Wall clock time and date at job start Mon Mar 30 2020 04:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47567 * 2 1 4 4 N 1.46895 * 109.46822 * 120.00352 * 2 1 3 5 5 C 1.46901 * 111.00193 * 84.99666 * 4 2 1 6 6 C 1.53004 * 109.47233 * 179.97438 * 5 4 2 7 7 N 1.46901 * 109.47233 * 179.97438 * 6 5 4 8 8 C 1.46905 * 110.99804 * 294.30603 * 7 6 5 9 9 C 1.53242 * 109.33747 * 172.74809 * 8 7 6 10 10 N 1.47077 * 108.52346 * 53.82724 * 9 8 7 11 11 C 1.36939 * 120.88022 * 128.83672 * 10 9 8 12 12 H 1.08004 * 119.99811 * 206.56060 * 11 10 9 13 13 C 1.38813 * 120.00059 * 26.56051 * 11 10 9 14 14 N 1.31620 * 119.99887 * 17.02424 * 13 11 10 15 15 Si 1.86796 * 119.99746 * 197.02672 * 13 11 10 16 16 H 1.48490 * 109.47490 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47019 * 120.00424 * 15 13 11 18 18 H 1.48501 * 109.47141 * 239.99694 * 15 13 11 19 19 C 1.47083 * 118.23679 * 308.81743 * 10 9 8 20 20 C 1.46890 * 111.00141 * 170.00381 * 7 6 5 21 21 H 1.09002 * 109.47174 * 59.99627 * 1 2 3 22 22 H 1.09002 * 109.47785 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47086 * 300.00455 * 1 2 3 24 24 H 1.09010 * 109.46570 * 239.99981 * 2 1 3 25 25 H 1.09003 * 109.47173 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47178 * 300.00370 * 3 2 1 27 27 H 1.08995 * 109.47125 * 59.99896 * 3 2 1 28 28 H 1.00906 * 110.99928 * 208.94953 * 4 2 1 29 29 H 1.09001 * 109.47371 * 299.99899 * 5 4 2 30 30 H 1.09004 * 109.47229 * 59.99985 * 5 4 2 31 31 H 1.08991 * 109.47114 * 300.00360 * 6 5 4 32 32 H 1.09004 * 109.46700 * 60.00059 * 6 5 4 33 33 H 1.08995 * 109.49255 * 292.70204 * 8 7 6 34 34 H 1.09000 * 109.49375 * 52.78512 * 8 7 6 35 35 H 1.09008 * 109.62634 * 294.11576 * 9 8 7 36 36 H 1.08998 * 109.62666 * 173.53950 * 9 8 7 37 37 H 0.96993 * 119.99849 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.62905 * 291.47231 * 19 10 9 39 39 H 1.09000 * 109.78715 * 170.99028 * 19 10 9 40 40 H 1.08999 * 109.49443 * 307.21540 * 20 7 6 41 41 H 1.09001 * 109.49701 * 67.29217 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0195 -0.6926 1.1994 5 6 2.0822 -2.1438 0.9806 6 6 2.5960 -2.8290 2.2485 7 7 2.6581 -4.2804 2.0299 8 6 1.3140 -4.8422 1.8404 9 6 1.4322 -6.3160 1.4375 10 7 2.2606 -7.0084 2.4362 11 6 1.8273 -8.1641 3.0293 12 1 2.1839 -8.4330 4.0127 13 6 0.9298 -8.9901 2.3666 14 7 0.7503 -8.8601 1.0692 15 14 -0.0231 -10.2861 3.3162 16 1 0.3568 -10.2279 4.7505 17 1 -1.4793 -10.0290 3.1795 18 1 0.2951 -11.6312 2.7735 19 6 3.5669 -6.4268 2.7807 20 6 3.3646 -4.9488 3.1307 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3635 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8932 -0.5139 -0.8901 25 1 3.1301 1.4423 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9562 0.8899 28 1 2.9173 -0.3308 1.4847 29 1 1.0868 -2.5188 0.7424 30 1 2.7587 -2.3577 0.1530 31 1 3.5914 -2.4541 2.4863 32 1 1.9199 -2.6152 3.0764 33 1 0.7524 -4.7636 2.7712 34 1 0.7967 -4.2908 1.0553 35 1 1.9020 -6.3908 0.4566 36 1 0.4408 -6.7679 1.4072 37 1 0.1234 -9.4375 0.6061 38 1 4.2418 -6.5124 1.9291 39 1 3.9900 -6.9515 3.6373 40 1 4.3345 -4.4747 3.2815 41 1 2.7745 -4.8687 4.0436 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308984792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:24 Heat of formation + Delta-G solvation = 4.067973 kcal Electronic energy + Delta-G solvation = -17930.409954 eV Core-core repulsion = 15265.772280 eV Total energy + Delta-G solvation = -2664.637674 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.87794 -38.23041 -36.23228 -33.74172 -32.34898 -31.66173 -29.21304 -28.12762 -26.86537 -24.76344 -24.21816 -22.24616 -21.45229 -20.81744 -18.73678 -17.22385 -16.86719 -16.51729 -16.10135 -15.79228 -15.37698 -15.30824 -15.13482 -14.75635 -14.57093 -14.19687 -13.43418 -13.20654 -13.08985 -12.96665 -12.89400 -12.66149 -12.57554 -12.44259 -12.12606 -12.04612 -11.98842 -11.84648 -11.66965 -11.51051 -11.29612 -10.60600 -9.40548 -9.28316 -8.69789 -7.88748 -5.33611 1.45561 1.47044 1.58107 2.49961 2.77966 3.26203 3.47334 3.66586 3.92716 4.07461 4.15849 4.26327 4.34123 4.36621 4.46174 4.54743 4.60430 4.63960 4.70131 4.79296 4.83135 4.91442 4.93899 4.98068 4.99205 5.07010 5.11657 5.20405 5.32025 5.35808 5.39760 5.60037 5.65498 6.04160 6.19162 6.25961 6.36430 6.53380 7.11905 7.82465 8.37027 9.18423 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.040365 B = 0.004615 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.511013 B = 6065.251864 C = 6496.869553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.074 3.926 3 C -0.146 4.146 4 N -0.688 5.688 5 C 0.072 3.928 6 C 0.065 3.935 7 N -0.542 5.542 8 C 0.052 3.948 9 C 0.187 3.813 10 N -0.616 5.616 11 C -0.265 4.265 12 H 0.068 0.932 13 C -0.052 4.052 14 N -0.936 5.936 15 Si 0.970 3.030 16 H -0.267 1.267 17 H -0.289 1.289 18 H -0.291 1.291 19 C 0.143 3.857 20 C 0.056 3.944 21 H 0.068 0.932 22 H 0.037 0.963 23 H 0.058 0.942 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.348 0.652 29 H 0.058 0.942 30 H 0.032 0.968 31 H 0.086 0.914 32 H 0.030 0.970 33 H 0.016 0.984 34 H 0.078 0.922 35 H -0.002 1.002 36 H 0.056 0.944 37 H 0.250 0.750 38 H 0.016 0.984 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.910 18.563 -0.132 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 C -0.204 4.204 4 N -0.322 5.322 5 C -0.057 4.057 6 C -0.063 4.063 7 N -0.267 5.267 8 C -0.077 4.077 9 C 0.060 3.940 10 N -0.340 5.340 11 C -0.396 4.396 12 H 0.086 0.914 13 C -0.247 4.247 14 N -0.582 5.582 15 Si 0.798 3.202 16 H -0.191 1.191 17 H -0.216 1.216 18 H -0.218 1.218 19 C 0.018 3.982 20 C -0.073 4.073 21 H 0.087 0.913 22 H 0.056 0.944 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.167 0.833 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.034 0.966 34 H 0.096 0.904 35 H 0.016 0.984 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.475 18.365 -0.341 18.534 hybrid contribution -0.330 -1.085 0.258 1.163 sum 2.144 17.281 -0.083 17.413 Atomic orbital electron populations 1.21796 0.94743 1.01121 1.02092 1.21572 0.96072 0.95211 0.90672 1.21912 1.01145 0.94303 1.03040 1.60465 1.33792 1.02810 1.35106 1.21790 1.00047 0.87706 0.96186 1.21989 1.01205 0.86565 0.96573 1.61852 1.17790 1.03611 1.43488 1.22587 0.89397 0.96791 0.98950 1.20607 0.95337 0.88316 0.89694 1.44423 1.16005 1.25572 1.47975 1.19593 1.23765 0.98312 0.97880 0.91399 1.25813 1.03008 1.00061 0.95824 1.70200 1.38338 1.41764 1.07923 0.85173 0.78120 0.78378 0.78564 1.19085 1.21596 1.21760 1.21137 0.87096 0.92240 0.97741 1.22462 0.98516 0.95324 0.91001 0.91258 0.94366 0.92307 0.94502 0.92070 0.90915 0.91741 0.83344 0.92325 0.95010 0.89529 0.95147 0.96598 0.90428 0.98409 0.92587 0.94051 0.96575 0.91971 0.88536 0.95951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.41 71.98 0.68 -1.97 16 2 C 0.07 1.37 3.22 44.91 0.14 1.52 16 3 C -0.15 -1.97 9.18 71.98 0.66 -1.31 16 4 N -0.69 -14.37 6.31 -491.57 -3.10 -17.47 16 5 C 0.07 1.85 5.41 86.30 0.47 2.32 16 6 C 0.06 1.78 5.22 86.30 0.45 2.23 16 7 N -0.54 -19.17 4.63 -895.27 -4.14 -23.32 16 8 C 0.05 2.12 5.46 86.38 0.47 2.59 16 9 C 0.19 9.54 5.42 86.35 0.47 10.01 16 10 N -0.62 -32.52 3.04 -698.12 -2.12 -34.64 16 11 C -0.27 -15.09 9.63 84.03 0.81 -14.28 16 12 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 13 C -0.05 -2.97 4.93 84.86 0.42 -2.55 16 14 N -0.94 -56.71 11.15 21.65 0.24 -56.47 16 15 Si 0.97 45.67 29.59 68.60 2.03 47.70 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 19 C 0.14 6.21 6.69 86.35 0.58 6.79 16 20 C 0.06 1.98 5.62 86.38 0.49 2.46 16 21 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.04 0.84 7.45 -2.39 -0.02 0.83 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 24 H 0.04 0.74 7.80 -2.38 -0.02 0.72 16 25 H 0.06 0.74 8.12 -2.39 -0.02 0.72 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.35 6.10 8.35 -89.69 -0.75 5.35 16 29 H 0.06 1.69 5.69 -2.39 -0.01 1.68 16 30 H 0.03 0.85 8.06 -2.39 -0.02 0.83 16 31 H 0.09 2.03 7.97 -2.39 -0.02 2.01 16 32 H 0.03 0.88 8.12 -2.39 -0.02 0.87 16 33 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 2.87 6.16 -2.39 -0.01 2.86 16 35 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 36 H 0.06 3.19 6.12 -2.39 -0.01 3.18 16 37 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 2.55 7.96 -2.39 -0.02 2.54 16 40 H 0.10 2.73 7.99 -2.39 -0.02 2.71 16 41 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -64.45 317.37 -1.24 -65.68 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.23 Total: 10.71 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 5.63 Total: 7.80 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -9.13 Total: -131.90 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -64.45 -1.24 -65.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308984792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.750 kcal (2) G-P(sol) polarization free energy of solvation -64.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds