Wall clock time and date at job start Mon Mar 30 2020 04:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47245 * 89.99579 * 8 6 4 10 10 H 1.48501 * 109.47356 * 209.99508 * 8 6 4 11 11 H 1.48499 * 109.47321 * 329.99647 * 8 6 4 12 12 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 13 13 C 1.46903 * 110.99807 * 84.99961 * 12 2 1 14 14 C 1.53001 * 109.46980 * 179.97438 * 13 12 2 15 15 N 1.46903 * 109.46980 * 180.02562 * 14 13 12 16 16 C 1.46954 * 111.00173 * 293.79680 * 15 14 13 17 17 C 1.53050 * 109.36755 * 176.81407 * 16 15 14 18 18 N 1.46954 * 109.36279 * 58.39923 * 17 16 15 19 19 C 1.46897 * 110.99974 * 176.81269 * 18 17 16 20 20 C 1.46951 * 110.88491 * 300.68161 * 18 17 16 21 21 C 1.46961 * 110.99915 * 169.99843 * 15 14 13 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 25 25 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 26 26 H 1.00902 * 111.00121 * 321.04559 * 12 2 1 27 27 H 1.09000 * 109.47514 * 299.99609 * 13 12 2 28 28 H 1.08999 * 109.47620 * 60.00050 * 13 12 2 29 29 H 1.08998 * 109.47159 * 299.99923 * 14 13 12 30 30 H 1.09001 * 109.47307 * 59.99948 * 14 13 12 31 31 H 1.09007 * 109.48787 * 296.78435 * 16 15 14 32 32 H 1.09001 * 109.48866 * 56.84315 * 16 15 14 33 33 H 1.09000 * 109.48629 * 298.43646 * 17 16 15 34 34 H 1.08996 * 109.50741 * 178.37796 * 17 16 15 35 35 H 1.08999 * 109.47579 * 183.79941 * 19 18 17 36 36 H 1.09003 * 109.47290 * 303.79878 * 19 18 17 37 37 H 1.08999 * 109.47415 * 63.80194 * 19 18 17 38 38 H 1.09003 * 109.49119 * 299.35743 * 20 18 17 39 39 H 1.09000 * 109.51091 * 179.29433 * 20 18 17 40 40 H 1.09005 * 109.49068 * 303.15954 * 21 15 14 41 41 H 1.09008 * 109.48863 * 63.21916 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2228 -2.3469 14 6 2.5963 -0.5326 -3.5742 15 7 2.6596 0.3827 -4.7214 16 6 1.3148 0.8196 -5.1215 17 6 1.4288 1.8306 -6.2649 18 7 2.1359 1.2112 -7.3944 19 6 2.1993 2.1264 -8.5416 20 6 3.4808 0.7743 -6.9944 21 6 3.3668 -0.2367 -5.8510 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7094 1.1615 3.4845 26 1 1.4496 -1.4979 -1.4101 27 1 1.0871 0.6165 -2.5525 28 1 2.7589 1.0464 -2.1182 29 1 3.5918 -0.9259 -3.3683 30 1 1.9203 -1.3565 -3.8031 31 1 0.7365 -0.0423 -5.4545 32 1 0.8162 1.2861 -4.2719 33 1 1.9838 2.7045 -5.9236 34 1 0.4315 2.1345 -6.5828 35 1 2.6675 1.6196 -9.3854 36 1 1.1905 2.4342 -8.8170 37 1 2.7867 3.0046 -8.2738 38 1 4.0591 1.6361 -6.6613 39 1 3.9796 0.3078 -7.8438 40 1 4.3643 -0.5404 -5.5332 41 1 2.8118 -1.1107 -6.1923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308859383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:40 Heat of formation + Delta-G solvation = -10.036982 kcal Electronic energy + Delta-G solvation = -17698.974925 eV Core-core repulsion = 15033.725614 eV Total energy + Delta-G solvation = -2665.249311 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33340 -38.09378 -36.44487 -34.44737 -32.01477 -31.59580 -29.38545 -27.28451 -26.83198 -24.87067 -24.29059 -22.37309 -22.13991 -20.75213 -18.35517 -17.36044 -16.76028 -16.58156 -16.03157 -15.83703 -15.74771 -15.51151 -15.33589 -14.80016 -14.55472 -13.93875 -13.48972 -13.41924 -13.17729 -13.10127 -12.86618 -12.74418 -12.60988 -12.32980 -12.25094 -12.18502 -12.02462 -11.91902 -11.68019 -11.57300 -11.01586 -10.48536 -9.45204 -9.27728 -8.96827 -8.09471 -6.20979 1.44241 1.44687 1.55794 2.44320 2.79277 2.97338 3.18898 3.73184 3.89853 4.05254 4.09025 4.14503 4.25507 4.39792 4.45905 4.49831 4.60613 4.62139 4.68515 4.71604 4.82052 4.86022 4.88623 4.96795 4.97942 4.99259 5.01241 5.11207 5.12949 5.41500 5.69033 5.80800 5.93828 5.95526 6.14004 6.15889 6.26758 6.63402 6.82295 6.94245 7.49115 8.96351 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.057813 B = 0.003911 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.206016 B = 7158.217970 C = 7429.231938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H -0.001 1.001 4 C -0.517 4.517 5 H 0.056 0.944 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.687 5.687 13 C 0.074 3.926 14 C 0.075 3.925 15 N -0.550 5.550 16 C 0.054 3.946 17 C 0.062 3.938 18 N -0.558 5.558 19 C 0.026 3.974 20 C 0.060 3.940 21 C 0.057 3.943 22 H 0.033 0.967 23 H 0.062 0.938 24 H 0.023 0.977 25 H 0.261 0.739 26 H 0.331 0.669 27 H 0.018 0.982 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.035 0.965 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 0.355 -20.326 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.108 3.892 3 H 0.017 0.983 4 C -0.556 4.556 5 H 0.074 0.926 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.317 5.317 13 C -0.056 4.056 14 C -0.053 4.053 15 N -0.276 5.276 16 C -0.074 4.074 17 C -0.067 4.067 18 N -0.283 5.283 19 C -0.122 4.122 20 C -0.068 4.068 21 C -0.070 4.070 22 H 0.052 0.948 23 H 0.081 0.919 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.545 0.554 -20.041 20.210 hybrid contribution -0.830 0.015 0.925 1.243 sum 1.715 0.569 -19.116 19.202 Atomic orbital electron populations 1.22225 0.99899 0.99291 1.00011 1.18923 0.90101 0.92609 0.87565 0.98322 1.21477 1.30478 1.12562 0.91051 0.92564 1.25756 0.95433 0.95915 1.02008 1.70022 1.38046 1.24320 1.24014 0.85476 0.77897 0.79076 0.78667 1.20359 1.20862 1.19216 1.60592 1.57893 1.09666 1.03563 1.21776 0.98068 0.95493 0.90299 1.21855 1.01461 0.92878 0.89095 1.62064 1.18128 1.40656 1.06714 1.22204 0.89662 0.98168 0.97370 1.22129 0.99487 0.95039 0.90020 1.62198 1.17992 1.40803 1.07280 1.22393 1.02491 0.94362 0.92950 1.22181 0.89461 0.97745 0.97415 1.22207 0.99195 0.95749 0.89898 0.94774 0.91923 0.95800 0.92989 0.85156 0.96433 0.93047 0.90151 0.94676 0.94443 0.90871 0.94774 0.89070 0.90170 0.90630 0.95591 0.94668 0.88434 0.89379 0.94275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.59 8.94 71.98 0.64 -6.95 16 2 C 0.22 11.27 2.57 44.17 0.11 11.39 16 3 H 0.00 -0.07 7.80 -2.39 -0.02 -0.09 16 4 C -0.52 -29.32 8.84 25.60 0.23 -29.10 16 5 H 0.06 3.19 7.81 -2.91 -0.02 3.16 16 6 C 0.01 0.39 5.30 84.65 0.45 0.83 16 7 N -0.92 -54.09 11.32 21.45 0.24 -53.85 16 8 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 N -0.69 -29.69 6.23 -495.43 -3.09 -32.78 16 13 C 0.07 2.71 5.42 86.30 0.47 3.18 16 14 C 0.08 2.23 5.22 86.30 0.45 2.68 16 15 N -0.55 -14.67 4.71 -895.67 -4.22 -18.89 16 16 C 0.05 1.36 5.41 86.31 0.47 1.82 16 17 C 0.06 1.31 5.62 86.31 0.49 1.79 16 18 N -0.56 -10.96 4.97 -921.98 -4.58 -15.54 16 19 C 0.03 0.37 9.60 127.69 1.23 1.60 16 20 C 0.06 1.14 5.62 86.31 0.49 1.62 16 21 C 0.06 1.25 5.61 86.31 0.48 1.73 16 22 H 0.03 1.58 8.13 -2.39 -0.02 1.56 16 23 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 24 H 0.02 1.03 7.45 -2.39 -0.02 1.01 16 25 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 26 H 0.33 13.34 8.47 -89.69 -0.76 12.58 16 27 H 0.02 0.65 5.79 -2.39 -0.01 0.64 16 28 H 0.05 2.09 8.06 -2.39 -0.02 2.07 16 29 H 0.08 2.40 8.03 -2.39 -0.02 2.39 16 30 H 0.04 1.00 8.12 -2.39 -0.02 0.98 16 31 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.07 1.97 6.34 -2.39 -0.02 1.96 16 33 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 1.66 8.13 -2.39 -0.02 1.64 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 37 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.04 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.76 8.07 -2.38 -0.02 1.74 16 41 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -61.51 317.94 -3.90 -65.41 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.22 Total: 18.54 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 5.50 Total: -9.38 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -11.64 Total: -121.07 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -61.51 -3.90 -65.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308859383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.373 kcal (2) G-P(sol) polarization free energy of solvation -61.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds