Wall clock time and date at job start Mon Mar 30 2020 03:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47053 * 2 1 4 4 C 1.46892 * 111.00592 * 74.03273 * 3 2 1 5 5 C 1.50710 * 109.46864 * 287.55341 * 4 3 2 6 6 H 1.08001 * 119.99908 * 355.78428 * 5 4 3 7 7 C 1.37876 * 119.99669 * 175.78804 * 5 4 3 8 8 N 1.31515 * 120.00315 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99727 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46597 * 90.00463 * 9 7 5 11 11 H 1.48497 * 109.47191 * 210.00095 * 9 7 5 12 12 H 1.48499 * 109.47301 * 330.00772 * 9 7 5 13 13 C 1.46905 * 110.99837 * 197.99196 * 3 2 1 14 14 C 1.53008 * 110.01249 * 315.75202 * 13 3 2 15 15 C 1.54269 * 110.02930 * 194.31427 * 13 3 2 16 16 C 1.54890 * 104.19193 * 217.09934 * 15 13 3 17 17 C 1.54885 * 102.75046 * 37.94579 * 16 15 13 18 18 C 1.53870 * 110.03475 * 77.14394 * 13 3 2 19 19 C 1.52995 * 110.03728 * 0.02562 * 18 13 3 20 20 O 1.42898 * 110.02956 * 238.61514 * 18 13 3 21 21 H 1.08997 * 109.47014 * 171.64821 * 1 2 3 22 22 H 1.09004 * 109.47066 * 291.64628 * 1 2 3 23 23 H 1.08995 * 109.47644 * 51.64527 * 1 2 3 24 24 H 1.09003 * 109.47085 * 239.99786 * 2 1 3 25 25 H 1.09001 * 109.47511 * 119.99734 * 2 1 3 26 26 H 1.09001 * 109.47027 * 47.54923 * 4 3 2 27 27 H 1.08999 * 109.47435 * 167.55583 * 4 3 2 28 28 H 0.97000 * 120.00152 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.46750 * 181.39435 * 14 13 3 30 30 H 1.09002 * 109.46872 * 301.39727 * 14 13 3 31 31 H 1.08994 * 109.46792 * 61.39594 * 14 13 3 32 32 H 1.08991 * 110.48608 * 335.78130 * 15 13 3 33 33 H 1.09008 * 110.48704 * 98.29197 * 15 13 3 34 34 H 1.09004 * 110.75209 * 156.26291 * 16 15 13 35 35 H 1.09000 * 110.75662 * 279.62519 * 16 15 13 36 36 H 1.08995 * 110.48531 * 203.37968 * 17 16 15 37 37 H 1.09001 * 110.48574 * 80.73232 * 17 16 15 38 38 H 1.09006 * 109.47125 * 47.16690 * 19 18 13 39 39 H 1.08994 * 109.47344 * 167.16834 * 19 18 13 40 40 H 1.09003 * 109.47016 * 287.17020 * 19 18 13 41 41 H 0.96710 * 113.99566 * 180.69381 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8395 2.0072 1.3184 5 6 0.3767 2.2910 1.5442 6 1 -0.3385 2.0979 0.7583 7 6 -0.0485 2.7972 2.7542 8 7 0.8225 3.0328 3.7110 9 14 -1.8615 3.1496 3.0339 10 1 -2.5206 1.9407 3.5901 11 1 -2.0049 4.2761 3.9908 12 1 -2.5002 3.5121 1.7432 13 6 3.4249 1.4465 -0.4236 14 6 4.2284 0.3417 0.2655 15 6 4.0205 2.8274 -0.0797 16 6 4.9601 3.1428 -1.2700 17 6 4.1733 2.5877 -2.4831 18 6 3.5220 1.2941 -1.9517 19 6 2.1246 1.1267 -2.5516 20 8 4.3343 0.1653 -2.2803 21 1 -0.3633 -1.0167 -0.1493 22 1 -0.3633 0.3791 0.9552 23 1 -0.3634 0.6376 -0.8058 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.2019 1.3304 2.0921 27 1 2.4012 2.9404 1.3596 28 1 0.5233 3.3886 4.5624 29 1 5.2737 0.4109 -0.0358 30 1 4.1533 0.4583 1.3467 31 1 3.8306 -0.6310 -0.0236 32 1 3.2315 3.5759 -0.0078 33 1 4.5847 2.7784 0.8517 34 1 5.1125 4.2178 -1.3674 35 1 5.9128 2.6253 -1.1577 36 1 4.8509 2.3631 -3.3068 37 1 3.4090 3.2976 -2.7993 38 1 1.4571 1.8803 -2.1336 39 1 2.1768 1.2476 -3.6336 40 1 1.7442 0.1330 -2.3150 41 1 4.4428 0.0221 -3.2305 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313179807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:23 Heat of formation + Delta-G solvation = -57.147149 kcal Electronic energy + Delta-G solvation = -19505.759834 eV Core-core repulsion = 16806.174922 eV Total energy + Delta-G solvation = -2699.584912 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.34692 -37.69052 -35.59928 -34.55691 -32.20944 -31.17775 -30.30748 -28.06908 -27.07126 -24.89951 -24.31213 -22.09346 -21.61160 -19.26007 -18.50792 -17.17187 -16.90862 -16.63516 -16.44989 -15.77832 -15.37930 -14.55893 -14.34103 -14.18533 -13.90935 -13.78998 -13.69920 -13.31126 -13.01767 -12.87583 -12.66742 -12.59332 -12.47860 -12.24798 -12.20089 -11.92605 -11.76563 -11.58242 -11.54076 -11.30802 -11.01143 -10.87529 -10.56198 -10.42101 -8.86466 -8.11796 -6.16319 1.41944 1.42401 1.53499 2.43420 3.13177 3.20215 3.53835 3.62545 3.93380 4.04998 4.32807 4.35476 4.37465 4.41559 4.55905 4.64055 4.72533 4.77400 4.87648 4.92526 4.94795 5.01411 5.05903 5.08173 5.16669 5.19808 5.25078 5.32536 5.38034 5.42468 5.46044 5.55365 5.65173 5.78386 5.79869 6.19862 6.47165 6.78940 6.97793 7.09806 7.49084 8.98917 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030568 B = 0.007987 C = 0.007335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.778492 B = 3504.817433 C = 3816.190674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 N -0.516 5.516 4 C 0.202 3.798 5 C -0.506 4.506 6 H 0.080 0.920 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.262 1.262 13 C 0.106 3.894 14 C -0.142 4.142 15 C -0.118 4.118 16 C -0.113 4.113 17 C -0.136 4.136 18 C 0.144 3.856 19 C -0.162 4.162 20 O -0.567 6.567 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.083 0.917 25 H -0.001 1.001 26 H -0.048 1.048 27 H 0.018 0.982 28 H 0.259 0.741 29 H 0.066 0.934 30 H 0.019 0.981 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.724 -3.334 -13.939 15.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.063 4.063 3 N -0.239 5.239 4 C 0.076 3.924 5 C -0.544 4.544 6 H 0.098 0.902 7 C -0.200 4.200 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.186 1.186 13 C 0.016 3.984 14 C -0.201 4.201 15 C -0.156 4.156 16 C -0.150 4.150 17 C -0.174 4.174 18 C 0.103 3.897 19 C -0.219 4.219 20 O -0.375 6.375 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.101 0.899 25 H 0.017 0.983 26 H -0.031 1.031 27 H 0.036 0.964 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.470 -3.055 -13.465 14.851 hybrid contribution -0.375 -0.142 1.132 1.201 sum 5.095 -3.198 -12.333 13.722 Atomic orbital electron populations 1.22036 0.95115 1.00221 1.02969 1.22066 0.96403 0.89213 0.98573 1.62458 1.15930 1.16825 1.28719 1.19552 0.96325 0.92812 0.83685 1.21766 0.93890 1.40005 0.98754 0.90232 1.25852 1.01891 0.96145 0.96141 1.70109 1.35757 1.46920 1.05281 0.85542 0.80280 0.77598 0.78203 1.20285 1.21358 1.18599 1.21740 0.87959 0.94739 0.93977 1.22015 1.01086 0.99367 0.97609 1.22533 0.98518 0.96044 0.98459 1.22403 0.97706 1.01229 0.93702 1.22977 0.99683 0.96701 0.98036 1.21553 0.90174 0.85662 0.92294 1.22455 0.96738 1.03019 0.99695 1.86554 1.72099 1.48793 1.30028 0.92452 0.92299 0.92591 0.89922 0.98282 1.03051 0.96411 0.93215 0.91517 0.96226 0.92496 0.92146 0.93498 0.90439 0.90979 0.88856 0.90710 0.91544 0.91645 0.92304 0.76363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 8.58 71.98 0.62 -5.00 16 2 C 0.07 2.58 3.29 86.30 0.28 2.86 16 3 N -0.52 -21.81 2.73 -847.12 -2.32 -24.12 16 4 C 0.20 10.71 4.08 85.56 0.35 11.06 16 5 C -0.51 -28.01 7.02 25.60 0.18 -27.84 16 6 H 0.08 4.24 5.58 -2.91 -0.02 4.22 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 8 N -0.94 -57.23 13.29 21.45 0.28 -56.94 16 9 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 13 C 0.11 3.84 0.56 4.25 0.00 3.85 16 14 C -0.14 -5.22 6.52 71.98 0.47 -4.75 16 15 C -0.12 -4.26 4.45 31.67 0.14 -4.12 16 16 C -0.11 -3.00 6.91 31.88 0.22 -2.78 16 17 C -0.14 -3.22 6.08 31.67 0.19 -3.03 16 18 C 0.14 4.03 1.09 -10.07 -0.01 4.02 16 19 C -0.16 -4.45 7.45 71.98 0.54 -3.92 16 20 O -0.57 -14.04 11.13 -148.98 -1.66 -15.70 16 21 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 22 H 0.06 2.67 5.35 -2.38 -0.01 2.66 16 23 H 0.06 2.08 7.96 -2.39 -0.02 2.06 16 24 H 0.08 2.88 4.90 -2.39 -0.01 2.87 16 25 H 0.00 -0.05 7.17 -2.39 -0.02 -0.07 16 26 H -0.05 -2.90 7.39 -2.39 -0.02 -2.92 16 27 H 0.02 1.01 5.34 -2.39 -0.01 1.00 16 28 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.07 2.22 7.87 -2.39 -0.02 2.20 16 30 H 0.02 0.79 7.53 -2.39 -0.02 0.77 16 31 H 0.06 2.06 6.33 -2.39 -0.02 2.04 16 32 H 0.06 2.49 6.66 -2.39 -0.02 2.48 16 33 H 0.05 1.81 7.84 -2.38 -0.02 1.79 16 34 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.09 1.67 8.06 -2.39 -0.02 1.65 16 37 H 0.07 1.79 7.85 -2.39 -0.02 1.77 16 38 H 0.07 2.21 7.17 -2.38 -0.02 2.19 16 39 H 0.06 1.39 8.12 -2.39 -0.02 1.38 16 40 H 0.06 1.68 5.44 -2.39 -0.01 1.67 16 41 H 0.39 5.92 9.06 -74.05 -0.67 5.25 16 Total: -1.00 -64.34 297.88 2.12 -62.21 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.34 Total: 17.35 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 3.44 Total: -29.38 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -2.03 Total: -81.07 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -1.66 Total: -15.70 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -64.34 2.12 -62.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313179807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.066 kcal (2) G-P(sol) polarization free energy of solvation -64.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds