Wall clock time and date at job start Mon Mar 30 2020 03:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46895 * 109.47095 * 2 1 4 4 C 1.46899 * 111.00330 * 286.48368 * 3 2 1 5 5 C 1.50690 * 109.47244 * 79.30246 * 4 3 2 6 6 H 1.08003 * 120.00400 * 1.62343 * 5 4 3 7 7 C 1.37884 * 120.00269 * 181.62294 * 5 4 3 8 8 N 1.31516 * 119.99445 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00152 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47290 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47192 * 119.99791 * 9 7 5 12 12 H 1.48509 * 109.46889 * 239.99789 * 9 7 5 13 13 C 1.46897 * 110.99757 * 162.52645 * 3 2 1 14 14 C 1.52998 * 110.01723 * 58.95617 * 13 3 2 15 15 C 1.54269 * 110.03071 * 180.39347 * 13 3 2 16 16 C 1.54892 * 104.19503 * 95.67910 * 15 13 3 17 17 C 1.54886 * 102.75217 * 37.94054 * 16 15 13 18 18 C 1.53880 * 110.03585 * 297.55992 * 13 3 2 19 19 C 1.52993 * 110.03201 * 121.38260 * 18 13 3 20 20 O 1.42897 * 110.02825 * 359.97438 * 18 13 3 21 21 H 1.08993 * 109.47080 * 191.69138 * 1 2 3 22 22 H 1.09004 * 109.46334 * 71.69270 * 1 2 3 23 23 H 1.08999 * 109.47348 * 311.70017 * 1 2 3 24 24 H 1.09005 * 109.46553 * 120.00176 * 2 1 3 25 25 H 1.08996 * 109.47122 * 239.99509 * 2 1 3 26 26 H 1.08999 * 109.47281 * 199.30460 * 4 3 2 27 27 H 1.09007 * 109.46570 * 319.30105 * 4 3 2 28 28 H 0.97004 * 119.99509 * 180.02562 * 8 7 5 29 29 H 1.08992 * 109.47620 * 59.29458 * 14 13 3 30 30 H 1.08998 * 109.47236 * 179.29912 * 14 13 3 31 31 H 1.09006 * 109.46785 * 299.29127 * 14 13 3 32 32 H 1.08998 * 110.48664 * 214.35489 * 15 13 3 33 33 H 1.08991 * 110.48840 * 336.99599 * 15 13 3 34 34 H 1.09001 * 110.74910 * 279.62514 * 16 15 13 35 35 H 1.09006 * 110.91400 * 156.33519 * 16 15 13 36 36 H 1.08991 * 110.48708 * 203.38076 * 17 16 15 37 37 H 1.09003 * 110.48442 * 80.73649 * 17 16 15 38 38 H 1.08999 * 109.47527 * 59.99806 * 19 18 13 39 39 H 1.09000 * 109.47368 * 180.02562 * 19 18 13 40 40 H 1.09002 * 109.47246 * 300.00198 * 19 18 13 41 41 H 0.96704 * 113.99835 * 180.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8284 2.0111 -1.3150 5 6 0.3935 2.4482 -1.4592 6 1 -0.3002 2.3017 -0.6445 7 6 -0.0340 3.0352 -2.6314 8 7 0.8106 3.2132 -3.6237 9 14 -1.8125 3.5778 -2.8098 10 1 -2.5524 3.2674 -1.5603 11 1 -1.8608 5.0400 -3.0641 12 1 -2.4382 2.8565 -3.9473 13 6 3.4285 1.4452 0.4118 14 6 4.2876 0.6064 -0.5365 15 6 3.9164 2.9087 0.4135 16 6 3.7482 3.3634 1.8845 17 6 4.1526 2.0986 2.6818 18 6 3.5787 0.9301 1.8540 19 6 4.5400 -0.2596 1.8882 20 8 2.3037 0.5444 2.3712 21 1 -0.3633 -1.0063 0.2082 22 1 -0.3632 0.3228 -0.9757 23 1 -0.3634 0.6836 0.7673 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 2.4830 2.8781 -1.4034 27 1 2.0697 1.2923 -2.0982 28 1 0.5100 3.6265 -4.4481 29 1 4.1841 0.9864 -1.5527 30 1 5.3320 0.6673 -0.2304 31 1 3.9589 -0.4323 -0.5016 32 1 4.9634 2.9621 0.1150 33 1 3.2991 3.5174 -0.2470 34 1 2.7124 3.6342 2.0890 35 1 4.4155 4.1943 2.1137 36 1 3.7075 2.1162 3.6765 37 1 5.2377 2.0212 2.7497 38 1 5.5160 0.0510 1.5153 39 1 4.6393 -0.6172 2.9131 40 1 4.1494 -1.0606 1.2605 41 1 2.3318 0.2108 3.2785 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313179801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:06 Heat of formation + Delta-G solvation = -58.192911 kcal Electronic energy + Delta-G solvation = -19536.600070 eV Core-core repulsion = 16836.969810 eV Total energy + Delta-G solvation = -2699.630260 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.28917 -37.41803 -35.71559 -34.51745 -32.29849 -31.48936 -29.77566 -28.31539 -26.40246 -25.34344 -24.29183 -21.99300 -21.44621 -19.12502 -18.63051 -17.51959 -16.75030 -16.44929 -16.11199 -15.72865 -15.00965 -14.89710 -14.70170 -14.33815 -14.14073 -13.77135 -13.35651 -13.23948 -12.92164 -12.75559 -12.70602 -12.64114 -12.49090 -12.26652 -12.12386 -11.90339 -11.65855 -11.60105 -11.52258 -11.30731 -11.00329 -10.83627 -10.49610 -10.26479 -8.71776 -8.11104 -6.16748 1.38592 1.39197 1.52949 2.43145 3.18631 3.22443 3.57340 3.66725 3.88103 4.10352 4.31018 4.41946 4.48136 4.52103 4.55605 4.59903 4.65800 4.78580 4.91670 4.93560 4.98902 5.02360 5.04734 5.11876 5.17251 5.19330 5.23727 5.35030 5.42049 5.44357 5.48984 5.54187 5.58538 5.75836 5.80088 6.24709 6.64568 6.87693 7.00417 7.25741 7.49813 8.98403 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030208 B = 0.008033 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.678482 B = 3484.893664 C = 3694.152922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.069 3.931 3 N -0.508 5.508 4 C 0.203 3.797 5 C -0.498 4.498 6 H 0.065 0.935 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.282 1.282 13 C 0.106 3.894 14 C -0.170 4.170 15 C -0.126 4.126 16 C -0.110 4.110 17 C -0.134 4.134 18 C 0.139 3.861 19 C -0.171 4.171 20 O -0.546 6.546 21 H 0.056 0.944 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.107 0.893 25 H -0.012 1.012 26 H 0.012 0.988 27 H -0.048 1.048 28 H 0.259 0.741 29 H 0.025 0.975 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.503 -5.824 13.806 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 N -0.231 5.231 4 C 0.076 3.924 5 C -0.537 4.537 6 H 0.083 0.917 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.208 1.208 13 C 0.015 3.985 14 C -0.228 4.228 15 C -0.164 4.164 16 C -0.147 4.147 17 C -0.171 4.171 18 C 0.098 3.902 19 C -0.228 4.228 20 O -0.352 6.352 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.124 0.876 25 H 0.006 0.994 26 H 0.030 0.970 27 H -0.031 1.031 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.027 -5.310 13.400 16.498 hybrid contribution -0.336 -0.076 -1.152 1.202 sum 7.692 -5.387 12.248 15.433 Atomic orbital electron populations 1.21717 0.96171 0.99634 1.01072 1.22107 0.95810 0.89097 0.98819 1.62132 1.15707 1.17050 1.28245 1.19558 0.96035 0.92355 0.84418 1.21666 0.96204 1.36577 0.99225 0.91673 1.25853 1.01789 0.96727 0.95807 1.70108 1.36449 1.46079 1.05503 0.85488 0.80206 0.77801 0.78103 1.18885 1.20609 1.20754 1.21898 0.88264 0.94776 0.93513 1.22595 1.01286 1.00179 0.98779 1.22635 1.00198 0.95103 0.98429 1.22290 1.00717 0.98095 0.93644 1.22993 1.01597 0.93823 0.98710 1.21795 0.83622 0.93526 0.91269 1.22601 0.99637 0.97537 1.03047 1.86892 1.29630 1.85533 1.33164 0.92486 0.94472 0.93536 0.87571 0.99406 0.97025 1.03067 0.93195 0.95629 0.89747 0.92412 0.90567 0.93437 0.93410 0.90407 0.89858 0.89167 0.90605 0.90229 0.92884 0.77681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.58 71.98 0.62 -4.78 16 2 C 0.07 2.86 3.96 86.31 0.34 3.20 16 3 N -0.51 -22.68 3.83 -847.15 -3.25 -25.93 16 4 C 0.20 11.18 3.62 85.55 0.31 11.49 16 5 C -0.50 -29.25 7.15 25.60 0.18 -29.07 16 6 H 0.07 3.81 6.13 -2.91 -0.02 3.79 16 7 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 8 N -0.94 -58.67 13.29 21.45 0.28 -58.39 16 9 Si 0.96 46.50 29.54 68.60 2.03 48.52 16 10 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 C 0.11 3.77 0.55 4.25 0.00 3.77 16 14 C -0.17 -5.72 6.60 71.98 0.47 -5.25 16 15 C -0.13 -4.47 5.71 31.67 0.18 -4.29 16 16 C -0.11 -3.20 6.91 31.89 0.22 -2.98 16 17 C -0.13 -2.98 6.09 31.67 0.19 -2.79 16 18 C 0.14 3.66 0.93 -10.07 -0.01 3.65 16 19 C -0.17 -3.43 7.49 71.98 0.54 -2.89 16 20 O -0.55 -15.29 9.20 -148.98 -1.37 -16.66 16 21 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.04 1.79 6.18 -2.38 -0.01 1.78 16 23 H 0.05 2.01 7.80 -2.39 -0.02 1.99 16 24 H 0.11 3.81 4.94 -2.38 -0.01 3.80 16 25 H -0.01 -0.55 6.99 -2.39 -0.02 -0.56 16 26 H 0.01 0.70 5.31 -2.39 -0.01 0.69 16 27 H -0.05 -2.97 7.27 -2.38 -0.02 -2.99 16 28 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 29 H 0.02 1.01 7.11 -2.39 -0.02 1.00 16 30 H 0.08 2.24 6.68 -2.39 -0.02 2.22 16 31 H 0.06 1.89 5.53 -2.38 -0.01 1.88 16 32 H 0.08 2.35 7.85 -2.39 -0.02 2.33 16 33 H 0.05 2.12 5.52 -2.39 -0.01 2.11 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.08 1.60 8.06 -2.39 -0.02 1.58 16 37 H 0.09 1.60 7.84 -2.39 -0.02 1.58 16 38 H 0.08 1.38 6.70 -2.39 -0.02 1.36 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.19 6.58 -2.39 -0.02 1.18 16 41 H 0.37 6.76 9.06 -74.05 -0.67 6.08 16 Total: -1.00 -69.74 296.65 1.55 -68.18 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.34 Total: 14.05 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 3.52 Total: -29.78 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -2.96 Total: -84.31 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -1.37 Total: -16.66 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -69.74 1.55 -68.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313179801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.992 kcal (2) G-P(sol) polarization free energy of solvation -69.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds