Wall clock time and date at job start Mon Mar 30 2020 05:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86802 * 120.00021 * 2 1 4 4 H 1.48503 * 109.47182 * 275.29758 * 3 2 1 5 5 H 1.48500 * 109.47150 * 35.29211 * 3 2 1 6 6 H 1.48493 * 109.47150 * 155.29580 * 3 2 1 7 7 C 1.39945 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99719 * 342.54624 * 7 2 1 9 9 C 1.40996 * 119.99994 * 162.54163 * 7 2 1 10 10 C 1.41724 * 120.71764 * 313.89683 * 9 7 2 11 11 N 1.38109 * 119.89683 * 359.95764 * 10 9 7 12 12 N 1.32234 * 120.19772 * 180.22943 * 10 9 7 13 13 C 1.32035 * 121.89365 * 359.47750 * 12 10 9 14 14 C 1.38545 * 121.46755 * 0.53384 * 13 12 10 15 15 C 1.38200 * 119.61799 * 359.73304 * 14 13 12 16 16 Br 1.89095 * 120.87655 * 179.97438 * 15 14 13 17 17 H 0.96991 * 120.00324 * 359.97438 * 1 2 3 18 18 H 0.96996 * 120.00706 * 0.02562 * 11 10 9 19 19 H 0.97009 * 119.99549 * 179.72434 * 11 10 9 20 20 H 1.08003 * 119.26185 * 180.27088 * 13 12 10 21 21 H 1.08005 * 120.19251 * 179.76664 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3784 2.1111 -1.3941 5 1 1.5006 2.6178 0.8089 6 1 3.5918 1.4105 0.5851 7 6 2.0086 -1.2119 0.0005 8 1 1.5058 -2.1256 0.2815 9 6 3.3698 -1.2402 -0.3658 10 6 3.8237 -0.5517 -1.5184 11 7 2.9274 0.1554 -2.2955 12 7 5.1020 -0.5889 -1.8550 13 6 5.9933 -1.2485 -1.1381 14 6 5.6306 -1.9470 0.0021 15 6 4.3094 -1.9539 0.4076 16 35 3.7750 -2.8961 1.9575 17 1 -0.4850 0.8399 0.0004 18 1 1.9888 0.1807 -2.0520 19 1 3.2372 0.6304 -3.0826 20 1 7.0273 -1.2468 -1.4498 21 1 6.3762 -2.4827 0.5710 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307535823.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:47 Heat of formation + Delta-G solvation = 18.092347 kcal Electronic energy + Delta-G solvation = -10464.865235 eV Core-core repulsion = 8386.066142 eV Total energy + Delta-G solvation = -2078.799093 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.70047 -36.28176 -35.05121 -33.54438 -31.04702 -30.20698 -27.18377 -23.12264 -23.01325 -19.95274 -18.01942 -17.82182 -17.09023 -15.79469 -15.52786 -15.10616 -14.75737 -14.32409 -13.47858 -13.23237 -12.97776 -12.59110 -12.22413 -11.92837 -11.41592 -10.81346 -10.72974 -10.18858 -9.79477 -8.85076 -8.56001 -6.41117 0.48682 0.70847 1.09916 1.29861 1.35691 1.41814 2.07196 2.59407 2.99120 3.34550 4.15950 4.51202 4.54710 4.78136 5.06845 5.33879 5.39848 5.88974 6.18525 6.38294 6.64592 6.73664 6.90068 7.62487 8.25968 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.027693 B = 0.015781 C = 0.011266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.825328 B = 1773.814941 C = 2484.827950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.054 3.946 3 Si 0.945 3.055 4 H -0.228 1.228 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.473 4.473 8 H 0.069 0.931 9 C -0.006 4.006 10 C 0.327 3.673 11 N -0.845 5.845 12 N -0.542 5.542 13 C 0.047 3.953 14 C -0.171 4.171 15 C -0.127 4.127 16 Br -0.062 7.062 17 H 0.292 0.708 18 H 0.409 0.591 19 H 0.403 0.597 20 H 0.179 0.821 21 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.795 -0.752 0.735 6.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.159 4.159 3 Si 0.770 3.230 4 H -0.152 1.152 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.505 4.505 8 H 0.087 0.913 9 C -0.015 4.015 10 C 0.085 3.915 11 N -0.397 5.397 12 N -0.261 5.261 13 C -0.107 4.107 14 C -0.195 4.195 15 C -0.214 4.214 16 Br 0.023 6.977 17 H 0.103 0.897 18 H 0.243 0.757 19 H 0.233 0.767 20 H 0.196 0.804 21 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.642 -0.623 0.616 6.699 hybrid contribution -0.465 0.368 0.440 0.738 sum 6.177 -0.255 1.056 6.272 Atomic orbital electron populations 1.69722 1.08436 1.30994 1.38098 1.26384 0.95100 1.02531 0.91893 0.85981 0.78255 0.78293 0.80498 1.15174 1.21383 1.21178 1.18868 0.92629 0.95907 1.43109 0.91305 1.18106 0.94449 0.96412 0.92569 1.18749 0.88124 0.95301 0.89283 1.42340 1.09476 1.56850 1.31044 1.66842 1.00967 1.23611 1.34714 1.22414 0.98714 0.96608 0.92931 1.21700 0.94239 1.03644 0.99912 1.22326 0.95268 1.08086 0.95712 1.96368 1.93187 1.73712 1.34404 0.89696 0.75680 0.76709 0.80450 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.30 13.93 21.83 0.30 -42.99 14 2 C 0.05 2.73 4.11 85.25 0.35 3.08 14 3 Si 0.95 41.30 24.22 68.60 1.66 42.97 14 4 H -0.23 -8.83 6.16 99.48 0.61 -8.22 14 5 H -0.29 -12.17 7.11 99.48 0.71 -11.46 14 6 H -0.29 -13.82 7.11 99.48 0.71 -13.12 14 7 C -0.47 -24.87 8.29 23.36 0.19 -24.67 14 8 H 0.07 3.98 7.87 -2.91 -0.02 3.95 14 9 C -0.01 -0.28 4.63 -21.04 -0.10 -0.38 14 10 C 0.33 14.96 6.32 134.06 0.85 15.81 14 11 N -0.85 -34.47 6.28 -54.41 -0.34 -34.81 14 12 N -0.54 -23.11 10.37 -191.51 -1.99 -25.10 14 13 C 0.05 1.75 11.16 84.74 0.95 2.70 14 14 C -0.17 -6.56 9.86 22.33 0.22 -6.34 14 15 C -0.13 -5.68 6.32 22.96 0.15 -5.54 14 16 Br -0.06 -2.50 32.70 -20.37 -0.67 -3.17 14 17 H 0.29 13.56 8.30 -92.71 -0.77 12.79 14 18 H 0.41 17.26 5.09 -92.71 -0.47 16.78 14 19 H 0.40 13.94 8.95 -92.70 -0.83 13.11 14 20 H 0.18 5.07 8.06 -2.91 -0.02 5.05 14 21 H 0.15 4.59 8.06 -2.91 -0.02 4.57 14 Total: -1.00 -56.45 204.90 1.46 -54.98 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.11 Total: 23.46 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 2.60 Total: -15.34 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -2.02 Total: -102.91 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.66 Total: 42.97 kcal Atomic # 35 Polarization: -2.50 SS G_CDS: -0.67 Total: -3.17 kcal Total: -56.45 1.46 -54.98 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307535823.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.076 kcal (2) G-P(sol) polarization free energy of solvation -56.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds