Wall clock time and date at job start Mon Mar 30 2020 05:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48504 * 109.47118 * 239.99959 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00065 * 3 2 1 7 7 C 1.40050 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.40893 * 119.99928 * 0.28194 * 7 2 1 10 10 N 1.33746 * 119.91307 * 359.44399 * 9 7 2 11 11 C 1.31329 * 121.61383 * 179.71137 * 10 9 7 12 12 C 1.38987 * 121.26276 * 0.57316 * 11 10 9 13 13 C 1.38546 * 119.68593 * 359.71952 * 12 11 10 14 14 Br 1.89102 * 120.74853 * 179.97438 * 13 12 11 15 15 C 1.39412 * 118.49631 * 359.97438 * 13 12 11 16 16 N 1.38574 * 120.61408 * 180.02562 * 15 13 12 17 17 H 0.96996 * 120.00391 * 0.02562 * 1 2 3 18 18 H 1.07991 * 119.36971 * 180.29386 * 11 10 9 19 19 H 1.08004 * 120.15649 * 179.69760 * 12 11 10 20 20 H 0.97001 * 120.00042 * 179.97438 * 16 15 13 21 21 H 0.97000 * 120.00757 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.0955 1.6965 -1.2125 5 1 1.2767 2.7465 -0.0006 6 1 3.0955 1.6965 1.2124 7 6 2.0080 -1.2128 0.0005 8 1 3.0881 -1.2128 0.0001 9 6 1.3036 -2.4330 -0.0049 10 7 -0.0338 -2.4311 0.0006 11 6 -0.7239 -3.5484 -0.0098 12 6 -0.0921 -4.7864 -0.0153 13 6 1.2918 -4.8504 -0.0155 14 35 2.1825 -6.5185 -0.0222 15 6 2.0129 -3.6572 -0.0108 16 7 3.3986 -3.6701 -0.0114 17 1 -0.4850 0.8400 -0.0004 18 1 -1.8029 -3.5045 -0.0096 19 1 -0.6773 -5.6941 -0.0189 20 1 3.8913 -2.8346 -0.0084 21 1 3.8759 -4.5145 -0.0147 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307652578.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:51 Heat of formation + Delta-G solvation = 31.870287 kcal Electronic energy + Delta-G solvation = -10205.287788 eV Core-core repulsion = 8127.086152 eV Total energy + Delta-G solvation = -2078.201637 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.40530 -33.90583 -33.71322 -31.21399 -28.99754 -27.78448 -25.58999 -21.48646 -21.02033 -17.39128 -16.54636 -15.71815 -14.92761 -14.25144 -13.46490 -12.81275 -12.79034 -11.98429 -11.50904 -11.30849 -11.13629 -10.52636 -10.41079 -10.12078 -9.86109 -9.46742 -9.31678 -7.89451 -7.66471 -6.73580 -6.44480 -4.39662 2.63737 2.64932 2.86552 3.05913 3.07084 3.14528 3.90798 4.70248 4.98427 5.79090 6.14730 6.25507 6.53849 6.84453 7.06072 7.09834 7.35229 7.75895 8.10181 8.26231 8.61769 8.74182 8.89700 10.07107 10.28560 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.056720 B = 0.008284 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.535246 B = 3379.042644 C = 3862.730746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.430 4.430 8 H 0.081 0.919 9 C 0.232 3.768 10 N -0.465 5.465 11 C 0.085 3.915 12 C -0.256 4.256 13 C -0.111 4.111 14 Br -0.105 7.105 15 C 0.109 3.891 16 N -0.871 5.871 17 H 0.274 0.726 18 H 0.123 0.877 19 H 0.101 0.899 20 H 0.395 0.605 21 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.144 -5.947 -0.041 7.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.156 4.156 3 Si 0.732 3.268 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.463 4.463 8 H 0.099 0.901 9 C 0.099 3.901 10 N -0.179 5.179 11 C -0.077 4.077 12 C -0.281 4.281 13 C -0.201 4.201 14 Br -0.021 7.021 15 C -0.001 4.001 16 N -0.414 5.414 17 H 0.085 0.915 18 H 0.141 0.859 19 H 0.120 0.880 20 H 0.225 0.775 21 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.741 -5.622 -0.032 6.753 hybrid contribution 0.928 0.117 -0.011 0.935 sum 4.668 -5.505 -0.043 7.218 Atomic orbital electron populations 1.70122 1.07081 1.27894 1.28489 1.25958 0.94913 1.00790 0.93953 0.86390 0.80065 0.80612 0.79770 1.19016 1.20168 1.19005 1.19185 0.93814 0.89340 1.43962 0.90098 1.18419 0.88433 0.89569 0.93670 1.68671 1.05815 1.26323 1.17078 1.22354 0.98813 0.87911 0.98613 1.20984 0.91706 0.98493 1.16963 1.20946 0.94518 0.86604 1.17990 1.96350 1.79171 1.28272 1.98354 1.18693 0.84621 0.93305 1.03442 1.42027 1.03314 1.09686 1.86389 0.91488 0.85936 0.88041 0.77538 0.78874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.63 11.46 55.55 0.64 -17.99 14 2 C 0.07 1.71 5.50 -17.32 -0.10 1.61 14 3 Si 0.91 18.00 29.56 -169.99 -5.02 12.97 14 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 14 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 14 6 H -0.27 -5.19 7.11 56.52 0.40 -4.78 14 7 C -0.43 -10.94 8.89 -37.90 -0.34 -11.27 14 8 H 0.08 1.86 6.11 -52.49 -0.32 1.54 14 9 C 0.23 6.14 6.57 -84.79 -0.56 5.58 14 10 N -0.47 -12.66 7.85 -10.98 -0.09 -12.75 14 11 C 0.08 2.05 11.17 -17.49 -0.20 1.86 14 12 C -0.26 -5.83 9.89 -39.19 -0.39 -6.21 14 13 C -0.11 -2.52 6.29 -39.03 -0.25 -2.77 14 14 Br -0.11 -1.93 32.30 -68.01 -2.20 -4.12 14 15 C 0.11 2.59 6.81 -83.14 -0.57 2.02 14 16 N -0.87 -17.24 8.93 32.81 0.29 -16.95 14 17 H 0.27 6.50 8.29 -40.82 -0.34 6.16 14 18 H 0.12 2.64 8.06 -52.49 -0.42 2.22 14 19 H 0.10 2.08 8.06 -52.48 -0.42 1.66 14 20 H 0.40 7.33 6.83 -40.82 -0.28 7.05 14 21 H 0.38 6.78 7.36 -40.82 -0.30 6.48 14 LS Contribution 211.23 15.07 3.18 3.18 Total: -1.00 -27.86 211.23 -6.46 -34.31 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -0.88 Total: 10.52 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -2.38 Total: -9.18 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.84 Total: -47.69 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.02 Total: 12.97 kcal Atomic # 35 Polarization: -1.93 SS G_CDS: -2.20 Total: -4.12 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -27.86 -6.46 -34.31 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307652578.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.185 kcal (2) G-P(sol) polarization free energy of solvation -27.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds