Wall clock time and date at job start Mon Mar 30 2020 04:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47245 * 89.99579 * 8 6 4 10 10 H 1.48501 * 109.47356 * 209.99508 * 8 6 4 11 11 H 1.48499 * 109.47321 * 329.99647 * 8 6 4 12 12 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 13 13 C 1.46903 * 110.99807 * 84.99961 * 12 2 1 14 14 C 1.53001 * 109.46980 * 179.97438 * 13 12 2 15 15 N 1.46903 * 109.46980 * 180.02562 * 14 13 12 16 16 C 1.46954 * 111.00173 * 293.79680 * 15 14 13 17 17 C 1.53050 * 109.36755 * 176.81407 * 16 15 14 18 18 N 1.46954 * 109.36279 * 58.39923 * 17 16 15 19 19 C 1.46897 * 110.99974 * 176.81269 * 18 17 16 20 20 C 1.46951 * 110.88491 * 300.68161 * 18 17 16 21 21 C 1.46961 * 110.99915 * 169.99843 * 15 14 13 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 25 25 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 26 26 H 1.00902 * 111.00121 * 321.04559 * 12 2 1 27 27 H 1.09000 * 109.47514 * 299.99609 * 13 12 2 28 28 H 1.08999 * 109.47620 * 60.00050 * 13 12 2 29 29 H 1.08998 * 109.47159 * 299.99923 * 14 13 12 30 30 H 1.09001 * 109.47307 * 59.99948 * 14 13 12 31 31 H 1.09007 * 109.48787 * 296.78435 * 16 15 14 32 32 H 1.09001 * 109.48866 * 56.84315 * 16 15 14 33 33 H 1.09000 * 109.48629 * 298.43646 * 17 16 15 34 34 H 1.08996 * 109.50741 * 178.37796 * 17 16 15 35 35 H 1.08999 * 109.47579 * 183.79941 * 19 18 17 36 36 H 1.09003 * 109.47290 * 303.79878 * 19 18 17 37 37 H 1.08999 * 109.47415 * 63.80194 * 19 18 17 38 38 H 1.09003 * 109.49119 * 299.35743 * 20 18 17 39 39 H 1.09000 * 109.51091 * 179.29433 * 20 18 17 40 40 H 1.09005 * 109.49068 * 303.15954 * 21 15 14 41 41 H 1.09008 * 109.48863 * 63.21916 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2228 -2.3469 14 6 2.5963 -0.5326 -3.5742 15 7 2.6596 0.3827 -4.7214 16 6 1.3148 0.8196 -5.1215 17 6 1.4288 1.8306 -6.2649 18 7 2.1359 1.2112 -7.3944 19 6 2.1993 2.1264 -8.5416 20 6 3.4808 0.7743 -6.9944 21 6 3.3668 -0.2367 -5.8510 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7094 1.1615 3.4845 26 1 1.4496 -1.4979 -1.4101 27 1 1.0871 0.6165 -2.5525 28 1 2.7589 1.0464 -2.1182 29 1 3.5918 -0.9259 -3.3683 30 1 1.9203 -1.3565 -3.8031 31 1 0.7365 -0.0423 -5.4545 32 1 0.8162 1.2861 -4.2719 33 1 1.9838 2.7045 -5.9236 34 1 0.4315 2.1345 -6.5828 35 1 2.6675 1.6196 -9.3854 36 1 1.1905 2.4342 -8.8170 37 1 2.7867 3.0046 -8.2738 38 1 4.0591 1.6361 -6.6613 39 1 3.9796 0.3078 -7.8438 40 1 4.3643 -0.5404 -5.5332 41 1 2.8118 -1.1107 -6.1923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308859383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:41 Heat of formation + Delta-G solvation = 11.936372 kcal Electronic energy + Delta-G solvation = -17698.022089 eV Core-core repulsion = 15033.725614 eV Total energy + Delta-G solvation = -2664.296475 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.35875 -36.54436 -35.11538 -32.53137 -31.04319 -30.09244 -28.05120 -25.62976 -25.06189 -23.87891 -23.32075 -21.01531 -20.18813 -19.77508 -16.35604 -16.22605 -15.44329 -15.12471 -14.97794 -14.75140 -14.48887 -14.24522 -14.02189 -13.22743 -12.94524 -12.62557 -12.38944 -12.12335 -12.02468 -11.56445 -11.39063 -11.30742 -10.99686 -10.93085 -10.86632 -10.82297 -10.48980 -10.29654 -10.07946 -9.80077 -8.97101 -8.57263 -8.33065 -8.24146 -7.18593 -5.95332 -3.98421 3.35292 3.41111 3.45396 3.75018 3.90479 4.47709 4.77278 4.86218 4.98534 5.15292 5.20276 5.35528 5.36183 5.37366 5.41470 5.46422 5.54828 5.61362 5.67262 5.77724 5.81896 5.90150 5.97126 6.04866 6.41873 6.49943 6.72575 6.80185 6.81814 6.86926 7.12226 7.15199 7.19971 7.42092 7.76593 7.91998 8.31260 8.57625 8.66016 9.08852 9.66805 11.11829 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.057813 B = 0.003911 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.206016 B = 7158.217970 C = 7429.231938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.685 5.685 13 C 0.066 3.934 14 C 0.061 3.939 15 N -0.540 5.540 16 C 0.053 3.947 17 C 0.057 3.943 18 N -0.547 5.547 19 C 0.026 3.974 20 C 0.057 3.943 21 C 0.058 3.942 22 H 0.027 0.973 23 H 0.089 0.911 24 H 0.004 0.996 25 H 0.259 0.741 26 H 0.323 0.677 27 H 0.017 0.983 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.029 0.971 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.661 1.092 -19.182 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.105 3.895 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.315 5.315 13 C -0.064 4.064 14 C -0.067 4.067 15 N -0.265 5.265 16 C -0.075 4.075 17 C -0.071 4.071 18 N -0.272 5.272 19 C -0.123 4.123 20 C -0.071 4.071 21 C -0.071 4.071 22 H 0.046 0.954 23 H 0.107 0.893 24 H 0.023 0.977 25 H 0.069 0.931 26 H 0.139 0.861 27 H 0.035 0.965 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.257 1.294 -18.865 19.044 hybrid contribution -0.744 -0.250 0.634 1.009 sum 1.513 1.045 -18.231 18.324 Atomic orbital electron populations 1.22424 1.00771 0.99111 1.00432 1.19157 0.89530 0.94436 0.86406 0.94865 1.21179 1.30096 1.12425 0.89643 0.91943 1.24960 0.95363 0.95249 0.99056 1.69893 1.37386 1.23259 1.23285 0.86497 0.78433 0.80014 0.82426 1.20764 1.21452 1.19944 1.60744 1.58036 1.09136 1.03554 1.21851 0.98323 0.96175 0.90089 1.22108 1.01695 0.93084 0.89820 1.62086 1.17418 1.40732 1.06252 1.22218 0.90219 0.97926 0.97125 1.22185 0.98665 0.96018 0.90241 1.62165 1.17929 1.40107 1.07043 1.22335 1.01741 0.94633 0.93565 1.22171 0.89439 0.98268 0.97213 1.22131 0.99175 0.95477 0.90287 0.95406 0.89266 0.97716 0.93110 0.86139 0.96524 0.91090 0.90054 0.95309 0.94231 0.89679 0.93871 0.90455 0.91482 0.91450 0.95614 0.93923 0.90513 0.90170 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.94 37.16 0.33 -3.78 16 2 C 0.21 5.44 2.57 -68.86 -0.18 5.27 16 3 H 0.03 0.94 7.80 -51.93 -0.40 0.54 16 4 C -0.49 -13.92 8.84 -34.44 -0.30 -14.23 16 5 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.04 11.32 55.43 0.63 -25.42 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 12 N -0.68 -14.81 6.23 -107.95 -0.67 -15.48 16 13 C 0.07 1.21 5.42 -3.82 -0.02 1.19 16 14 C 0.06 0.93 5.22 -3.82 -0.02 0.91 16 15 N -0.54 -7.45 4.71 -234.45 -1.10 -8.55 16 16 C 0.05 0.69 5.41 -3.77 -0.02 0.67 16 17 C 0.06 0.64 5.62 -3.77 -0.02 0.62 16 18 N -0.55 -5.94 4.97 -242.77 -1.21 -7.14 16 19 C 0.03 0.22 9.60 60.06 0.58 0.79 16 20 C 0.06 0.60 5.62 -3.77 -0.02 0.58 16 21 C 0.06 0.68 5.61 -3.76 -0.02 0.66 16 22 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 23 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 24 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.32 6.61 8.47 -39.29 -0.33 6.27 16 27 H 0.02 0.31 5.79 -51.93 -0.30 0.01 16 28 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 29 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 30 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.04 0.53 8.14 -51.92 -0.42 0.10 16 32 H 0.08 1.16 6.34 -51.93 -0.33 0.83 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 37 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 41 H 0.04 0.48 8.14 -51.92 -0.42 0.05 16 LS Contribution 317.94 15.07 4.79 4.79 Total: -1.00 -29.13 317.94 -9.89 -39.02 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.52 Total: 1.96 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 0.21 Total: -5.89 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -2.36 Total: -56.59 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.13 -9.89 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308859383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.958 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds