1.21756 1.21429 0.94807 0.88579 0.98746 1.96466 1.86691 1.27687 1.88521 1.21582 1.05250 0.91691 1.10369 0.90580 0.85265 0.78555 0.77318 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.07 10.91 55.55 0.61 -18.47 14 2 C 0.08 1.85 5.20 -17.35 -0.09 1.76 14 3 Si 0.91 17.67 29.59 -169.99 -5.03 12.64 14 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 14 5 H -0.28 -5.23 7.11 56.52 0.40 -4.83 14 6 H -0.26 -4.98 7.11 56.52 0.40 -4.57 14 7 C -0.45 -11.40 9.12 -37.65 -0.34 -11.75 14 8 H 0.08 2.06 7.90 -52.49 -0.41 1.64 14 9 C 0.15 4.04 5.61 -106.56 -0.60 3.44 14 10 C -0.27 -6.89 8.62 -38.46 -0.33 -7.22 14 11 C 0.40 9.44 7.74 -155.00 -1.20 8.24 14 12 N -0.87 -16.34 9.08 31.07 0.28 -16.06 14 13 N -0.61 -14.82 10.32 -10.98 -0.11 -14.93 14 14 C 0.18 4.22 7.15 -17.61 -0.13 4.10 14 15 Br -0.08 -1.51 33.85 -68.01 -2.30 -3.81 14 16 C -0.26 -6.44 9.60 -38.67 -0.37 -6.81 14 17 H 0.28 6.25 8.29 -40.82 -0.34 5.91 14 18 H 0.13 3.29 6.18 -52.48 -0.32 2.97 14 19 H 0.39 6.51 8.95 -40.82 -0.37 6.15 14 20 H 0.40 6.55 8.82 -40.82 -0.36 6.19 14 21 H 0.11 2.56 8.06 -52.49 -0.42 2.14 14 LS Contribution 216.32 15.07 3.26 3.26 Total: -1.00 -27.31 216.32 -7.38 -34.69 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -1.02 Total: 10.91 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -3.06 Total: -8.23 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.77 Total: -49.46 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 35 Polarization: -1.51 SS G_CDS: -2.30 Total: -3.81 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -27.31 -7.38 -34.69 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307030629.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.782 kcal (2) G-P(sol) polarization free energy of solvation -27.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds