Wall clock time and date at job start Mon Mar 30 2020 03:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46904 * 111.00148 * 2 1 4 4 C 1.50691 * 109.47210 * 66.04358 * 3 2 1 5 5 H 1.08005 * 120.00343 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00016 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99773 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99844 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47425 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46837 * 120.00115 * 8 6 4 11 11 H 1.48501 * 109.46997 * 240.00100 * 8 6 4 12 12 C 1.46899 * 111.00205 * 236.04674 * 2 1 3 13 13 C 1.52999 * 109.47302 * 199.46856 * 12 2 1 14 14 H 1.09001 * 109.47168 * 305.83135 * 13 12 2 15 15 O 1.42899 * 109.47321 * 65.83424 * 13 12 2 16 16 C 1.53006 * 109.47074 * 185.83433 * 13 12 2 17 17 C 1.52996 * 109.46908 * 299.99656 * 16 13 12 18 18 C 1.53001 * 109.47162 * 179.97438 * 17 16 13 19 19 C 1.53009 * 109.46844 * 60.00249 * 18 17 16 20 20 C 1.53004 * 109.46951 * 300.00053 * 19 18 17 21 21 C 1.52997 * 109.46933 * 60.00031 * 20 19 18 22 22 H 1.09000 * 109.47078 * 178.19777 * 1 2 3 23 23 H 1.08998 * 109.47194 * 298.19822 * 1 2 3 24 24 H 1.09001 * 109.47174 * 58.19638 * 1 2 3 25 25 H 1.09001 * 109.47225 * 186.05057 * 3 2 1 26 26 H 1.09001 * 109.46644 * 306.04332 * 3 2 1 27 27 H 0.97007 * 119.99642 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47659 * 79.46222 * 12 2 1 29 29 H 1.09003 * 109.47016 * 319.46649 * 12 2 1 30 30 H 0.96698 * 114.00294 * 59.99688 * 15 13 12 31 31 H 1.08998 * 109.47086 * 59.99611 * 16 13 12 32 32 H 1.08999 * 109.47467 * 300.00364 * 17 16 13 33 33 H 1.09000 * 109.47336 * 60.00706 * 17 16 13 34 34 H 1.08999 * 109.47403 * 300.00619 * 18 17 16 35 35 H 1.08996 * 109.47498 * 179.97438 * 18 17 16 36 36 H 1.09000 * 109.47125 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.46818 * 60.00012 * 19 18 17 38 38 H 1.08998 * 109.47069 * 300.00133 * 20 19 18 39 39 H 1.08996 * 109.47103 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.46677 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47160 * 60.00158 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0488 6 6 2.0268 3.3496 1.5283 7 7 2.7111 4.0022 0.6144 8 14 1.5829 4.1869 3.1381 9 1 0.8167 3.2439 3.9918 10 1 2.8249 4.5945 3.8429 11 1 0.7550 5.3878 2.8596 12 6 1.9954 -0.7660 -1.1376 13 6 3.4479 -1.1584 -0.8597 14 1 4.0253 -0.2663 -0.6171 15 8 3.4931 -2.0690 0.2407 16 6 4.0415 -1.8283 -2.1007 17 6 3.2311 -3.0805 -2.4411 18 6 3.8242 -3.7501 -3.6824 19 6 5.2769 -4.1425 -3.4051 20 6 6.0873 -2.8902 -3.0646 21 6 5.4941 -2.2207 -1.8234 22 1 -0.3633 -1.0272 -0.0323 23 1 -0.3633 0.4856 0.9057 24 1 -0.3633 0.5416 -0.8734 25 1 3.0797 1.3444 -0.1083 26 1 1.5611 1.9273 -0.8310 27 1 2.9851 4.9186 0.7761 28 1 1.9502 -0.1550 -2.0391 29 1 1.3964 -1.6658 -1.2781 30 1 2.9993 -2.8874 0.0946 31 1 4.0069 -1.1338 -2.9400 32 1 3.2655 -3.7750 -1.6017 33 1 2.1963 -2.8010 -2.6392 34 1 3.7894 -3.0554 -4.5216 35 1 3.2472 -4.6424 -3.9247 36 1 5.6997 -4.6191 -4.2896 37 1 5.3117 -4.8372 -2.5659 38 1 6.0525 -2.1955 -3.9038 39 1 7.1223 -3.1697 -2.8675 40 1 6.0717 -1.3289 -1.5806 41 1 5.5290 -2.9154 -0.9842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354864125.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:12 Heat of formation + Delta-G solvation = -98.894724 kcal Electronic energy + Delta-G solvation = -18248.388201 eV Core-core repulsion = 15546.992979 eV Total energy + Delta-G solvation = -2701.395223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.51892 -38.23208 -36.68861 -34.62296 -32.46503 -31.64821 -29.65760 -28.95721 -26.07918 -24.81512 -23.44315 -22.26868 -21.39162 -20.47788 -18.61067 -17.53197 -16.84126 -16.41489 -16.34149 -15.72460 -15.62197 -15.07516 -14.96189 -14.69786 -14.46392 -13.99232 -13.45326 -13.28601 -13.08948 -12.96366 -12.90776 -12.59299 -12.53669 -12.34706 -12.24787 -12.02363 -11.90469 -11.62210 -11.49163 -11.32451 -11.19877 -10.80207 -10.62244 -10.42836 -8.95545 -8.21883 -6.31583 1.38925 1.40337 1.54035 2.39580 3.10146 3.19978 3.71608 3.74005 3.81311 3.90128 4.15059 4.26270 4.35120 4.46347 4.47518 4.58547 4.61834 4.64873 4.67945 4.71903 4.76491 4.82134 5.00346 5.05113 5.09511 5.16526 5.20985 5.27086 5.28998 5.32024 5.37250 5.41870 5.50153 5.62798 5.64572 6.05519 6.33969 6.64436 6.84757 7.03306 7.38115 8.89731 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038018 B = 0.005115 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.314937 B = 5473.253896 C = 5799.174611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.545 5.545 3 C 0.209 3.791 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.276 1.276 12 C 0.027 3.973 13 C 0.126 3.874 14 H 0.056 0.944 15 O -0.559 6.559 16 C -0.109 4.109 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.108 4.108 22 H 0.082 0.918 23 H 0.054 0.946 24 H 0.007 0.993 25 H 0.002 0.998 26 H -0.042 1.042 27 H 0.264 0.736 28 H 0.023 0.977 29 H 0.097 0.903 30 H 0.377 0.623 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.041 0.959 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.912 -16.729 -8.618 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.269 5.269 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.794 3.206 9 H -0.187 1.187 10 H -0.204 1.204 11 H -0.201 1.201 12 C -0.101 4.101 13 C 0.066 3.934 14 H 0.074 0.926 15 O -0.365 6.365 16 C -0.128 4.128 17 C -0.152 4.152 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.146 4.146 22 H 0.101 0.899 23 H 0.073 0.927 24 H 0.026 0.974 25 H 0.020 0.980 26 H -0.024 1.024 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.115 0.885 30 H 0.225 0.775 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.501 -16.330 -7.964 18.340 hybrid contribution -0.582 1.208 -0.340 1.383 sum 1.920 -15.122 -8.304 17.359 Atomic orbital electron populations 1.22218 0.87518 1.01074 0.99850 1.61975 1.07925 1.15068 1.41887 1.19392 0.93642 0.83959 0.94753 1.21519 1.34723 0.97479 1.02413 0.92073 1.25936 0.94993 0.98063 1.00782 1.70095 1.39537 1.11849 1.36201 0.85322 0.78108 0.78206 0.78922 1.18738 1.20410 1.20137 1.22891 0.97434 0.98325 0.91458 1.21726 0.93976 0.91235 0.86444 0.92609 1.86608 1.75985 1.32269 1.41688 1.21737 0.96277 0.98134 0.96643 1.21617 0.98799 0.95747 0.99049 1.21509 0.96158 1.00520 0.97086 1.21533 0.95122 0.96977 1.01752 1.21533 0.99320 0.97541 0.97046 1.21449 0.94398 1.00008 0.98705 0.89895 0.92703 0.97407 0.97981 1.02421 0.92695 0.95898 0.88497 0.77468 0.91429 0.90884 0.91458 0.92357 0.90600 0.91040 0.91717 0.92394 0.91487 0.93978 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 9.31 127.69 1.19 2.82 16 2 N -0.54 -24.40 4.64 -927.07 -4.31 -28.70 16 3 C 0.21 11.66 4.55 85.55 0.39 12.04 16 4 C -0.52 -30.99 8.54 25.60 0.22 -30.77 16 5 H 0.06 3.57 7.10 -2.91 -0.02 3.55 16 6 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 7 N -0.94 -58.06 13.29 21.45 0.28 -57.77 16 8 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 9 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.03 0.96 4.10 86.30 0.35 1.32 16 13 C 0.13 4.30 2.86 30.60 0.09 4.39 16 14 H 0.06 2.42 6.63 -2.39 -0.02 2.41 16 15 O -0.56 -18.82 12.58 -148.98 -1.87 -20.70 16 16 C -0.11 -2.78 2.08 -10.79 -0.02 -2.81 16 17 C -0.11 -2.20 4.55 30.59 0.14 -2.06 16 18 C -0.12 -1.85 5.92 30.60 0.18 -1.67 16 19 C -0.12 -1.84 5.92 30.60 0.18 -1.66 16 20 C -0.12 -2.24 5.92 30.59 0.18 -2.06 16 21 C -0.11 -2.65 5.06 30.59 0.15 -2.50 16 22 H 0.08 2.56 7.94 -2.39 -0.02 2.54 16 23 H 0.05 2.32 6.91 -2.39 -0.02 2.30 16 24 H 0.01 0.29 8.13 -2.39 -0.02 0.27 16 25 H 0.00 0.13 6.54 -2.39 -0.02 0.11 16 26 H -0.04 -2.52 8.11 -2.39 -0.02 -2.54 16 27 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 28 H 0.02 0.85 8.00 -2.39 -0.02 0.83 16 29 H 0.10 2.72 6.42 -2.39 -0.02 2.71 16 30 H 0.38 9.31 7.33 -74.06 -0.54 8.76 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.27 6.78 -2.39 -0.02 1.26 16 33 H 0.07 1.26 6.56 -2.39 -0.02 1.25 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 40 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.65 7.68 -2.39 -0.02 1.63 16 Total: -1.00 -68.48 313.23 0.09 -68.40 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.44 Total: 13.54 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 3.52 Total: -22.50 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -4.02 Total: -86.48 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -1.87 Total: -20.70 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -68.48 0.09 -68.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354864125.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.498 kcal (2) G-P(sol) polarization free energy of solvation -68.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds