Wall clock time and date at job start Mon Mar 30 2020 04:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47316 * 2 1 4 4 C 1.50702 * 109.47193 * 239.99778 * 2 1 3 5 5 H 1.07997 * 119.99970 * 240.00458 * 4 2 1 6 6 C 1.37881 * 119.99532 * 60.00146 * 4 2 1 7 7 N 1.31501 * 120.00222 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99576 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47138 * 60.00067 * 8 6 4 10 10 H 1.48501 * 109.47069 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47452 * 300.00209 * 8 6 4 12 12 N 1.46905 * 109.47263 * 120.00214 * 2 1 3 13 13 C 1.46907 * 110.99834 * 274.99879 * 12 2 1 14 14 C 1.52994 * 109.47045 * 179.97438 * 13 12 2 15 15 N 1.46899 * 109.47123 * 179.97438 * 14 13 12 16 16 C 1.46950 * 111.00175 * 189.99791 * 15 14 13 17 17 C 1.53051 * 109.36695 * 183.19167 * 16 15 14 18 18 N 1.46956 * 109.36265 * 301.59619 * 17 16 15 19 19 C 1.46894 * 111.00196 * 183.18598 * 18 17 16 20 20 C 1.46963 * 110.88015 * 59.32021 * 18 17 16 21 21 C 1.46956 * 110.99902 * 313.79988 * 15 14 13 22 22 H 1.08998 * 109.47701 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46902 * 300.00247 * 1 2 3 24 24 H 1.09005 * 109.47150 * 59.99426 * 1 2 3 25 25 H 0.97002 * 120.00167 * 180.02562 * 7 6 4 26 26 H 1.00901 * 111.00258 * 151.04488 * 12 2 1 27 27 H 1.08998 * 109.46960 * 59.99434 * 13 12 2 28 28 H 1.09003 * 109.46751 * 300.00073 * 13 12 2 29 29 H 1.08998 * 109.47615 * 59.99944 * 14 13 12 30 30 H 1.09005 * 109.46977 * 299.99731 * 14 13 12 31 31 H 1.09003 * 109.48721 * 63.22201 * 16 15 14 32 32 H 1.09004 * 109.49418 * 303.15816 * 16 15 14 33 33 H 1.09000 * 109.49282 * 181.63575 * 17 16 15 34 34 H 1.08993 * 109.51041 * 61.57601 * 17 16 15 35 35 H 1.09003 * 109.47295 * 60.00312 * 19 18 17 36 36 H 1.09001 * 109.47321 * 179.97438 * 19 18 17 37 37 H 1.08996 * 109.47446 * 300.00161 * 19 18 17 38 38 H 1.09003 * 109.48613 * 60.64622 * 20 18 17 39 39 H 1.08994 * 109.49091 * 180.71076 * 20 18 17 40 40 H 1.08994 * 109.48748 * 296.77590 * 21 15 14 41 41 H 1.09004 * 109.49114 * 56.84813 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8257 -2.5203 -4.0077 10 1 1.8259 -0.4207 -5.2204 11 1 3.8063 -1.1211 -4.0082 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5951 -0.5332 3.5745 15 7 2.6585 0.3820 4.7218 16 6 3.3644 -0.2380 5.8517 17 6 3.3394 0.7140 7.0498 18 7 3.9695 1.9873 6.6736 19 6 4.0328 2.9025 7.8209 20 6 3.2635 2.6074 5.5436 21 6 3.2885 1.6553 4.3455 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.7089 1.1614 -3.4844 26 1 2.9173 -1.1206 1.0287 27 1 1.0871 0.6163 2.5525 28 1 2.7589 1.0462 2.1182 29 1 3.5904 -0.9273 3.3692 30 1 1.9183 -1.3565 3.8030 31 1 4.3976 -0.4393 5.5686 32 1 2.8718 -1.1727 6.1196 33 1 3.8875 0.2685 7.8799 34 1 2.3073 0.8939 7.3503 35 1 4.6181 2.4452 8.6186 36 1 4.5038 3.8367 7.5149 37 1 3.0240 3.1047 8.1806 38 1 2.2303 2.8086 5.8267 39 1 3.7561 3.5420 5.2758 40 1 4.3207 1.4755 4.0454 41 1 2.7403 2.1010 3.5155 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308859382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:38 Heat of formation + Delta-G solvation = 13.312409 kcal Electronic energy + Delta-G solvation = -17744.038427 eV Core-core repulsion = 15079.801622 eV Total energy + Delta-G solvation = -2664.236805 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.38395 -36.53948 -35.05414 -32.55679 -31.05056 -30.01026 -28.09868 -25.80926 -25.03890 -24.03093 -23.28349 -21.01779 -19.76096 -19.70425 -16.49411 -16.27399 -15.34457 -15.10696 -14.98828 -14.83629 -14.67479 -14.18074 -14.02510 -13.15028 -13.06254 -12.61042 -12.28649 -12.14694 -12.07379 -11.59556 -11.36066 -11.24356 -10.99993 -10.88977 -10.82906 -10.66723 -10.56917 -10.15071 -10.08350 -9.85158 -8.81872 -8.55397 -8.46145 -8.21550 -7.24926 -6.01707 -4.08348 3.31670 3.36033 3.38826 3.76911 3.93373 4.41322 4.78410 4.88148 5.00035 5.16176 5.22655 5.29271 5.37312 5.39315 5.43002 5.45499 5.53907 5.62825 5.68540 5.75522 5.83736 5.91985 5.99688 6.07935 6.43919 6.45134 6.81637 6.83704 6.91635 7.14062 7.17465 7.18246 7.27642 7.52689 7.78732 7.91410 8.28766 8.39758 8.68297 9.02109 9.57525 11.04623 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.049721 B = 0.003993 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.008185 B = 7010.523938 C = 7109.605097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.213 3.787 3 H 0.000 1.000 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.689 5.689 13 C 0.060 3.940 14 C 0.060 3.940 15 N -0.539 5.539 16 C 0.057 3.943 17 C 0.058 3.942 18 N -0.548 5.548 19 C 0.026 3.974 20 C 0.057 3.943 21 C 0.050 3.950 22 H 0.031 0.969 23 H 0.004 0.996 24 H 0.080 0.920 25 H 0.261 0.739 26 H 0.329 0.671 27 H 0.070 0.930 28 H 0.020 0.980 29 H 0.030 0.970 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.040 0.960 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 2.351 17.777 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.106 3.894 3 H 0.017 0.983 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.320 5.320 13 C -0.071 4.071 14 C -0.067 4.067 15 N -0.265 5.265 16 C -0.071 4.071 17 C -0.070 4.070 18 N -0.272 5.272 19 C -0.123 4.123 20 C -0.071 4.071 21 C -0.078 4.078 22 H 0.050 0.950 23 H 0.023 0.977 24 H 0.099 0.901 25 H 0.071 0.929 26 H 0.145 0.855 27 H 0.089 0.911 28 H 0.038 0.962 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.242 2.231 17.790 18.424 hybrid contribution 1.060 0.131 -1.072 1.513 sum 5.301 2.363 16.718 17.697 Atomic orbital electron populations 1.21709 0.97840 0.99342 0.99346 1.19084 0.92654 0.92235 0.85451 0.98251 1.21238 1.31563 1.12536 0.90507 0.92281 1.24919 0.95042 0.94995 0.99034 1.69885 1.36572 1.22853 1.23564 0.86578 0.79051 0.79804 0.82061 1.20176 1.21290 1.20341 1.60663 1.31919 1.33322 1.06119 1.22012 1.00275 0.94058 0.90709 1.22127 0.99630 0.95369 0.89610 1.62194 1.52265 1.04613 1.07400 1.22132 0.97051 0.96894 0.91053 1.22160 0.97582 0.90115 0.97177 1.62170 1.53128 1.04669 1.07283 1.22335 0.99997 0.96757 0.93178 1.22209 0.96890 0.97094 0.90937 1.22288 0.97993 0.90473 0.97096 0.94974 0.97665 0.90143 0.92866 0.85470 0.91126 0.96165 0.95207 0.89992 0.94149 0.90276 0.90544 0.93992 0.91506 0.91424 0.95651 0.93934 0.90409 0.94142 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.19 37.16 0.34 -2.82 16 2 C 0.21 5.51 2.60 -68.86 -0.18 5.33 16 3 H 0.00 0.00 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.44 8.59 -34.44 -0.30 -14.74 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.66 11.32 55.43 0.63 -25.03 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.69 -14.98 6.30 -107.95 -0.68 -15.66 16 13 C 0.06 1.10 4.75 -3.82 -0.02 1.08 16 14 C 0.06 0.93 5.54 -3.83 -0.02 0.91 16 15 N -0.54 -7.53 4.86 -234.47 -1.14 -8.67 16 16 C 0.06 0.68 5.58 -3.77 -0.02 0.66 16 17 C 0.06 0.61 5.62 -3.77 -0.02 0.59 16 18 N -0.55 -6.10 4.97 -242.76 -1.21 -7.30 16 19 C 0.03 0.22 9.60 60.06 0.58 0.80 16 20 C 0.06 0.66 5.62 -3.76 -0.02 0.64 16 21 C 0.05 0.67 4.93 -3.77 -0.02 0.65 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.00 0.10 7.45 -51.93 -0.39 -0.28 16 24 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.33 6.95 8.22 -39.29 -0.32 6.63 16 27 H 0.07 1.38 7.44 -51.93 -0.39 0.99 16 28 H 0.02 0.38 6.17 -51.93 -0.32 0.06 16 29 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 37 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.28 5.99 -51.93 -0.31 0.97 16 LS Contribution 316.47 15.07 4.77 4.77 Total: -1.00 -28.94 316.47 -9.90 -38.84 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.47 Total: 1.96 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 0.23 Total: -5.27 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -2.40 Total: -56.67 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.94 -9.90 -38.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308859382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.149 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds