Wall clock time and date at job start Mon Mar 30 2020 03:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.47708 * 2 1 4 4 C 1.46891 * 111.00636 * 160.03946 * 3 2 1 5 5 C 1.50706 * 109.47303 * 287.50316 * 4 3 2 6 6 H 1.07997 * 119.99373 * 4.23064 * 5 4 3 7 7 C 1.37871 * 119.99981 * 184.23111 * 5 4 3 8 8 N 1.31511 * 120.00549 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99759 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47097 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47150 * 119.99892 * 9 7 5 12 12 H 1.48495 * 109.47111 * 239.99670 * 9 7 5 13 13 C 1.46904 * 111.00054 * 283.99650 * 3 2 1 14 14 C 1.52992 * 109.47370 * 163.80115 * 13 3 2 15 15 C 1.53004 * 109.47220 * 177.09942 * 14 13 3 16 16 C 1.52997 * 109.47016 * 179.97438 * 15 14 13 17 17 C 1.52991 * 109.47549 * 300.00110 * 16 15 14 18 18 O 1.42903 * 109.47180 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.47012 * 60.00249 * 17 16 15 20 20 C 1.53000 * 109.47062 * 299.99783 * 19 17 16 21 21 H 1.09002 * 109.46671 * 305.38053 * 1 2 3 22 22 H 1.08997 * 109.46908 * 65.37776 * 1 2 3 23 23 H 1.08999 * 109.47235 * 185.38134 * 1 2 3 24 24 H 1.09007 * 109.47226 * 239.99744 * 2 1 3 25 25 H 1.08999 * 109.47135 * 120.00041 * 2 1 3 26 26 H 1.09001 * 109.47202 * 47.50364 * 4 3 2 27 27 H 1.08996 * 109.47712 * 167.50377 * 4 3 2 28 28 H 0.96996 * 120.00443 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47038 * 43.80048 * 13 3 2 30 30 H 1.09001 * 109.46942 * 283.80696 * 13 3 2 31 31 H 1.09002 * 109.47369 * 57.09960 * 14 13 3 32 32 H 1.09002 * 109.46742 * 60.00270 * 15 14 13 33 33 H 1.08998 * 109.47374 * 300.00200 * 15 14 13 34 34 H 1.09011 * 109.46983 * 180.02562 * 16 15 14 35 35 H 1.08994 * 109.47162 * 60.00859 * 16 15 14 36 36 H 1.09002 * 109.47430 * 300.00231 * 17 16 15 37 37 H 0.96706 * 113.99695 * 180.02562 * 18 17 16 38 38 H 1.08996 * 109.47625 * 60.00074 * 19 17 16 39 39 H 1.08998 * 109.47334 * 179.97438 * 19 17 16 40 40 H 1.09002 * 109.47161 * 299.99883 * 20 19 17 41 41 H 1.08998 * 109.47007 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4105 1.4516 0.4681 5 6 3.4528 1.2045 1.9542 6 1 2.5476 0.9493 2.4850 7 6 4.6470 1.3042 2.6359 8 7 5.7494 1.6144 1.9894 9 14 4.6995 0.9972 4.4778 10 1 3.3356 0.6668 4.9636 11 1 5.6158 -0.1355 4.7650 12 1 5.1886 2.2170 5.1692 13 6 1.8826 1.9918 -1.3307 14 6 2.0113 3.5118 -1.2138 15 6 1.9407 4.1384 -2.6078 16 6 2.0687 5.6585 -2.4908 17 6 0.9271 6.2017 -1.6292 18 8 1.0464 7.6216 -1.5204 19 6 0.9977 5.5752 -0.2351 20 6 0.8696 4.0551 -0.3521 21 1 -0.3633 0.5950 0.8379 22 1 -0.3633 0.4282 -0.9342 23 1 -0.3634 -1.0231 0.0964 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 4.0028 0.6928 -0.0433 27 1 3.8198 2.4384 0.2522 28 1 6.5897 1.6842 2.4689 29 1 0.9065 1.7407 -1.7457 30 1 2.6653 1.6103 -1.9865 31 1 2.9663 3.7612 -0.7513 32 1 0.9857 3.8892 -3.0703 33 1 2.7538 3.7512 -3.2219 34 1 2.0180 6.1050 -3.4840 35 1 3.0236 5.9082 -2.0282 36 1 -0.0278 5.9521 -2.0918 37 1 0.3541 8.0346 -0.9862 38 1 1.9525 5.8248 0.2276 39 1 0.1846 5.9625 0.3789 40 1 -0.0853 3.8054 -0.8147 41 1 0.9194 3.6088 0.6410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308955474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:31 Heat of formation + Delta-G solvation = -98.469095 kcal Electronic energy + Delta-G solvation = -18355.899257 eV Core-core repulsion = 15654.522491 eV Total energy + Delta-G solvation = -2701.376766 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26642 -38.47200 -36.36897 -34.73240 -32.15201 -31.66856 -30.93678 -28.42781 -25.65244 -24.25027 -23.64228 -22.50055 -21.10152 -20.58279 -18.55494 -18.11265 -16.91355 -16.50530 -16.04682 -15.59535 -15.56071 -15.34054 -14.68248 -14.46229 -14.24381 -13.85819 -13.58559 -13.29363 -13.16588 -13.04555 -12.84419 -12.61287 -12.52768 -12.37750 -12.12086 -11.99059 -11.87075 -11.73044 -11.42765 -11.17586 -11.09724 -10.98414 -10.60579 -10.56576 -8.92566 -8.19131 -6.28491 1.38873 1.39650 1.53083 2.39889 3.12107 3.30036 3.35015 3.80959 3.88152 4.01988 4.23029 4.29726 4.35192 4.45935 4.51361 4.56631 4.62010 4.64703 4.69294 4.78837 4.85488 5.00068 5.04457 5.11339 5.15965 5.17215 5.21277 5.24874 5.27278 5.33624 5.38302 5.49834 5.62801 5.64738 5.69898 6.11477 6.45818 6.71920 6.88574 6.93778 7.40896 8.91746 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020478 B = 0.006706 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.979581 B = 4174.475969 C = 4855.510937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.052 3.948 3 N -0.535 5.535 4 C 0.208 3.792 5 C -0.514 4.514 6 H 0.061 0.939 7 C -0.001 4.001 8 N -0.937 5.937 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.061 3.939 14 C -0.081 4.081 15 C -0.101 4.101 16 C -0.111 4.111 17 C 0.111 3.889 18 O -0.588 6.588 19 C -0.147 4.147 20 C -0.091 4.091 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.020 0.980 25 H 0.053 0.947 26 H -0.049 1.049 27 H 0.008 0.992 28 H 0.263 0.737 29 H 0.090 0.910 30 H 0.009 0.991 31 H 0.033 0.967 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.393 0.607 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.169 5.257 -7.827 16.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.076 4.076 3 N -0.259 5.259 4 C 0.082 3.918 5 C -0.553 4.553 6 H 0.079 0.921 7 C -0.198 4.198 8 N -0.578 5.578 9 Si 0.791 3.209 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.067 4.067 14 C -0.100 4.100 15 C -0.139 4.139 16 C -0.149 4.149 17 C 0.053 3.947 18 O -0.396 6.396 19 C -0.185 4.185 20 C -0.128 4.128 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.038 0.962 25 H 0.071 0.929 26 H -0.031 1.031 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.242 0.758 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.770 5.431 -7.847 15.942 hybrid contribution 1.048 -0.595 0.872 1.488 sum -11.722 4.836 -6.975 14.472 Atomic orbital electron populations 1.21664 0.93073 1.01805 1.02061 1.22023 0.97095 0.89171 0.99338 1.62087 1.21856 1.17805 1.24179 1.19382 0.84112 0.93823 0.94494 1.21490 0.93977 1.45912 0.93871 0.92096 1.25901 0.95206 0.95232 1.03491 1.70096 0.99663 1.50169 1.37839 0.85382 0.78442 0.77732 0.79363 1.18636 1.20452 1.20588 1.22172 1.00359 0.94650 0.89479 1.21119 0.98588 0.93989 0.96352 1.21453 1.03119 0.93685 0.95624 1.21455 0.97839 0.95445 1.00149 1.21805 0.98679 0.79802 0.94415 1.86462 1.56870 1.20566 1.75752 1.22242 1.01710 0.96605 0.97935 1.21249 0.97807 0.93610 1.00171 0.92835 0.91946 0.91256 0.96216 0.92866 1.03122 0.97392 0.92862 0.89192 0.97237 0.94861 0.89477 0.91820 0.90314 0.93743 0.90633 0.75760 0.94180 0.90253 0.90487 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.95 71.98 0.72 -2.94 16 2 C 0.05 1.97 5.52 86.30 0.48 2.45 16 3 N -0.54 -22.82 3.69 -900.82 -3.32 -26.15 16 4 C 0.21 11.30 4.56 85.56 0.39 11.69 16 5 C -0.51 -29.63 8.42 25.60 0.22 -29.42 16 6 H 0.06 3.46 7.60 -2.91 -0.02 3.43 16 7 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 8 N -0.94 -57.71 13.29 21.44 0.28 -57.43 16 9 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 C 0.06 2.15 4.20 86.30 0.36 2.52 16 14 C -0.08 -2.70 2.20 -10.79 -0.02 -2.72 16 15 C -0.10 -2.58 5.20 30.59 0.16 -2.42 16 16 C -0.11 -2.84 5.57 30.59 0.17 -2.67 16 17 C 0.11 2.58 3.47 30.59 0.11 2.69 16 18 O -0.59 -13.66 13.32 -148.98 -1.98 -15.64 16 19 C -0.15 -3.92 5.55 30.59 0.17 -3.75 16 20 C -0.09 -2.71 5.07 30.59 0.16 -2.55 16 21 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.06 1.54 6.92 -2.39 -0.02 1.52 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.02 0.72 8.00 -2.38 -0.02 0.70 16 25 H 0.05 2.29 7.01 -2.39 -0.02 2.27 16 26 H -0.05 -2.91 8.05 -2.39 -0.02 -2.93 16 27 H 0.01 0.47 6.27 -2.39 -0.01 0.46 16 28 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.09 2.59 6.62 -2.39 -0.02 2.58 16 30 H 0.01 0.35 8.05 -2.39 -0.02 0.33 16 31 H 0.03 1.40 6.48 -2.39 -0.02 1.38 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.39 5.54 9.08 -74.05 -0.67 4.87 16 38 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.05 1.94 7.69 -2.39 -0.02 1.92 16 Total: -1.00 -67.56 317.82 0.67 -66.90 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.31 Total: 11.83 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 3.36 Total: -26.72 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -3.04 Total: -83.57 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -1.98 Total: -15.64 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -67.56 0.67 -66.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308955474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.574 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds