Wall clock time and date at job start Mon Mar 30 2020 05:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31371 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47046 * 300.00261 * 3 2 1 6 6 H 1.48504 * 109.46917 * 60.00080 * 3 2 1 7 7 C 1.38878 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00021 * 179.97438 * 7 2 1 9 9 O 1.34791 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.34811 * 116.99973 * 179.97438 * 9 7 2 11 11 O 1.21588 * 119.99958 * 0.02562 * 10 9 7 12 12 C 1.46931 * 119.99590 * 179.97438 * 10 9 7 13 13 C 1.36800 * 125.16193 * 180.02562 * 12 10 9 14 14 C 1.36694 * 114.73316 * 180.02562 * 13 12 10 15 15 C 1.36743 * 114.75045 * 359.97438 * 14 13 12 16 16 C 1.46985 * 125.16175 * 180.02562 * 15 14 13 17 17 O 1.21554 * 119.99642 * 359.97438 * 16 15 14 18 18 O 1.34833 * 120.00478 * 180.02562 * 16 15 14 19 19 S 1.75839 * 125.16727 * 0.02562 * 12 10 9 20 20 H 0.96994 * 120.00044 * 359.97438 * 1 2 3 21 21 H 1.07997 * 122.63135 * 0.02562 * 13 12 10 22 22 H 1.08003 * 122.62616 * 180.02562 * 14 13 12 23 23 H 0.96694 * 117.00144 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7077 1.3464 -0.0006 5 1 1.8889 2.3964 -1.2125 6 1 1.8890 2.3964 1.2126 7 6 2.0081 -1.2027 -0.0005 8 1 3.0881 -1.2028 -0.0010 9 8 1.3342 -2.3701 -0.0005 10 6 2.0684 -3.5007 -0.0016 11 8 3.2827 -3.4370 -0.0021 12 6 1.4013 -4.8098 -0.0011 13 6 2.0401 -6.0195 -0.0016 14 6 1.2093 -7.1050 -0.0015 15 6 -0.1248 -6.8048 -0.0004 16 6 -1.2144 -7.7914 0.0004 17 8 -0.9583 -8.9796 -0.0003 18 8 -2.4979 -7.3784 0.0009 19 16 -0.3392 -5.0596 0.0002 20 1 -0.4850 0.8400 0.0004 21 1 3.1163 -6.1098 -0.0020 22 1 1.5777 -8.1203 -0.0015 23 1 -3.1797 -8.0640 0.0019 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308507514.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:08 Heat of formation + Delta-G solvation = -157.442941 kcal Electronic energy + Delta-G solvation = -14183.252932 eV Core-core repulsion = 11281.020699 eV Total energy + Delta-G solvation = -2902.232233 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.013 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.24352 -41.07932 -38.67690 -37.28142 -36.99464 -34.41437 -31.59335 -28.31235 -26.80734 -23.88069 -23.01122 -20.28726 -20.07588 -19.77178 -19.01674 -17.89447 -16.88076 -16.87726 -16.66304 -16.63417 -16.15676 -15.07729 -14.43721 -14.24193 -14.06669 -13.66220 -13.42954 -13.19659 -12.67500 -12.47070 -12.32958 -12.13327 -12.04135 -11.82319 -11.35455 -10.77453 -10.15983 -9.78644 -8.63082 -6.39204 -1.18212 0.17684 0.68945 0.75086 1.34938 1.38202 1.53823 1.67426 1.90188 1.97973 2.02518 2.54442 2.93288 3.97921 4.10292 4.21960 4.40624 4.82110 4.96888 5.10268 5.14405 5.42433 5.71502 6.45544 6.80502 6.85816 7.56546 8.56890 Molecular weight = 242.01amu Principal moments of inertia in cm(-1) A = 0.047634 B = 0.005762 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.679026 B = 4858.034166 C = 5435.871252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.000 4.000 3 Si 1.022 2.978 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.258 1.258 7 C -0.418 4.418 8 H 0.089 0.911 9 O -0.227 6.227 10 C 0.454 3.546 11 O -0.565 6.565 12 C -0.216 4.216 13 C -0.078 4.078 14 C -0.043 4.043 15 C -0.258 4.258 16 C 0.572 3.428 17 O -0.525 6.525 18 O -0.504 6.504 19 S 0.283 5.717 20 H 0.283 0.717 21 H 0.171 0.829 22 H 0.188 0.812 23 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 -10.998 0.007 11.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.202 4.202 3 Si 0.840 3.160 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.183 1.183 7 C -0.493 4.493 8 H 0.106 0.894 9 O -0.134 6.134 10 C 0.302 3.698 11 O -0.465 6.465 12 C -0.336 4.336 13 C -0.110 4.110 14 C -0.077 4.077 15 C -0.378 4.378 16 C 0.416 3.584 17 O -0.417 6.417 18 O -0.319 6.319 19 S 0.554 5.446 20 H 0.093 0.907 21 H 0.188 0.812 22 H 0.205 0.795 23 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges -5.146 -9.832 0.007 11.098 hybrid contribution 1.197 -0.562 -0.001 1.322 sum -3.950 -10.394 0.006 11.119 Atomic orbital electron populations 1.70031 1.07731 1.29903 1.44912 1.26642 0.96945 1.02352 0.94271 0.84503 0.77856 0.74229 0.79366 1.18666 1.18291 1.18278 1.21626 0.92558 0.80510 1.54648 0.89377 1.83904 1.39846 1.13977 1.75719 1.20201 0.85639 0.85039 0.78932 1.90639 1.15521 1.87899 1.52409 1.24225 0.99619 0.94924 1.14817 1.20692 1.03010 0.88181 0.99162 1.20644 0.89151 1.01558 0.96326 1.24085 0.96678 0.97699 1.19327 1.19129 0.82166 0.85513 0.71596 1.90915 1.85056 1.17983 1.47775 1.84574 1.16001 1.46205 1.85109 1.84797 0.99602 0.96174 1.63979 0.90691 0.81189 0.79458 0.69573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.63 13.67 21.64 0.30 -50.33 14 2 C 0.00 0.00 5.50 84.92 0.47 0.47 14 3 Si 1.02 41.75 29.55 68.60 2.03 43.78 14 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 14 5 H -0.26 -9.85 7.11 99.48 0.71 -9.14 14 6 H -0.26 -9.84 7.11 99.48 0.71 -9.14 14 7 C -0.42 -24.79 9.65 67.97 0.66 -24.13 14 8 H 0.09 5.29 6.86 -2.91 -0.02 5.27 14 9 O -0.23 -13.18 9.59 11.18 0.11 -13.07 14 10 C 0.45 23.33 7.88 70.10 0.55 23.89 14 11 O -0.56 -31.16 16.06 19.55 0.31 -30.85 14 12 C -0.22 -8.52 6.46 24.21 0.16 -8.36 14 13 C -0.08 -2.41 9.88 21.57 0.21 -2.20 14 14 C -0.04 -1.10 9.88 21.56 0.21 -0.89 14 15 C -0.26 -7.05 6.46 24.21 0.16 -6.89 14 16 C 0.57 13.89 8.32 70.11 0.58 14.47 14 17 O -0.53 -14.40 17.60 19.66 0.35 -14.05 14 18 O -0.50 -9.23 13.28 -57.45 -0.76 -10.00 14 19 S 0.28 9.45 22.94 -56.49 -1.30 8.16 14 20 H 0.28 14.48 8.31 -92.71 -0.77 13.71 14 21 H 0.17 4.83 8.04 -2.91 -0.02 4.81 14 22 H 0.19 3.63 8.04 -2.91 -0.02 3.61 14 23 H 0.44 3.17 9.11 -74.06 -0.67 2.49 14 Total: -1.00 -72.92 248.40 4.64 -68.29 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 0.61 Total: 1.73 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 3.00 Total: -3.65 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.30 Total: -50.33 kcal Atomic # 8 Polarization: -67.98 SS G_CDS: 0.00 Total: -67.97 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 9.45 SS G_CDS: -1.30 Total: 8.16 kcal Total: -72.92 4.64 -68.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308507514.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.158 kcal (2) G-P(sol) polarization free energy of solvation -72.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds