Wall clock time and date at job start Mon Mar 30 2020 05:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48499 * 109.46826 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47435 * 299.99667 * 3 2 1 6 6 H 1.48497 * 109.47108 * 60.00251 * 3 2 1 7 7 C 1.37879 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99667 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00124 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46917 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99608 * 179.97438 * 10 9 7 12 12 S 1.71193 * 120.00256 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99787 * 180.02562 * 11 10 9 14 14 C 1.40759 * 120.00132 * 185.47148 * 13 11 10 15 15 C 1.38797 * 122.61980 * 218.62741 * 14 13 11 16 16 C 1.33376 * 114.88978 * 180.02562 * 15 14 13 17 17 S 1.75858 * 109.70392 * 359.72675 * 16 15 14 18 18 C 1.33802 * 122.62107 * 38.64284 * 14 13 11 19 19 H 0.97001 * 119.99846 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47233 * 59.99869 * 9 7 2 21 21 H 1.09007 * 109.47044 * 300.00012 * 9 7 2 22 22 H 0.96991 * 120.00325 * 0.02562 * 10 9 7 23 23 H 0.97009 * 120.00004 * 5.46837 * 13 11 10 24 24 H 1.08002 * 122.55357 * 0.03666 * 15 14 13 25 25 H 1.08003 * 125.14546 * 180.02562 * 16 15 14 26 26 H 1.07995 * 125.19361 * 359.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7537 -4.8834 0.0011 12 16 0.0706 -5.1962 0.0011 13 7 2.6295 -5.9078 0.0016 14 6 2.1646 -7.2313 -0.1141 15 6 2.7240 -8.2855 0.5946 16 6 2.1640 -9.4745 0.3674 17 16 0.8519 -9.3004 -0.7905 18 6 1.1491 -7.5716 -0.9161 19 1 -0.4850 0.8401 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 3.1566 -3.4354 0.0009 23 1 3.5804 -5.7329 0.0816 24 1 3.5496 -8.1530 1.2781 25 1 2.4671 -10.4028 0.8287 26 1 0.5938 -6.8882 -1.5413 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307386590.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:51 Heat of formation + Delta-G solvation = 32.354754 kcal Electronic energy + Delta-G solvation = -12455.129361 eV Core-core repulsion = 10172.006090 eV Total energy + Delta-G solvation = -2283.123271 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76741 -38.47329 -35.68818 -34.30888 -30.20212 -29.26651 -26.11870 -24.58866 -23.81948 -20.89600 -20.05274 -18.99185 -18.08373 -17.63496 -16.76219 -16.41985 -15.92066 -15.48535 -14.67694 -14.44417 -14.21808 -13.82695 -13.49572 -13.10558 -12.89387 -12.70008 -12.31003 -12.25540 -11.79699 -11.53982 -11.00424 -10.51053 -9.73498 -9.18294 -8.91459 -8.34585 -8.23861 -6.50615 -0.03461 0.46373 0.66664 0.92759 1.10290 1.42330 1.43333 1.55434 1.64874 1.92692 2.35014 2.73681 3.03420 4.12234 4.39993 4.59928 4.83109 4.92573 5.00950 5.18805 5.22646 5.31587 5.50010 5.72729 5.81077 6.05269 6.47102 6.68362 7.21510 8.79141 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.067200 B = 0.004832 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.567296 B = 5792.731774 C = 6099.812836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.983 3.017 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.566 4.566 8 H 0.085 0.915 9 C 0.274 3.726 10 N -0.637 5.637 11 C 0.573 3.427 12 S -0.734 6.734 13 N -0.605 5.605 14 C 0.086 3.914 15 C -0.141 4.141 16 C -0.201 4.201 17 S 0.136 5.864 18 C -0.192 4.192 19 H 0.270 0.730 20 H 0.014 0.986 21 H 0.013 0.987 22 H 0.412 0.588 23 H 0.425 0.575 24 H 0.168 0.832 25 H 0.202 0.798 26 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.053 -16.230 -0.146 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.190 4.190 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.604 4.604 8 H 0.103 0.897 9 C 0.153 3.847 10 N -0.261 5.261 11 C 0.207 3.793 12 S -0.608 6.608 13 N -0.235 5.235 14 C -0.019 4.019 15 C -0.172 4.172 16 C -0.337 4.337 17 S 0.397 5.603 18 C -0.333 4.333 19 H 0.079 0.921 20 H 0.032 0.968 21 H 0.031 0.969 22 H 0.251 0.749 23 H 0.267 0.733 24 H 0.185 0.815 25 H 0.219 0.781 26 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.687 -17.164 -0.801 19.254 hybrid contribution 2.257 2.438 0.660 3.388 sum 10.944 -14.726 -0.141 18.348 Atomic orbital electron populations 1.70150 1.08125 1.28661 1.48925 1.25970 0.95718 1.03613 0.93705 0.85132 0.79030 0.77497 0.77685 1.17693 1.20517 1.20524 1.21579 0.94318 0.90299 1.54213 0.89717 1.19028 0.87574 0.81276 0.96866 1.45457 1.12235 1.03055 1.65333 1.21755 0.93844 0.83054 0.80613 1.93335 0.98252 1.90821 1.78368 1.41861 1.08849 1.02273 1.70476 1.16709 1.01291 0.82971 1.00937 1.19952 1.04380 0.90619 1.02283 1.25741 1.00272 1.02700 1.04980 1.84130 1.33924 0.99981 1.42295 1.26010 1.02821 0.99514 1.04948 0.92091 0.96778 0.96889 0.74906 0.73342 0.81467 0.78053 0.82620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.11 13.29 21.45 0.28 -53.82 15 2 C 0.01 0.59 5.46 84.66 0.46 1.05 15 3 Si 0.98 40.96 29.54 68.60 2.03 42.99 15 4 H -0.25 -9.70 7.11 99.48 0.71 -8.99 15 5 H -0.28 -11.54 7.11 99.48 0.71 -10.83 15 6 H -0.28 -11.54 7.11 99.48 0.71 -10.84 15 7 C -0.57 -29.15 9.28 25.60 0.24 -28.91 15 8 H 0.08 3.90 7.60 -2.91 -0.02 3.88 15 9 C 0.27 14.14 4.88 85.63 0.42 14.56 15 10 N -0.64 -24.72 5.55 -353.91 -1.97 -26.69 15 11 C 0.57 21.85 7.84 179.05 1.40 23.26 15 12 S -0.73 -35.63 25.08 -56.49 -1.42 -37.05 15 13 N -0.61 -16.63 5.44 -193.04 -1.05 -17.68 15 14 C 0.09 2.34 5.98 36.83 0.22 2.56 15 15 C -0.14 -2.80 10.16 21.30 0.22 -2.58 15 16 C -0.20 -3.46 11.22 66.72 0.75 -2.71 15 17 S 0.14 3.00 23.33 -56.49 -1.32 1.69 15 18 C -0.19 -5.82 9.03 66.81 0.60 -5.22 15 19 H 0.27 14.85 8.31 -92.71 -0.77 14.08 15 20 H 0.01 0.84 7.99 -2.39 -0.02 0.82 15 21 H 0.01 0.77 7.99 -2.38 -0.02 0.76 15 22 H 0.41 12.57 8.34 -92.71 -0.77 11.80 15 23 H 0.43 7.91 8.85 -92.70 -0.82 7.09 15 24 H 0.17 2.34 8.06 -2.91 -0.02 2.31 15 25 H 0.20 1.95 8.06 -2.91 -0.02 1.93 15 26 H 0.16 5.74 6.37 -4.21 -0.03 5.72 15 Total: -1.00 -71.33 258.97 0.49 -70.84 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -0.38 Total: 17.72 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 4.31 Total: 2.01 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -2.73 Total: -98.19 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: -32.63 SS G_CDS: -2.73 Total: -35.37 kcal Total: -71.33 0.49 -70.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307386590.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.192 kcal (2) G-P(sol) polarization free energy of solvation -71.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds