Wall clock time and date at job start Mon Mar 30 2020 03:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47038 * 2 1 4 4 C 1.46906 * 110.99970 * 208.78315 * 3 2 1 5 5 C 1.50696 * 109.47293 * 65.85610 * 4 3 2 6 6 H 1.08006 * 120.00174 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00162 * 179.72399 * 5 4 3 8 8 N 1.31517 * 119.99902 * 180.27544 * 7 5 4 9 9 Si 1.86797 * 119.99926 * 0.27673 * 7 5 4 10 10 H 1.48504 * 109.46962 * 89.99547 * 9 7 5 11 11 H 1.48496 * 109.47368 * 209.99714 * 9 7 5 12 12 H 1.48507 * 109.47222 * 330.00030 * 9 7 5 13 13 C 1.46893 * 111.00285 * 84.82739 * 3 2 1 14 14 C 1.53007 * 110.01620 * 299.17108 * 13 3 2 15 15 C 1.54269 * 110.03460 * 177.78277 * 13 3 2 16 16 C 1.54891 * 104.19436 * 264.32449 * 15 13 3 17 17 C 1.54888 * 102.74733 * 322.05367 * 16 15 13 18 18 C 1.53876 * 110.03165 * 60.56457 * 13 3 2 19 19 C 1.53003 * 110.03062 * 238.56724 * 18 13 3 20 20 O 1.42889 * 110.03305 * 0.02562 * 18 13 3 21 21 H 1.09000 * 109.47327 * 292.70645 * 1 2 3 22 22 H 1.09001 * 109.47316 * 52.70803 * 1 2 3 23 23 H 1.09004 * 109.47095 * 172.70246 * 1 2 3 24 24 H 1.08997 * 109.47487 * 240.00114 * 2 1 3 25 25 H 1.09002 * 109.47099 * 119.99641 * 2 1 3 26 26 H 1.09005 * 109.46964 * 305.85359 * 4 3 2 27 27 H 1.09001 * 109.46804 * 185.85593 * 4 3 2 28 28 H 0.96995 * 119.99410 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46811 * 68.18227 * 14 13 3 30 30 H 1.09005 * 109.46964 * 188.17998 * 14 13 3 31 31 H 1.08993 * 109.46918 * 308.18299 * 14 13 3 32 32 H 1.08995 * 110.48601 * 23.00295 * 15 13 3 33 33 H 1.09000 * 110.48723 * 145.51348 * 15 13 3 34 34 H 1.09001 * 110.75387 * 80.37011 * 16 15 13 35 35 H 1.09001 * 110.75271 * 203.74205 * 16 15 13 36 36 H 1.09007 * 110.48408 * 156.62038 * 17 16 15 37 37 H 1.08991 * 110.49224 * 279.13121 * 17 16 15 38 38 H 1.09004 * 109.46648 * 60.00190 * 19 18 13 39 39 H 1.08997 * 109.47021 * 179.97438 * 19 18 13 40 40 H 1.08998 * 109.47568 * 300.00191 * 19 18 13 41 41 H 0.96702 * 114.00162 * 184.96959 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.3284 1.4807 -0.6604 5 6 3.1786 1.1491 -2.1228 6 1 2.2082 0.8933 -2.5219 7 6 4.2794 1.1784 -2.9525 8 7 4.1477 0.8943 -4.2299 9 14 5.9577 1.6214 -2.2624 10 1 6.6458 0.3878 -1.8041 11 1 6.7696 2.2779 -3.3184 12 1 5.7919 2.5507 -1.1160 13 6 2.0785 1.9226 1.3658 14 6 0.6814 1.9217 1.9896 15 6 2.6471 3.3565 1.3452 16 6 4.1558 3.1711 1.6431 17 6 4.1595 2.0323 2.6929 18 6 3.0392 1.0798 2.2229 19 6 2.2968 0.5059 3.4314 20 8 3.5934 0.0211 1.4396 21 1 -0.3634 0.3967 0.9480 22 1 -0.3634 0.6226 -0.8176 23 1 -0.3633 -1.0194 -0.1305 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 4.0211 0.7778 -0.1975 27 1 3.7150 2.4944 -0.5554 28 1 4.9221 0.9145 -4.8135 29 1 0.3584 0.8940 2.1559 30 1 0.7082 2.4526 2.9413 31 1 -0.0174 2.4179 1.3163 32 1 2.5049 3.8093 0.3640 33 1 2.1758 3.9649 2.1171 34 1 4.6928 2.8693 0.7439 35 1 4.5819 4.0832 2.0611 36 1 5.1209 1.5186 2.6952 37 1 3.9364 2.4265 3.6843 38 1 1.4763 -0.1243 3.0881 39 1 2.9850 -0.0892 4.0315 40 1 1.8999 1.3220 4.0353 41 1 4.1483 -0.5911 1.9421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313179797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:02 Heat of formation + Delta-G solvation = -45.172063 kcal Electronic energy + Delta-G solvation = -19927.804526 eV Core-core repulsion = 17228.738892 eV Total energy + Delta-G solvation = -2699.065633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.65712 -36.85691 -35.81582 -34.71655 -32.89503 -31.18491 -30.51659 -28.41378 -26.30949 -24.77904 -23.74429 -22.11146 -21.95320 -19.31903 -18.84981 -17.45294 -17.12107 -16.60716 -16.08511 -15.68535 -15.39185 -14.74937 -14.52621 -14.39523 -14.14019 -13.76113 -13.58952 -13.41405 -12.91594 -12.64276 -12.60814 -12.51681 -12.29515 -12.20190 -11.93643 -11.84962 -11.74324 -11.72865 -11.55632 -11.21930 -11.14520 -10.82358 -10.67448 -10.35715 -8.53874 -8.22335 -6.19330 1.31890 1.34436 1.46062 2.37885 3.07307 3.18773 3.65012 3.71318 3.77784 4.05308 4.30765 4.39998 4.46471 4.50919 4.61049 4.64135 4.73846 4.80052 4.85265 4.91487 4.99486 5.05121 5.07499 5.13362 5.15255 5.20833 5.26346 5.31865 5.42891 5.43393 5.46590 5.49926 5.67377 5.75671 5.79756 6.18856 6.68384 6.84814 6.96650 7.08279 7.42161 8.95710 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.010957 C = 0.009055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.859489 B = 2554.767286 C = 3091.611947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 N -0.523 5.523 4 C 0.167 3.833 5 C -0.504 4.504 6 H 0.024 0.976 7 C -0.001 4.001 8 N -0.959 5.959 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.246 1.246 13 C 0.107 3.893 14 C -0.138 4.138 15 C -0.115 4.115 16 C -0.139 4.139 17 C -0.137 4.137 18 C 0.092 3.908 19 C -0.164 4.164 20 O -0.555 6.555 21 H 0.085 0.915 22 H 0.030 0.970 23 H 0.053 0.947 24 H 0.024 0.976 25 H 0.074 0.926 26 H 0.028 0.972 27 H 0.024 0.976 28 H 0.262 0.738 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 1.572 20.807 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.070 4.070 3 N -0.247 5.247 4 C 0.040 3.960 5 C -0.543 4.543 6 H 0.042 0.958 7 C -0.196 4.196 8 N -0.602 5.602 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.170 1.170 13 C 0.016 3.984 14 C -0.195 4.195 15 C -0.153 4.153 16 C -0.177 4.177 17 C -0.174 4.174 18 C 0.050 3.950 19 C -0.222 4.222 20 O -0.363 6.363 21 H 0.103 0.897 22 H 0.049 0.951 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.091 0.909 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.666 2.145 19.911 20.203 hybrid contribution 1.655 -0.700 -0.184 1.806 sum -1.011 1.445 19.727 19.806 Atomic orbital electron populations 1.22228 0.95792 1.00550 1.02432 1.22074 0.94672 0.89574 1.00653 1.62049 1.27472 1.20159 1.14981 1.20279 0.88544 0.95936 0.91232 1.21559 0.94244 1.43951 0.94505 0.95795 1.25833 1.03322 0.95549 0.94900 1.70090 1.31563 1.52699 1.05820 0.85692 0.79079 0.79271 0.78538 1.19585 1.21375 1.17025 1.22016 0.95053 0.93570 0.87728 1.22301 0.94205 1.02731 1.00251 1.22505 0.95481 0.95725 1.01557 1.22737 0.96612 0.99344 0.98969 1.23006 0.98586 0.96642 0.99213 1.22778 0.93232 0.87514 0.91502 1.22561 1.00854 1.02018 0.96740 1.87022 1.68565 1.41462 1.39275 0.89675 0.95095 0.92808 0.95723 0.90872 0.95422 0.95830 0.92935 0.90650 0.89994 0.92971 0.93364 0.88682 0.93695 0.90144 0.91577 0.88534 0.92024 0.91490 0.89737 0.77999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 9.54 71.98 0.69 -4.54 16 2 C 0.06 2.36 4.46 86.30 0.38 2.75 16 3 N -0.52 -22.29 4.25 -847.14 -3.60 -25.89 16 4 C 0.17 8.34 2.20 85.55 0.19 8.52 16 5 C -0.50 -31.15 8.69 25.60 0.22 -30.92 16 6 H 0.02 1.66 7.69 -2.91 -0.02 1.64 16 7 C 0.00 -0.06 5.47 84.65 0.46 0.40 16 8 N -0.96 -63.59 13.96 21.45 0.30 -63.29 16 9 Si 0.95 47.14 27.47 68.60 1.88 49.02 16 10 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.25 -11.36 5.76 99.48 0.57 -10.78 16 13 C 0.11 3.36 0.73 4.26 0.00 3.37 16 14 C -0.14 -3.42 5.70 71.98 0.41 -3.01 16 15 C -0.12 -3.53 5.35 31.67 0.17 -3.36 16 16 C -0.14 -4.13 6.32 31.89 0.20 -3.93 16 17 C -0.14 -3.26 6.10 31.71 0.19 -3.07 16 18 C 0.09 2.41 0.72 -10.03 -0.01 2.40 16 19 C -0.16 -3.05 7.40 71.98 0.53 -2.52 16 20 O -0.56 -17.61 6.40 -148.98 -0.95 -18.56 16 21 H 0.08 2.39 4.35 -2.39 -0.01 2.38 16 22 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 24 H 0.02 1.23 6.60 -2.39 -0.02 1.22 16 25 H 0.07 2.67 4.68 -2.39 -0.01 2.66 16 26 H 0.03 1.42 4.74 -2.38 -0.01 1.41 16 27 H 0.02 1.20 3.55 -2.39 -0.01 1.20 16 28 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 29 H 0.08 1.75 3.77 -2.39 -0.01 1.75 16 30 H 0.08 1.51 6.97 -2.38 -0.02 1.49 16 31 H 0.05 1.42 7.92 -2.39 -0.02 1.41 16 32 H 0.05 1.80 7.34 -2.39 -0.02 1.78 16 33 H 0.09 2.25 7.73 -2.39 -0.02 2.23 16 34 H 0.04 1.69 4.99 -2.39 -0.01 1.68 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 1.56 8.07 -2.38 -0.02 1.54 16 37 H 0.10 1.73 7.84 -2.39 -0.02 1.71 16 38 H 0.06 1.22 6.18 -2.39 -0.01 1.20 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.27 6.91 -2.39 -0.02 1.25 16 41 H 0.37 8.59 9.03 -74.06 -0.67 7.93 16 Total: -1.00 -74.56 283.98 1.30 -73.26 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.23 Total: 19.37 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 3.45 Total: -33.90 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -3.30 Total: -89.18 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.95 Total: -18.56 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.88 Total: 49.02 kcal Total: -74.56 1.30 -73.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313179797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.085 kcal (2) G-P(sol) polarization free energy of solvation -74.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds