Wall clock time and date at job start Mon Mar 30 2020 03:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.47708 * 2 1 4 4 C 1.46891 * 111.00636 * 160.03946 * 3 2 1 5 5 C 1.50706 * 109.47303 * 287.50316 * 4 3 2 6 6 H 1.07997 * 119.99373 * 4.23064 * 5 4 3 7 7 C 1.37871 * 119.99981 * 184.23111 * 5 4 3 8 8 N 1.31511 * 120.00549 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99759 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47097 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47150 * 119.99892 * 9 7 5 12 12 H 1.48495 * 109.47111 * 239.99670 * 9 7 5 13 13 C 1.46904 * 111.00054 * 283.99650 * 3 2 1 14 14 C 1.52992 * 109.47370 * 163.80115 * 13 3 2 15 15 C 1.53004 * 109.47220 * 177.09942 * 14 13 3 16 16 C 1.52997 * 109.47016 * 179.97438 * 15 14 13 17 17 C 1.52991 * 109.47549 * 300.00110 * 16 15 14 18 18 O 1.42903 * 109.47180 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.47012 * 60.00249 * 17 16 15 20 20 C 1.53000 * 109.47062 * 299.99783 * 19 17 16 21 21 H 1.09002 * 109.46671 * 305.38053 * 1 2 3 22 22 H 1.08997 * 109.46908 * 65.37776 * 1 2 3 23 23 H 1.08999 * 109.47235 * 185.38134 * 1 2 3 24 24 H 1.09007 * 109.47226 * 239.99744 * 2 1 3 25 25 H 1.08999 * 109.47135 * 120.00041 * 2 1 3 26 26 H 1.09001 * 109.47202 * 47.50364 * 4 3 2 27 27 H 1.08996 * 109.47712 * 167.50377 * 4 3 2 28 28 H 0.96996 * 120.00443 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47038 * 43.80048 * 13 3 2 30 30 H 1.09001 * 109.46942 * 283.80696 * 13 3 2 31 31 H 1.09002 * 109.47369 * 57.09960 * 14 13 3 32 32 H 1.09002 * 109.46742 * 60.00270 * 15 14 13 33 33 H 1.08998 * 109.47374 * 300.00200 * 15 14 13 34 34 H 1.09011 * 109.46983 * 180.02562 * 16 15 14 35 35 H 1.08994 * 109.47162 * 60.00859 * 16 15 14 36 36 H 1.09002 * 109.47430 * 300.00231 * 17 16 15 37 37 H 0.96706 * 113.99695 * 180.02562 * 18 17 16 38 38 H 1.08996 * 109.47625 * 60.00074 * 19 17 16 39 39 H 1.08998 * 109.47334 * 179.97438 * 19 17 16 40 40 H 1.09002 * 109.47161 * 299.99883 * 20 19 17 41 41 H 1.08998 * 109.47007 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4105 1.4516 0.4681 5 6 3.4528 1.2045 1.9542 6 1 2.5476 0.9493 2.4850 7 6 4.6470 1.3042 2.6359 8 7 5.7494 1.6144 1.9894 9 14 4.6995 0.9972 4.4778 10 1 3.3356 0.6668 4.9636 11 1 5.6158 -0.1355 4.7650 12 1 5.1886 2.2170 5.1692 13 6 1.8826 1.9918 -1.3307 14 6 2.0113 3.5118 -1.2138 15 6 1.9407 4.1384 -2.6078 16 6 2.0687 5.6585 -2.4908 17 6 0.9271 6.2017 -1.6292 18 8 1.0464 7.6216 -1.5204 19 6 0.9977 5.5752 -0.2351 20 6 0.8696 4.0551 -0.3521 21 1 -0.3633 0.5950 0.8379 22 1 -0.3633 0.4282 -0.9342 23 1 -0.3634 -1.0231 0.0964 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 4.0028 0.6928 -0.0433 27 1 3.8198 2.4384 0.2522 28 1 6.5897 1.6842 2.4689 29 1 0.9065 1.7407 -1.7457 30 1 2.6653 1.6103 -1.9865 31 1 2.9663 3.7612 -0.7513 32 1 0.9857 3.8892 -3.0703 33 1 2.7538 3.7512 -3.2219 34 1 2.0180 6.1050 -3.4840 35 1 3.0236 5.9082 -2.0282 36 1 -0.0278 5.9521 -2.0918 37 1 0.3541 8.0346 -0.9862 38 1 1.9525 5.8248 0.2276 39 1 0.1846 5.9625 0.3789 40 1 -0.0853 3.8054 -0.8147 41 1 0.9194 3.6088 0.6410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308955474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:32 Heat of formation + Delta-G solvation = -78.099946 kcal Electronic energy + Delta-G solvation = -18355.015985 eV Core-core repulsion = 15654.522491 eV Total energy + Delta-G solvation = -2700.493493 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.04634 -37.02932 -35.14165 -32.60709 -30.83824 -30.52930 -29.30915 -26.62567 -24.14707 -22.51584 -22.35122 -21.21251 -19.74451 -19.17478 -17.13014 -16.40623 -15.47207 -14.78660 -14.47711 -14.28817 -14.16012 -13.92082 -13.30023 -13.17613 -12.48382 -12.41634 -12.05856 -11.90432 -11.85688 -11.81169 -11.26045 -11.04286 -10.90732 -10.74481 -10.65993 -10.54545 -10.38519 -10.16242 -10.03286 -9.85018 -9.51800 -9.47732 -9.12885 -8.39674 -7.17036 -5.99636 -4.00228 3.31934 3.39580 3.44189 4.26335 4.44572 4.81101 4.91671 5.07417 5.24717 5.35895 5.39619 5.51855 5.60115 5.69453 5.72045 5.76479 5.83522 5.96731 6.02329 6.08947 6.16226 6.18720 6.27165 6.33926 6.38153 6.40758 6.48606 6.57838 6.72564 6.80273 6.91520 6.94896 7.32913 7.39999 7.68998 7.86191 8.17348 8.28808 8.60570 9.08060 9.63741 11.11080 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020478 B = 0.006706 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.979581 B = 4174.475969 C = 4855.510937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.056 3.944 3 N -0.533 5.533 4 C 0.190 3.810 5 C -0.501 4.501 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.061 3.939 14 C -0.084 4.084 15 C -0.110 4.110 16 C -0.109 4.109 17 C 0.105 3.895 18 O -0.573 6.573 19 C -0.151 4.151 20 C -0.098 4.098 21 H 0.059 0.941 22 H 0.042 0.958 23 H 0.045 0.955 24 H 0.016 0.984 25 H 0.080 0.920 26 H -0.015 1.015 27 H 0.035 0.965 28 H 0.260 0.740 29 H 0.058 0.942 30 H 0.021 0.979 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.374 0.626 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.586 5.066 -7.456 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 N -0.258 5.258 4 C 0.065 3.935 5 C -0.540 4.540 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.068 4.068 14 C -0.103 4.103 15 C -0.148 4.148 16 C -0.147 4.147 17 C 0.047 3.953 18 O -0.379 6.379 19 C -0.189 4.189 20 C -0.135 4.135 21 H 0.078 0.922 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.034 0.966 25 H 0.099 0.901 26 H 0.003 0.997 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.220 0.780 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.156 5.237 -7.473 13.653 hybrid contribution 0.240 -0.540 0.795 0.990 sum -9.916 4.697 -6.679 12.845 Atomic orbital electron populations 1.21775 0.96673 1.00152 1.01332 1.21942 0.94266 0.90576 1.00452 1.62114 1.25386 1.16317 1.21952 1.19775 0.81695 0.96658 0.95336 1.21203 0.93915 1.46102 0.92781 0.91941 1.24980 0.95664 0.95628 0.98398 1.69963 0.98996 1.49204 1.35766 0.86495 0.77993 0.77712 0.85537 1.19706 1.21197 1.21092 1.22050 0.99184 0.94113 0.91413 1.21178 1.00288 0.94481 0.94309 1.21533 1.01655 0.93835 0.97820 1.21444 0.98525 0.95456 0.99261 1.21881 0.98074 0.79744 0.95650 1.86499 1.55468 1.20730 1.75186 1.22287 1.02546 0.97537 0.96547 1.21354 0.97268 0.92765 1.02135 0.92163 0.93909 0.93604 0.96623 0.90118 0.99702 0.94666 0.93071 0.92404 0.96096 0.90256 0.92299 0.91680 0.91934 0.91170 0.93246 0.77985 0.91074 0.92408 0.93156 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.95 37.16 0.37 -1.83 16 2 C 0.06 1.07 5.52 -3.83 -0.02 1.05 16 3 N -0.53 -11.13 3.69 -236.08 -0.87 -12.00 16 4 C 0.19 4.89 4.56 -4.98 -0.02 4.87 16 5 C -0.50 -13.95 8.42 -34.44 -0.29 -14.24 16 6 H 0.06 1.73 7.60 -52.49 -0.40 1.33 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 C 0.06 1.08 4.20 -3.83 -0.02 1.06 16 14 C -0.08 -1.37 2.20 -90.62 -0.20 -1.57 16 15 C -0.11 -1.49 5.20 -26.73 -0.14 -1.63 16 16 C -0.11 -1.46 5.57 -26.74 -0.15 -1.61 16 17 C 0.10 1.34 3.47 -26.74 -0.09 1.25 16 18 O -0.57 -7.29 13.32 -35.23 -0.47 -7.76 16 19 C -0.15 -2.09 5.55 -26.73 -0.15 -2.24 16 20 C -0.10 -1.50 5.07 -26.73 -0.14 -1.64 16 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.04 0.61 6.92 -51.93 -0.36 0.25 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.02 0.29 8.00 -51.93 -0.42 -0.13 16 25 H 0.08 1.70 7.01 -51.93 -0.36 1.34 16 26 H -0.01 -0.41 8.05 -51.93 -0.42 -0.83 16 27 H 0.04 0.97 6.27 -51.93 -0.33 0.64 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.06 0.92 6.62 -51.93 -0.34 0.57 16 30 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 31 H 0.08 1.55 6.48 -51.93 -0.34 1.21 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.37 3.14 9.08 45.56 0.41 3.55 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.57 7.69 -51.93 -0.40 1.17 16 LS Contribution 317.82 15.07 4.79 4.79 Total: -1.00 -30.02 317.82 -8.50 -38.53 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.73 Total: 0.88 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -0.94 Total: -15.09 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.13 Total: -38.02 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.47 Total: -7.76 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.02 -8.50 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308955474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.574 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds