Wall clock time and date at job start Mon Mar 30 2020 03:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46895 * 109.47095 * 2 1 4 4 C 1.46899 * 111.00330 * 286.48368 * 3 2 1 5 5 C 1.50690 * 109.47244 * 79.30246 * 4 3 2 6 6 H 1.08003 * 120.00400 * 1.62343 * 5 4 3 7 7 C 1.37884 * 120.00269 * 181.62294 * 5 4 3 8 8 N 1.31516 * 119.99445 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00152 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47290 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47192 * 119.99791 * 9 7 5 12 12 H 1.48509 * 109.46889 * 239.99789 * 9 7 5 13 13 C 1.46897 * 110.99757 * 162.52645 * 3 2 1 14 14 C 1.52998 * 110.01723 * 58.95617 * 13 3 2 15 15 C 1.54269 * 110.03071 * 180.39347 * 13 3 2 16 16 C 1.54892 * 104.19503 * 95.67910 * 15 13 3 17 17 C 1.54886 * 102.75217 * 37.94054 * 16 15 13 18 18 C 1.53880 * 110.03585 * 297.55992 * 13 3 2 19 19 C 1.52993 * 110.03201 * 121.38260 * 18 13 3 20 20 O 1.42897 * 110.02825 * 359.97438 * 18 13 3 21 21 H 1.08993 * 109.47080 * 191.69138 * 1 2 3 22 22 H 1.09004 * 109.46334 * 71.69270 * 1 2 3 23 23 H 1.08999 * 109.47348 * 311.70017 * 1 2 3 24 24 H 1.09005 * 109.46553 * 120.00176 * 2 1 3 25 25 H 1.08996 * 109.47122 * 239.99509 * 2 1 3 26 26 H 1.08999 * 109.47281 * 199.30460 * 4 3 2 27 27 H 1.09007 * 109.46570 * 319.30105 * 4 3 2 28 28 H 0.97004 * 119.99509 * 180.02562 * 8 7 5 29 29 H 1.08992 * 109.47620 * 59.29458 * 14 13 3 30 30 H 1.08998 * 109.47236 * 179.29912 * 14 13 3 31 31 H 1.09006 * 109.46785 * 299.29127 * 14 13 3 32 32 H 1.08998 * 110.48664 * 214.35489 * 15 13 3 33 33 H 1.08991 * 110.48840 * 336.99599 * 15 13 3 34 34 H 1.09001 * 110.74910 * 279.62514 * 16 15 13 35 35 H 1.09006 * 110.91400 * 156.33519 * 16 15 13 36 36 H 1.08991 * 110.48708 * 203.38076 * 17 16 15 37 37 H 1.09003 * 110.48442 * 80.73649 * 17 16 15 38 38 H 1.08999 * 109.47527 * 59.99806 * 19 18 13 39 39 H 1.09000 * 109.47368 * 180.02562 * 19 18 13 40 40 H 1.09002 * 109.47246 * 300.00198 * 19 18 13 41 41 H 0.96704 * 113.99835 * 180.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8284 2.0111 -1.3150 5 6 0.3935 2.4482 -1.4592 6 1 -0.3002 2.3017 -0.6445 7 6 -0.0340 3.0352 -2.6314 8 7 0.8106 3.2132 -3.6237 9 14 -1.8125 3.5778 -2.8098 10 1 -2.5524 3.2674 -1.5603 11 1 -1.8608 5.0400 -3.0641 12 1 -2.4382 2.8565 -3.9473 13 6 3.4285 1.4452 0.4118 14 6 4.2876 0.6064 -0.5365 15 6 3.9164 2.9087 0.4135 16 6 3.7482 3.3634 1.8845 17 6 4.1526 2.0986 2.6818 18 6 3.5787 0.9301 1.8540 19 6 4.5400 -0.2596 1.8882 20 8 2.3037 0.5444 2.3712 21 1 -0.3633 -1.0063 0.2082 22 1 -0.3632 0.3228 -0.9757 23 1 -0.3634 0.6836 0.7673 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 2.4830 2.8781 -1.4034 27 1 2.0697 1.2923 -2.0982 28 1 0.5100 3.6265 -4.4481 29 1 4.1841 0.9864 -1.5527 30 1 5.3320 0.6673 -0.2304 31 1 3.9589 -0.4323 -0.5016 32 1 4.9634 2.9621 0.1150 33 1 3.2991 3.5174 -0.2470 34 1 2.7124 3.6342 2.0890 35 1 4.4155 4.1943 2.1137 36 1 3.7075 2.1162 3.6765 37 1 5.2377 2.0212 2.7497 38 1 5.5160 0.0510 1.5153 39 1 4.6393 -0.6172 2.9131 40 1 4.1494 -1.0606 1.2605 41 1 2.3318 0.2108 3.2785 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313179801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:09 Heat of formation + Delta-G solvation = -36.500066 kcal Electronic energy + Delta-G solvation = -19535.659398 eV Core-core repulsion = 16836.969810 eV Total energy + Delta-G solvation = -2698.689587 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.94481 -35.88406 -34.37346 -32.40241 -30.98445 -30.06571 -28.05462 -26.47266 -25.17903 -23.90470 -22.45191 -20.39397 -20.07374 -17.67715 -16.74043 -16.02483 -15.26631 -14.90843 -14.48193 -14.13291 -13.55315 -13.49931 -13.14287 -13.07312 -12.43670 -12.16448 -11.83276 -11.71067 -11.39857 -11.24636 -11.14084 -11.00902 -10.81812 -10.76217 -10.62998 -10.31229 -10.14684 -10.10114 -9.88137 -9.82659 -9.47523 -8.93351 -8.89157 -8.23342 -6.92349 -5.89542 -3.86656 3.37457 3.44991 3.50816 4.44515 4.56004 4.86347 4.89683 5.09490 5.33234 5.44217 5.47172 5.63273 5.66240 5.70456 5.82887 5.88270 6.02720 6.06359 6.19127 6.25425 6.30461 6.33183 6.36584 6.48039 6.53180 6.60899 6.73786 6.79463 6.84633 6.96409 7.16930 7.37065 7.54980 7.58165 7.99601 8.10674 8.36513 8.51487 8.79368 9.22016 9.74735 11.20858 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030208 B = 0.008033 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.678482 B = 3484.893664 C = 3694.152922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.066 3.934 3 N -0.503 5.503 4 C 0.183 3.817 5 C -0.489 4.489 6 H 0.070 0.930 7 C 0.049 3.951 8 N -0.903 5.903 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.287 1.287 13 C 0.122 3.878 14 C -0.178 4.178 15 C -0.122 4.122 16 C -0.112 4.112 17 C -0.145 4.145 18 C 0.136 3.864 19 C -0.177 4.177 20 O -0.520 6.520 21 H 0.025 0.975 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.005 0.995 26 H 0.032 0.968 27 H -0.010 1.010 28 H 0.257 0.743 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.831 -5.004 11.263 14.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.062 4.062 3 N -0.227 5.227 4 C 0.058 3.942 5 C -0.528 4.528 6 H 0.088 0.912 7 C -0.151 4.151 8 N -0.544 5.544 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.214 1.214 13 C 0.031 3.969 14 C -0.237 4.237 15 C -0.160 4.160 16 C -0.150 4.150 17 C -0.183 4.183 18 C 0.094 3.906 19 C -0.234 4.234 20 O -0.323 6.323 21 H 0.044 0.956 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.023 0.977 26 H 0.050 0.950 27 H 0.008 0.992 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.349 -4.478 10.824 13.828 hybrid contribution -0.163 -0.321 -0.386 0.528 sum 7.186 -4.799 10.438 13.551 Atomic orbital electron populations 1.21828 0.95844 0.98158 1.03534 1.22048 0.96081 0.89674 0.98395 1.62198 1.12437 1.16508 1.31510 1.19949 0.97426 0.93824 0.83029 1.21397 0.95264 1.36873 0.99296 0.91216 1.24998 0.97390 0.96590 0.96106 1.69977 1.34368 1.45143 1.04954 0.86544 0.85463 0.78140 0.77917 1.19659 1.21273 1.21366 1.21573 0.90548 0.94062 0.90713 1.22670 0.99372 1.00616 1.01011 1.22653 1.00127 0.95738 0.97449 1.22328 1.01709 0.95854 0.95069 1.23024 0.99970 0.96552 0.98732 1.21867 0.83118 0.91747 0.93823 1.22674 1.00244 0.99249 1.01257 1.87008 1.28924 1.85263 1.31152 0.95647 0.91012 0.92595 0.90414 0.97658 0.95012 0.99197 0.93328 0.91998 0.93045 0.92624 0.92445 0.88818 0.90640 0.92602 0.91744 0.91810 0.91638 0.93177 0.91806 0.80316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.58 37.16 0.32 -2.54 16 2 C 0.07 1.36 3.96 -3.82 -0.02 1.34 16 3 N -0.50 -10.95 3.83 -219.12 -0.84 -11.79 16 4 C 0.18 4.76 3.62 -4.98 -0.02 4.74 16 5 C -0.49 -13.79 7.15 -34.44 -0.25 -14.04 16 6 H 0.07 1.98 6.13 -52.48 -0.32 1.65 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 8 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 9 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 C 0.12 2.20 0.55 -130.48 -0.07 2.12 16 14 C -0.18 -3.02 6.60 37.16 0.25 -2.77 16 15 C -0.12 -2.16 5.71 -25.07 -0.14 -2.30 16 16 C -0.11 -1.72 6.91 -24.74 -0.17 -1.89 16 17 C -0.14 -1.90 6.09 -25.07 -0.15 -2.06 16 18 C 0.14 1.99 0.93 -89.50 -0.08 1.91 16 19 C -0.18 -2.15 7.49 37.15 0.28 -1.87 16 20 O -0.52 -8.04 9.20 -35.23 -0.32 -8.37 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.07 1.70 6.18 -51.93 -0.32 1.38 16 23 H 0.05 1.21 7.80 -51.93 -0.41 0.81 16 24 H 0.08 1.46 4.94 -51.93 -0.26 1.20 16 25 H 0.01 0.12 6.99 -51.93 -0.36 -0.25 16 26 H 0.03 0.87 5.31 -51.93 -0.28 0.60 16 27 H -0.01 -0.28 7.27 -51.93 -0.38 -0.66 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.06 1.19 7.11 -51.93 -0.37 0.82 16 30 H 0.05 0.74 6.68 -51.93 -0.35 0.39 16 31 H 0.05 0.93 5.53 -51.93 -0.29 0.64 16 32 H 0.06 0.90 7.85 -51.93 -0.41 0.50 16 33 H 0.09 1.97 5.52 -51.93 -0.29 1.68 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 37 H 0.06 0.74 7.84 -51.93 -0.41 0.33 16 38 H 0.06 0.75 6.70 -51.93 -0.35 0.41 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 41 H 0.35 3.88 9.06 45.56 0.41 4.30 16 LS Contribution 296.65 15.07 4.47 4.47 Total: -1.00 -30.61 296.65 -7.08 -37.69 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.95 Total: 3.33 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -0.16 Total: -16.05 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.10 Total: -38.20 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.32 Total: -8.37 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.61 -7.08 -37.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313179801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.192 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds