Wall clock time and date at job start Mon Mar 30 2020 05:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48494 * 109.47004 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.46931 * 119.99236 * 3 2 1 6 6 H 1.48494 * 109.47073 * 239.99516 * 3 2 1 7 7 C 1.39989 * 120.00070 * 179.71564 * 2 1 3 8 8 H 1.07995 * 119.99870 * 355.78724 * 7 2 1 9 9 C 1.41015 * 119.99841 * 175.77837 * 7 2 1 10 10 N 1.33754 * 119.73432 * 6.49561 * 9 7 2 11 11 C 1.31265 * 121.46227 * 179.74560 * 10 9 7 12 12 C 1.39836 * 120.75211 * 0.52719 * 11 10 9 13 13 N 1.38871 * 120.29902 * 179.76296 * 12 11 10 14 14 C 1.39752 * 119.40540 * 359.73961 * 12 11 10 15 15 C 1.36898 * 118.63917 * 359.97438 * 14 12 11 16 16 Br 1.89099 * 120.39891 * 180.02562 * 15 14 12 17 17 H 0.97004 * 119.99839 * 174.84729 * 1 2 3 18 18 H 1.07996 * 119.61996 * 180.26261 * 11 10 9 19 19 H 0.96999 * 119.99763 * 179.97438 * 13 12 11 20 20 H 0.96994 * 119.99482 * 359.97188 * 13 12 11 21 21 H 1.07993 * 120.68398 * 180.02562 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 1.2771 2.7464 -0.0006 5 1 3.0957 1.6964 1.2126 6 1 3.0959 1.6963 -1.2124 7 6 2.0080 -1.2123 0.0060 8 1 1.4702 -2.1460 0.0794 9 6 3.4153 -1.2144 -0.0839 10 7 4.0843 -0.0569 -0.0434 11 6 5.3942 -0.0196 -0.1192 12 6 6.1362 -1.1969 -0.2567 13 7 7.5214 -1.1462 -0.3411 14 6 5.4713 -2.4250 -0.3081 15 6 4.1051 -2.4356 -0.2209 16 35 3.1549 -4.0693 -0.2842 17 1 -0.4850 -0.8367 -0.0754 18 1 5.9044 0.9314 -0.0792 19 1 8.0318 -1.9656 -0.4360 20 1 7.9785 -0.2914 -0.3050 21 1 6.0238 -3.3469 -0.4135 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307138709.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:36 Heat of formation + Delta-G solvation = 15.679126 kcal Electronic energy + Delta-G solvation = -10225.660270 eV Core-core repulsion = 8146.756532 eV Total energy + Delta-G solvation = -2078.903738 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.89901 -34.72873 -33.12904 -31.91135 -29.17738 -28.60239 -24.59220 -22.44686 -20.87194 -18.46645 -16.52196 -16.04416 -15.09013 -14.26226 -13.72012 -13.25132 -12.79133 -12.20965 -12.02754 -11.44093 -11.09543 -10.50568 -10.14835 -9.91942 -9.84566 -9.20099 -8.89662 -8.16943 -7.85600 -7.30234 -7.08093 -4.58642 2.21166 2.59081 2.83754 3.62196 3.68457 4.03124 4.41831 4.57304 4.71728 5.41554 5.60691 5.77746 6.19890 6.37037 6.78756 6.89446 7.27890 7.51276 8.03821 8.09501 8.32928 8.43741 8.63046 9.30036 10.02209 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.016111 C = 0.009473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.714780 B = 1737.554123 C = 2955.002683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.043 3.957 3 Si 1.155 2.845 4 H -0.333 1.333 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.467 4.467 8 H 0.097 0.903 9 C 0.239 3.761 10 N -0.536 5.536 11 C 0.105 3.895 12 C 0.019 3.981 13 N -0.889 5.889 14 C -0.071 4.071 15 C -0.197 4.197 16 Br -0.086 7.086 17 H 0.284 0.716 18 H 0.132 0.868 19 H 0.385 0.615 20 H 0.387 0.613 21 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.527 -4.433 -0.712 9.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.179 4.179 3 Si 0.991 3.009 4 H -0.266 1.266 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.499 4.499 8 H 0.115 0.885 9 C 0.114 3.886 10 N -0.254 5.254 11 C -0.060 4.060 12 C -0.084 4.084 13 N -0.434 5.434 14 C -0.102 4.102 15 C -0.281 4.281 16 Br -0.002 7.002 17 H 0.095 0.905 18 H 0.149 0.851 19 H 0.211 0.789 20 H 0.213 0.787 21 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.223 -2.768 -0.572 7.756 hybrid contribution 1.273 -2.346 -0.155 2.674 sum 8.496 -5.114 -0.727 9.943 Atomic orbital electron populations 1.70659 1.08161 1.32849 1.30609 1.27798 0.95341 1.06081 0.88660 0.81787 0.70482 0.69534 0.79084 1.26624 1.21663 1.21715 1.20915 0.90255 0.97212 1.41540 0.88512 1.18309 0.94112 0.85221 0.90970 1.66457 1.08030 1.26888 1.24023 1.21929 0.89928 0.95523 0.98646 1.17987 0.84704 0.93714 1.11979 1.41536 1.03058 1.09424 1.89389 1.20161 0.92551 0.95823 1.01631 1.21668 0.93438 0.90857 1.22147 1.96320 1.77636 1.28163 1.98101 0.90467 0.85059 0.78890 0.78663 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.92 13.65 55.55 0.76 -21.16 14 2 C 0.04 1.17 5.52 -17.33 -0.10 1.07 14 3 Si 1.16 28.39 25.45 -169.99 -4.33 24.06 14 4 H -0.33 -8.10 7.11 56.52 0.40 -7.70 14 5 H -0.29 -7.05 6.98 56.52 0.39 -6.65 14 6 H -0.29 -7.06 6.89 56.52 0.39 -6.67 14 7 C -0.47 -12.71 9.19 -37.87 -0.35 -13.06 14 8 H 0.10 2.64 6.59 -52.49 -0.35 2.29 14 9 C 0.24 6.19 6.42 -84.96 -0.55 5.64 14 10 N -0.54 -13.37 4.50 -10.88 -0.05 -13.42 14 11 C 0.11 2.24 11.07 -17.20 -0.19 2.05 14 12 C 0.02 0.37 6.80 -83.51 -0.57 -0.19 14 13 N -0.89 -12.78 9.05 32.60 0.30 -12.49 14 14 C -0.07 -1.45 9.71 -39.50 -0.38 -1.83 14 15 C -0.20 -4.58 6.26 -39.05 -0.24 -4.82 14 16 Br -0.09 -1.77 31.89 -68.01 -2.17 -3.94 14 17 H 0.28 7.48 8.73 -40.82 -0.36 7.12 14 18 H 0.13 2.35 8.06 -52.49 -0.42 1.93 14 19 H 0.38 4.75 8.84 -40.82 -0.36 4.38 14 20 H 0.39 4.67 8.84 -40.82 -0.36 4.31 14 21 H 0.11 1.99 8.06 -52.49 -0.42 1.57 14 LS Contribution 209.62 15.07 3.16 3.16 Total: -1.00 -28.56 209.62 -5.79 -34.36 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -1.08 Total: 0.58 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -2.38 Total: -11.15 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 1.00 Total: -47.07 kcal Atomic # 14 Polarization: 28.39 SS G_CDS: -4.33 Total: 24.06 kcal Atomic # 35 Polarization: -1.77 SS G_CDS: -2.17 Total: -3.94 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -28.56 -5.79 -34.36 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307138709.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.035 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds