Wall clock time and date at job start Mon Mar 30 2020 05:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48494 * 109.47004 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.46931 * 119.99236 * 3 2 1 6 6 H 1.48494 * 109.47073 * 239.99516 * 3 2 1 7 7 C 1.39989 * 120.00070 * 179.71564 * 2 1 3 8 8 H 1.07995 * 119.99870 * 355.78724 * 7 2 1 9 9 C 1.41015 * 119.99841 * 175.77837 * 7 2 1 10 10 N 1.33754 * 119.73432 * 6.49561 * 9 7 2 11 11 C 1.31265 * 121.46227 * 179.74560 * 10 9 7 12 12 C 1.39836 * 120.75211 * 0.52719 * 11 10 9 13 13 N 1.38871 * 120.29902 * 179.76296 * 12 11 10 14 14 C 1.39752 * 119.40540 * 359.73961 * 12 11 10 15 15 C 1.36898 * 118.63917 * 359.97438 * 14 12 11 16 16 Br 1.89099 * 120.39891 * 180.02562 * 15 14 12 17 17 H 0.97004 * 119.99839 * 174.84729 * 1 2 3 18 18 H 1.07996 * 119.61996 * 180.26261 * 11 10 9 19 19 H 0.96999 * 119.99763 * 179.97438 * 13 12 11 20 20 H 0.96994 * 119.99482 * 359.97188 * 13 12 11 21 21 H 1.07993 * 120.68398 * 180.02562 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 1.2771 2.7464 -0.0006 5 1 3.0957 1.6964 1.2126 6 1 3.0959 1.6963 -1.2124 7 6 2.0080 -1.2123 0.0060 8 1 1.4702 -2.1460 0.0794 9 6 3.4153 -1.2144 -0.0839 10 7 4.0843 -0.0569 -0.0434 11 6 5.3942 -0.0196 -0.1192 12 6 6.1362 -1.1969 -0.2567 13 7 7.5214 -1.1462 -0.3411 14 6 5.4713 -2.4250 -0.3081 15 6 4.1051 -2.4356 -0.2209 16 35 3.1549 -4.0693 -0.2842 17 1 -0.4850 -0.8367 -0.0754 18 1 5.9044 0.9314 -0.0792 19 1 8.0318 -1.9656 -0.4360 20 1 7.9785 -0.2914 -0.3050 21 1 6.0238 -3.3469 -0.4135 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307138709.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:36 Heat of formation + Delta-G solvation = -4.058191 kcal Electronic energy + Delta-G solvation = -10226.516145 eV Core-core repulsion = 8146.756532 eV Total energy + Delta-G solvation = -2079.759612 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.65226 -36.41400 -34.91828 -33.64935 -30.84725 -30.34500 -26.35905 -24.20501 -22.60637 -20.37903 -18.11946 -17.63081 -16.75594 -15.88077 -15.56922 -15.03438 -14.50501 -14.09733 -13.80201 -13.19125 -12.89097 -12.18269 -11.93570 -11.80208 -11.59080 -11.14188 -10.66111 -9.86820 -9.71442 -9.24003 -8.73130 -6.45815 0.47228 0.80196 1.10458 1.65277 1.77060 2.11322 2.50272 2.69836 3.36836 3.52328 4.02441 4.13786 4.46160 4.73882 5.09381 5.20662 5.53356 5.62026 6.12846 6.23452 6.68664 6.86540 7.29309 7.50815 8.05307 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.016111 C = 0.009473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.714780 B = 1737.554123 C = 2955.002683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.013 3.987 3 Si 1.190 2.810 4 H -0.336 1.336 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.507 4.507 8 H 0.082 0.918 9 C 0.218 3.782 10 N -0.554 5.554 11 C 0.079 3.921 12 C 0.061 3.939 13 N -0.866 5.866 14 C -0.083 4.083 15 C -0.207 4.207 16 Br -0.069 7.069 17 H 0.278 0.722 18 H 0.166 0.834 19 H 0.402 0.598 20 H 0.404 0.596 21 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.803 -4.610 -0.908 12.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.202 4.202 3 Si 1.024 2.976 4 H -0.270 1.270 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.541 4.541 8 H 0.100 0.900 9 C 0.091 3.909 10 N -0.272 5.272 11 C -0.085 4.085 12 C -0.045 4.045 13 N -0.412 5.412 14 C -0.114 4.114 15 C -0.291 4.291 16 Br 0.015 6.985 17 H 0.089 0.911 18 H 0.184 0.816 19 H 0.231 0.769 20 H 0.233 0.767 21 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.588 -2.951 -0.772 11.018 hybrid contribution 0.663 -2.421 -0.117 2.513 sum 11.251 -5.372 -0.889 12.499 Atomic orbital electron populations 1.70690 1.08532 1.32420 1.34331 1.28462 0.95595 1.07809 0.88379 0.81306 0.69659 0.67795 0.78824 1.26989 1.21629 1.21670 1.20824 0.91291 0.96660 1.45278 0.90037 1.18423 0.93975 0.86672 0.91812 1.66326 1.09946 1.26977 1.23982 1.22543 0.89072 0.97809 0.99118 1.18141 0.86711 0.92770 1.06883 1.41531 1.01043 1.11505 1.87100 1.20498 0.91712 0.97588 1.01626 1.21938 0.94821 0.91069 1.21244 1.96317 1.77834 1.26335 1.98043 0.91107 0.81649 0.76950 0.76651 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.63 13.65 21.83 0.30 -47.33 14 2 C 0.01 0.74 5.52 85.27 0.47 1.21 14 3 Si 1.19 58.27 25.45 68.60 1.75 60.02 14 4 H -0.34 -16.29 7.11 99.48 0.71 -15.58 14 5 H -0.29 -13.82 6.98 99.48 0.69 -13.13 14 6 H -0.29 -13.82 6.89 99.48 0.69 -13.14 14 7 C -0.51 -28.31 9.19 23.38 0.21 -28.09 14 8 H 0.08 4.63 6.59 -2.91 -0.02 4.61 14 9 C 0.22 11.21 6.42 40.19 0.26 11.47 14 10 N -0.55 -26.77 4.50 -188.34 -0.85 -27.62 14 11 C 0.08 3.06 11.07 85.16 0.94 4.00 14 12 C 0.06 2.07 6.80 38.78 0.26 2.33 14 13 N -0.87 -19.80 9.05 -50.77 -0.46 -20.26 14 14 C -0.08 -3.07 9.71 22.32 0.22 -2.86 14 15 C -0.21 -9.28 6.26 22.62 0.14 -9.14 14 16 Br -0.07 -2.78 31.89 -20.37 -0.65 -3.43 14 17 H 0.28 15.48 8.73 -92.71 -0.81 14.67 14 18 H 0.17 5.16 8.06 -2.91 -0.02 5.14 14 19 H 0.40 7.39 8.84 -92.71 -0.82 6.57 14 20 H 0.40 7.27 8.84 -92.71 -0.82 6.45 14 21 H 0.14 4.37 8.06 -2.91 -0.02 4.35 14 Total: -1.00 -61.92 209.62 2.17 -59.75 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -0.43 Total: -0.06 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 2.51 Total: -21.08 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -1.01 Total: -95.21 kcal Atomic # 14 Polarization: 58.27 SS G_CDS: 1.75 Total: 60.02 kcal Atomic # 35 Polarization: -2.78 SS G_CDS: -0.65 Total: -3.43 kcal Total: -61.92 2.17 -59.75 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307138709.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.697 kcal (2) G-P(sol) polarization free energy of solvation -61.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds