Wall clock time and date at job start Mon Mar 30 2020 05:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30772 * 1 3 3 Si 1.86803 * 120.00204 * 2 1 4 4 H 1.48506 * 109.46875 * 275.28623 * 3 2 1 5 5 H 1.48494 * 109.46960 * 35.28148 * 3 2 1 6 6 H 1.48497 * 109.47334 * 155.28289 * 3 2 1 7 7 C 1.40060 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99651 * 341.43317 * 7 2 1 9 9 C 1.41028 * 120.00340 * 161.43366 * 7 2 1 10 10 C 1.41882 * 121.08847 * 315.07879 * 9 7 2 11 11 N 1.38750 * 120.67738 * 0.02562 * 10 9 7 12 12 C 1.38823 * 118.64251 * 180.23641 * 10 9 7 13 13 N 1.31783 * 120.87936 * 359.50570 * 12 10 9 14 14 C 1.32128 * 122.46281 * 0.25116 * 13 12 10 15 15 C 1.37631 * 121.25252 * 0.02562 * 14 13 12 16 16 Br 1.89095 * 120.53289 * 179.97438 * 15 14 13 17 17 H 0.97003 * 120.00261 * 359.97438 * 1 2 3 18 18 H 0.96997 * 120.00058 * 180.22376 * 11 10 9 19 19 H 0.96996 * 119.99464 * 0.22768 * 11 10 9 20 20 H 1.08000 * 119.55737 * 179.77903 * 12 10 9 21 21 H 1.08000 * 119.37568 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.3776 2.1109 -1.3942 5 1 1.4995 2.6178 0.8087 6 1 3.5907 1.4105 0.5854 7 6 2.0081 -1.2129 -0.0005 8 1 1.5102 -2.1241 0.2969 9 6 3.3633 -1.2446 -0.3894 10 6 3.8114 -0.5481 -1.5414 11 7 2.9232 0.1844 -2.3159 12 6 5.1558 -0.6180 -1.8804 13 7 6.0038 -1.3080 -1.1445 14 6 5.6303 -1.9669 -0.0618 15 6 4.3195 -1.9665 0.3577 16 35 3.8073 -2.9171 1.9100 17 1 -0.4851 0.8400 0.0004 18 1 3.2396 0.6542 -3.1033 19 1 1.9859 0.2267 -2.0698 20 1 5.5122 -0.0964 -2.7563 21 1 6.3677 -2.5161 0.5048 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307180335.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:34 Heat of formation + Delta-G solvation = 13.466738 kcal Electronic energy + Delta-G solvation = -10453.113915 eV Core-core repulsion = 8374.114241 eV Total energy + Delta-G solvation = -2078.999674 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.65129 -36.60718 -34.96740 -33.51693 -31.05031 -29.46265 -27.59898 -23.13466 -23.08573 -20.00302 -18.18294 -17.31188 -17.09443 -16.08614 -15.63494 -15.00395 -14.73223 -14.43456 -13.47605 -13.27349 -12.83902 -12.60745 -12.14706 -11.75966 -11.65448 -10.90110 -10.84121 -10.09048 -9.64634 -8.87322 -8.42132 -6.49482 0.43518 0.76958 1.18160 1.29762 1.38724 1.43787 2.07611 2.61082 3.21291 3.35437 3.99020 4.36656 4.50333 4.73886 4.89241 5.23246 5.47877 5.86788 6.17790 6.40453 6.67836 6.74051 7.14693 7.45063 8.20813 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.027711 B = 0.015710 C = 0.011219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.198247 B = 1781.837432 C = 2495.157724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.056 3.944 3 Si 0.950 3.050 4 H -0.220 1.220 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.473 4.473 8 H 0.069 0.931 9 C 0.057 3.943 10 C 0.091 3.909 11 N -0.862 5.862 12 C 0.021 3.979 13 N -0.517 5.517 14 C 0.085 3.915 15 C -0.201 4.201 16 Br -0.064 7.064 17 H 0.294 0.706 18 H 0.405 0.595 19 H 0.398 0.602 20 H 0.167 0.833 21 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 0.648 -0.620 5.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.159 4.159 3 Si 0.774 3.226 4 H -0.143 1.143 5 H -0.218 1.218 6 H -0.210 1.210 7 C -0.505 4.505 8 H 0.087 0.913 9 C 0.044 3.956 10 C -0.017 4.017 11 N -0.408 5.408 12 C -0.137 4.137 13 N -0.229 5.229 14 C -0.077 4.077 15 C -0.285 4.285 16 Br 0.020 6.980 17 H 0.105 0.895 18 H 0.236 0.764 19 H 0.230 0.770 20 H 0.184 0.816 21 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.451 0.365 -0.326 5.473 hybrid contribution -1.126 0.753 0.016 1.354 sum 4.325 1.118 -0.311 4.478 Atomic orbital electron populations 1.69692 1.08731 1.31284 1.36918 1.26490 0.95099 1.02926 0.91398 0.85928 0.78235 0.77601 0.80837 1.14280 1.21802 1.20952 1.18956 0.93130 0.96164 1.42296 0.91284 1.17705 0.93537 0.93163 0.91169 1.19150 0.91825 0.98539 0.92151 1.42475 1.10169 1.56785 1.31410 1.22225 0.87698 1.02195 1.01574 1.67424 1.37344 1.11013 1.07092 1.22191 0.92421 0.98626 0.94450 1.22982 0.96105 1.11715 0.97740 1.96337 1.93642 1.73498 1.34540 0.89536 0.76405 0.76981 0.81634 0.82552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.26 13.92 21.85 0.30 -41.95 14 2 C 0.06 2.75 4.14 85.29 0.35 3.10 14 3 Si 0.95 39.89 24.23 68.60 1.66 41.55 14 4 H -0.22 -7.87 6.09 99.48 0.61 -7.26 14 5 H -0.29 -12.01 7.11 99.48 0.71 -11.30 14 6 H -0.28 -13.26 7.11 99.48 0.71 -12.56 14 7 C -0.47 -24.53 8.38 23.40 0.20 -24.34 14 8 H 0.07 3.96 7.85 -2.91 -0.02 3.94 14 9 C 0.06 2.75 4.66 -20.97 -0.10 2.66 14 10 C 0.09 3.86 5.35 39.09 0.21 4.07 14 11 N -0.86 -31.59 6.31 -50.12 -0.32 -31.90 14 12 C 0.02 0.81 11.05 84.84 0.94 1.75 14 13 N -0.52 -21.48 10.32 -195.69 -2.02 -23.50 14 14 C 0.09 3.55 10.90 84.50 0.92 4.47 14 15 C -0.20 -9.12 6.30 22.85 0.14 -8.97 14 16 Br -0.06 -2.62 32.66 -20.37 -0.67 -3.28 14 17 H 0.29 13.34 8.30 -92.71 -0.77 12.57 14 18 H 0.41 11.51 8.85 -92.71 -0.82 10.69 14 19 H 0.40 15.74 5.12 -92.71 -0.47 15.27 14 20 H 0.17 5.21 8.06 -2.91 -0.02 5.19 14 21 H 0.16 5.65 8.06 -2.91 -0.02 5.62 14 Total: -1.00 -55.71 204.76 1.51 -54.20 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -0.11 Total: 22.16 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 2.66 Total: -17.26 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -2.03 Total: -97.36 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.66 Total: 41.55 kcal Atomic # 35 Polarization: -2.62 SS G_CDS: -0.67 Total: -3.28 kcal Total: -55.71 1.51 -54.20 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307180335.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.664 kcal (2) G-P(sol) polarization free energy of solvation -55.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds