Wall clock time and date at job start Mon Mar 30 2020 05:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30772 * 1 3 3 Si 1.86803 * 120.00204 * 2 1 4 4 H 1.48506 * 109.46875 * 275.28623 * 3 2 1 5 5 H 1.48494 * 109.46960 * 35.28148 * 3 2 1 6 6 H 1.48497 * 109.47334 * 155.28289 * 3 2 1 7 7 C 1.40060 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99651 * 341.43317 * 7 2 1 9 9 C 1.41028 * 120.00340 * 161.43366 * 7 2 1 10 10 C 1.41882 * 121.08847 * 315.07879 * 9 7 2 11 11 N 1.38750 * 120.67738 * 0.02562 * 10 9 7 12 12 C 1.38823 * 118.64251 * 180.23641 * 10 9 7 13 13 N 1.31783 * 120.87936 * 359.50570 * 12 10 9 14 14 C 1.32128 * 122.46281 * 0.25116 * 13 12 10 15 15 C 1.37631 * 121.25252 * 0.02562 * 14 13 12 16 16 Br 1.89095 * 120.53289 * 179.97438 * 15 14 13 17 17 H 0.97003 * 120.00261 * 359.97438 * 1 2 3 18 18 H 0.96997 * 120.00058 * 180.22376 * 11 10 9 19 19 H 0.96996 * 119.99464 * 0.22768 * 11 10 9 20 20 H 1.08000 * 119.55737 * 179.77903 * 12 10 9 21 21 H 1.08000 * 119.37568 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.3776 2.1109 -1.3942 5 1 1.4995 2.6178 0.8087 6 1 3.5907 1.4105 0.5854 7 6 2.0081 -1.2129 -0.0005 8 1 1.5102 -2.1241 0.2969 9 6 3.3633 -1.2446 -0.3894 10 6 3.8114 -0.5481 -1.5414 11 7 2.9232 0.1844 -2.3159 12 6 5.1558 -0.6180 -1.8804 13 7 6.0038 -1.3080 -1.1445 14 6 5.6303 -1.9669 -0.0618 15 6 4.3195 -1.9665 0.3577 16 35 3.8073 -2.9171 1.9100 17 1 -0.4851 0.8400 0.0004 18 1 3.2396 0.6542 -3.1033 19 1 1.9859 0.2267 -2.0698 20 1 5.5122 -0.0964 -2.7563 21 1 6.3677 -2.5161 0.5048 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307180335.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:35 Heat of formation + Delta-G solvation = 32.006979 kcal Electronic energy + Delta-G solvation = -10452.309950 eV Core-core repulsion = 8374.114241 eV Total energy + Delta-G solvation = -2078.195709 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.91759 -34.87523 -33.21079 -31.73845 -29.30608 -27.76693 -25.78385 -21.41397 -21.31194 -18.19039 -16.48214 -15.61975 -15.34714 -14.33519 -13.94801 -13.24510 -12.96062 -12.74274 -11.67657 -11.55725 -11.12510 -10.79496 -10.38099 -10.01211 -9.87335 -9.20489 -9.10791 -8.34052 -7.87237 -7.04678 -6.73771 -4.61499 2.19068 2.53326 2.92827 3.04695 3.11826 3.21601 3.85701 4.41418 4.84115 5.10778 5.59350 6.02411 6.26240 6.42034 6.61764 6.99668 7.23061 7.55482 8.08787 8.24196 8.44846 8.53646 8.67731 9.19035 9.98582 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.027711 B = 0.015710 C = 0.011219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.198247 B = 1781.837432 C = 2495.157724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.079 3.921 3 Si 0.905 3.095 4 H -0.255 1.255 5 H -0.292 1.292 6 H -0.256 1.256 7 C -0.450 4.450 8 H 0.104 0.896 9 C 0.083 3.917 10 C 0.095 3.905 11 N -0.870 5.870 12 C 0.019 3.981 13 N -0.516 5.516 14 C 0.093 3.907 15 C -0.189 4.189 16 Br -0.079 7.079 17 H 0.285 0.715 18 H 0.386 0.614 19 H 0.402 0.598 20 H 0.130 0.870 21 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.790 -0.301 0.328 3.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.180 1.180 5 H -0.220 1.220 6 H -0.179 1.179 7 C -0.482 4.482 8 H 0.121 0.879 9 C 0.070 3.930 10 C -0.012 4.012 11 N -0.416 5.416 12 C -0.138 4.138 13 N -0.229 5.229 14 C -0.069 4.069 15 C -0.274 4.274 16 Br 0.005 6.995 17 H 0.096 0.904 18 H 0.213 0.787 19 H 0.235 0.765 20 H 0.147 0.853 21 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.231 -0.588 0.652 4.321 hybrid contribution -0.853 1.140 -0.288 1.453 sum 3.379 0.553 0.364 3.443 Atomic orbital electron populations 1.69678 1.07835 1.30162 1.35367 1.26054 0.94735 1.01226 0.91922 0.86571 0.81076 0.80089 0.79190 1.18031 1.21989 1.17911 1.19135 0.92229 0.96792 1.40066 0.87869 1.17491 0.93743 0.91719 0.90046 1.19030 0.90906 0.98747 0.92521 1.42514 1.10716 1.57303 1.31075 1.21659 0.88281 1.02877 1.00935 1.67340 1.37034 1.11364 1.07149 1.21826 0.92420 0.98448 0.94214 1.22639 0.95503 1.12125 0.97135 1.96347 1.93562 1.74008 1.35626 0.90410 0.78658 0.76506 0.85279 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.16 13.92 55.55 0.77 -19.38 14 2 C 0.08 1.94 4.14 -17.32 -0.07 1.87 14 3 Si 0.91 19.90 24.23 -169.99 -4.12 15.79 14 4 H -0.26 -5.08 6.09 56.52 0.34 -4.74 14 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 14 6 H -0.26 -6.14 7.11 56.52 0.40 -5.74 14 7 C -0.45 -11.55 8.38 -37.84 -0.32 -11.86 14 8 H 0.10 2.85 7.85 -52.48 -0.41 2.44 14 9 C 0.08 2.02 4.66 -106.32 -0.50 1.52 14 10 C 0.09 2.12 5.35 -83.12 -0.45 1.67 14 11 N -0.87 -17.14 6.31 32.81 0.21 -16.93 14 12 C 0.02 0.41 11.05 -17.36 -0.19 0.21 14 13 N -0.52 -11.48 10.32 -13.20 -0.14 -11.61 14 14 C 0.09 2.04 10.90 -17.65 -0.19 1.85 14 15 C -0.19 -4.38 6.30 -38.68 -0.24 -4.62 14 16 Br -0.08 -1.64 32.66 -68.01 -2.22 -3.86 14 17 H 0.29 6.50 8.30 -40.82 -0.34 6.16 14 18 H 0.39 6.22 8.85 -40.82 -0.36 5.86 14 19 H 0.40 8.35 5.12 -40.82 -0.21 8.14 14 20 H 0.13 2.34 8.06 -52.49 -0.42 1.92 14 21 H 0.13 2.56 8.06 -52.49 -0.42 2.13 14 LS Contribution 204.76 15.07 3.09 3.09 Total: -1.00 -26.69 204.76 -5.39 -32.08 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -1.02 Total: 10.19 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -1.96 Total: -9.36 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.84 Total: -47.93 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.12 Total: 15.79 kcal Atomic # 35 Polarization: -1.64 SS G_CDS: -2.22 Total: -3.86 kcal Total LS contribution 3.09 Total: 3.09 kcal Total: -26.69 -5.39 -32.08 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307180335.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.086 kcal (2) G-P(sol) polarization free energy of solvation -26.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds