Wall clock time and date at job start Mon Mar 30 2020 03:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47038 * 2 1 4 4 C 1.46906 * 110.99970 * 208.78315 * 3 2 1 5 5 C 1.50696 * 109.47293 * 65.85610 * 4 3 2 6 6 H 1.08006 * 120.00174 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00162 * 179.72399 * 5 4 3 8 8 N 1.31517 * 119.99902 * 180.27544 * 7 5 4 9 9 Si 1.86797 * 119.99926 * 0.27673 * 7 5 4 10 10 H 1.48504 * 109.46962 * 89.99547 * 9 7 5 11 11 H 1.48496 * 109.47368 * 209.99714 * 9 7 5 12 12 H 1.48507 * 109.47222 * 330.00030 * 9 7 5 13 13 C 1.46893 * 111.00285 * 84.82739 * 3 2 1 14 14 C 1.53007 * 110.01620 * 299.17108 * 13 3 2 15 15 C 1.54269 * 110.03460 * 177.78277 * 13 3 2 16 16 C 1.54891 * 104.19436 * 264.32449 * 15 13 3 17 17 C 1.54888 * 102.74733 * 322.05367 * 16 15 13 18 18 C 1.53876 * 110.03165 * 60.56457 * 13 3 2 19 19 C 1.53003 * 110.03062 * 238.56724 * 18 13 3 20 20 O 1.42889 * 110.03305 * 0.02562 * 18 13 3 21 21 H 1.09000 * 109.47327 * 292.70645 * 1 2 3 22 22 H 1.09001 * 109.47316 * 52.70803 * 1 2 3 23 23 H 1.09004 * 109.47095 * 172.70246 * 1 2 3 24 24 H 1.08997 * 109.47487 * 240.00114 * 2 1 3 25 25 H 1.09002 * 109.47099 * 119.99641 * 2 1 3 26 26 H 1.09005 * 109.46964 * 305.85359 * 4 3 2 27 27 H 1.09001 * 109.46804 * 185.85593 * 4 3 2 28 28 H 0.96995 * 119.99410 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46811 * 68.18227 * 14 13 3 30 30 H 1.09005 * 109.46964 * 188.17998 * 14 13 3 31 31 H 1.08993 * 109.46918 * 308.18299 * 14 13 3 32 32 H 1.08995 * 110.48601 * 23.00295 * 15 13 3 33 33 H 1.09000 * 110.48723 * 145.51348 * 15 13 3 34 34 H 1.09001 * 110.75387 * 80.37011 * 16 15 13 35 35 H 1.09001 * 110.75271 * 203.74205 * 16 15 13 36 36 H 1.09007 * 110.48408 * 156.62038 * 17 16 15 37 37 H 1.08991 * 110.49224 * 279.13121 * 17 16 15 38 38 H 1.09004 * 109.46648 * 60.00190 * 19 18 13 39 39 H 1.08997 * 109.47021 * 179.97438 * 19 18 13 40 40 H 1.08998 * 109.47568 * 300.00191 * 19 18 13 41 41 H 0.96702 * 114.00162 * 184.96959 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.3284 1.4807 -0.6604 5 6 3.1786 1.1491 -2.1228 6 1 2.2082 0.8933 -2.5219 7 6 4.2794 1.1784 -2.9525 8 7 4.1477 0.8943 -4.2299 9 14 5.9577 1.6214 -2.2624 10 1 6.6458 0.3878 -1.8041 11 1 6.7696 2.2779 -3.3184 12 1 5.7919 2.5507 -1.1160 13 6 2.0785 1.9226 1.3658 14 6 0.6814 1.9217 1.9896 15 6 2.6471 3.3565 1.3452 16 6 4.1558 3.1711 1.6431 17 6 4.1595 2.0323 2.6929 18 6 3.0392 1.0798 2.2229 19 6 2.2968 0.5059 3.4314 20 8 3.5934 0.0211 1.4396 21 1 -0.3634 0.3967 0.9480 22 1 -0.3634 0.6226 -0.8176 23 1 -0.3633 -1.0194 -0.1305 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 4.0211 0.7778 -0.1975 27 1 3.7150 2.4944 -0.5554 28 1 4.9221 0.9145 -4.8135 29 1 0.3584 0.8940 2.1559 30 1 0.7082 2.4526 2.9413 31 1 -0.0174 2.4179 1.3163 32 1 2.5049 3.8093 0.3640 33 1 2.1758 3.9649 2.1171 34 1 4.6928 2.8693 0.7439 35 1 4.5819 4.0832 2.0611 36 1 5.1209 1.5186 2.6952 37 1 3.9364 2.4265 3.6843 38 1 1.4763 -0.1243 3.0881 39 1 2.9850 -0.0892 4.0315 40 1 1.8999 1.3220 4.0353 41 1 4.1483 -0.5911 1.9421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313179797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:04 Heat of formation + Delta-G solvation = -21.063309 kcal Electronic energy + Delta-G solvation = -19926.759092 eV Core-core repulsion = 17228.738892 eV Total energy + Delta-G solvation = -2698.020199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.36975 -35.43595 -34.45163 -32.68671 -31.36285 -29.78396 -29.20288 -26.54935 -25.21607 -23.49908 -21.92118 -20.77583 -20.37387 -17.97914 -16.87438 -16.01931 -15.74394 -15.07296 -14.51417 -14.28661 -13.67679 -13.50513 -13.32181 -12.66401 -12.61228 -12.34332 -12.16502 -11.83461 -11.55478 -11.35960 -11.13782 -11.11487 -10.89250 -10.77043 -10.62982 -10.39738 -10.38722 -10.16422 -9.74345 -9.62084 -9.56100 -9.19289 -8.84884 -8.37601 -6.93608 -5.89265 -3.81378 3.37428 3.44021 3.46163 4.34780 4.55672 4.80325 4.84167 5.11082 5.15774 5.40111 5.45604 5.54456 5.58519 5.63490 5.71649 5.84043 5.91411 5.96701 6.05040 6.14328 6.17035 6.22629 6.29200 6.30671 6.35771 6.50652 6.56843 6.64838 6.72369 6.76101 7.00343 7.16509 7.30887 7.59562 7.86725 8.03423 8.25322 8.42530 8.91124 9.22284 9.75103 11.24888 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.010957 C = 0.009055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.859489 B = 2554.767286 C = 3091.611947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.051 3.949 3 N -0.503 5.503 4 C 0.147 3.853 5 C -0.497 4.497 6 H 0.075 0.925 7 C 0.063 3.937 8 N -0.909 5.909 9 Si 0.876 3.124 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.266 1.266 13 C 0.120 3.880 14 C -0.143 4.143 15 C -0.113 4.113 16 C -0.135 4.135 17 C -0.144 4.144 18 C 0.094 3.906 19 C -0.172 4.172 20 O -0.523 6.523 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.038 0.962 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.260 0.740 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.606 1.016 16.673 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.077 4.077 3 N -0.226 5.226 4 C 0.021 3.979 5 C -0.536 4.536 6 H 0.093 0.907 7 C -0.137 4.137 8 N -0.550 5.550 9 Si 0.704 3.296 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.191 1.191 13 C 0.029 3.971 14 C -0.200 4.200 15 C -0.151 4.151 16 C -0.172 4.172 17 C -0.182 4.182 18 C 0.052 3.948 19 C -0.230 4.230 20 O -0.329 6.329 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.176 1.592 15.743 16.139 hybrid contribution 1.915 -0.516 1.133 2.284 sum -1.261 1.076 16.876 16.958 Atomic orbital electron populations 1.22285 0.97903 0.99848 1.01803 1.22170 0.93012 0.90060 1.02412 1.62148 1.29396 1.19572 1.11478 1.20630 0.86495 0.96511 0.94250 1.21215 0.96299 1.44613 0.91464 0.90702 1.24875 0.98547 0.95558 0.94710 1.69915 1.30105 1.50893 1.04081 0.86873 0.85062 0.78897 0.78739 1.20645 1.21779 1.19123 1.21756 0.92499 0.93189 0.89705 1.22331 0.96454 1.01920 0.99265 1.22464 0.94685 0.95636 1.02322 1.22770 0.97380 0.97370 0.99726 1.23014 0.98731 0.97864 0.98621 1.22766 0.93109 0.87810 0.91131 1.22650 1.00978 1.01318 0.98038 1.87150 1.67918 1.40493 1.37313 0.92678 0.92629 0.94299 0.90453 0.92830 0.95520 0.95545 0.93069 0.91325 0.93364 0.91721 0.89898 0.92026 0.89675 0.92359 0.91836 0.91696 0.91583 0.93351 0.91669 0.80032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.54 37.16 0.35 -2.42 16 2 C 0.05 1.03 4.46 -3.83 -0.02 1.01 16 3 N -0.50 -10.58 4.25 -219.11 -0.93 -11.51 16 4 C 0.15 3.58 2.20 -4.97 -0.01 3.57 16 5 C -0.50 -14.54 8.69 -34.44 -0.30 -14.84 16 6 H 0.07 2.41 7.69 -52.48 -0.40 2.01 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.79 13.96 55.43 0.77 -28.02 16 9 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 12 H -0.27 -6.43 5.76 56.52 0.33 -6.10 16 13 C 0.12 2.02 0.73 -130.48 -0.09 1.92 16 14 C -0.14 -2.02 5.70 37.16 0.21 -1.81 16 15 C -0.11 -1.86 5.35 -25.07 -0.13 -1.99 16 16 C -0.14 -2.18 6.32 -24.74 -0.16 -2.34 16 17 C -0.14 -2.03 6.10 -25.02 -0.15 -2.18 16 18 C 0.09 1.40 0.72 -89.44 -0.06 1.34 16 19 C -0.17 -2.04 7.40 37.16 0.27 -1.77 16 20 O -0.52 -8.80 6.40 -35.23 -0.23 -9.03 16 21 H 0.05 0.83 4.35 -51.93 -0.23 0.60 16 22 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.08 1.84 6.60 -51.93 -0.34 1.50 16 25 H 0.05 1.00 4.68 -51.93 -0.24 0.76 16 26 H 0.03 0.68 4.74 -51.93 -0.25 0.43 16 27 H 0.03 0.66 3.55 -51.93 -0.18 0.48 16 28 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 29 H 0.07 0.93 3.77 -51.93 -0.20 0.74 16 30 H 0.05 0.57 6.97 -51.93 -0.36 0.21 16 31 H 0.06 0.96 7.92 -51.93 -0.41 0.55 16 32 H 0.08 1.55 7.34 -51.93 -0.38 1.17 16 33 H 0.06 0.85 7.73 -51.93 -0.40 0.45 16 34 H 0.08 1.67 4.99 -51.93 -0.26 1.41 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.06 0.78 7.84 -51.93 -0.41 0.37 16 38 H 0.07 0.81 6.18 -51.93 -0.32 0.49 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.70 6.91 -51.93 -0.36 0.34 16 41 H 0.35 4.53 9.03 45.56 0.41 4.94 16 LS Contribution 283.98 15.07 4.28 4.28 Total: -1.00 -31.96 283.98 -6.61 -38.57 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.65 Total: 5.82 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -0.19 Total: -17.72 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: -0.16 Total: -39.53 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.23 Total: -9.03 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.96 -6.61 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313179797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.511 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds