Wall clock time and date at job start Mon Mar 30 2020 03:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46784 * 2 1 4 4 C 1.36934 * 120.00066 * 84.26402 * 3 2 1 5 5 H 1.08001 * 120.00336 * 162.34526 * 4 3 2 6 6 C 1.38816 * 119.99755 * 342.33901 * 4 3 2 7 7 N 1.31620 * 119.99733 * 25.34608 * 6 4 3 8 8 Si 1.86803 * 120.00057 * 205.34408 * 6 4 3 9 9 H 1.48503 * 109.47196 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46983 * 119.99920 * 8 6 4 11 11 H 1.48502 * 109.46792 * 240.00270 * 8 6 4 12 12 C 1.46506 * 119.99968 * 264.25371 * 3 2 1 13 13 C 1.52996 * 109.47463 * 263.50402 * 12 3 2 14 14 H 1.08994 * 109.47656 * 300.99964 * 13 12 3 15 15 O 1.42901 * 109.46660 * 60.99894 * 13 12 3 16 16 C 1.52998 * 109.47020 * 180.99289 * 13 12 3 17 17 C 1.53007 * 109.47051 * 180.02562 * 16 13 12 18 18 C 1.52993 * 109.47057 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.47322 * 59.99758 * 18 17 16 20 20 C 1.52997 * 109.47187 * 300.00231 * 19 18 17 21 21 C 1.52993 * 109.47178 * 59.99680 * 20 19 18 22 22 H 1.09004 * 109.46494 * 187.34522 * 1 2 3 23 23 H 1.08997 * 109.47098 * 307.34169 * 1 2 3 24 24 H 1.08994 * 109.47324 * 67.34499 * 1 2 3 25 25 H 1.09002 * 109.47094 * 240.00357 * 2 1 3 26 26 H 1.08996 * 109.47527 * 120.00144 * 2 1 3 27 27 H 0.97008 * 119.99541 * 180.02562 * 7 6 4 28 28 H 1.09008 * 109.46422 * 143.50667 * 12 3 2 29 29 H 1.09002 * 109.47157 * 23.51234 * 12 3 2 30 30 H 0.96701 * 114.00685 * 60.00087 * 15 13 12 31 31 H 1.09003 * 109.47530 * 300.00552 * 16 13 12 32 32 H 1.08997 * 109.46560 * 59.99996 * 17 16 13 33 33 H 1.08998 * 109.46665 * 300.00287 * 17 16 13 34 34 H 1.09001 * 109.47098 * 180.02562 * 18 17 16 35 35 H 1.09003 * 109.47233 * 300.00010 * 18 17 16 36 36 H 1.09003 * 109.46760 * 59.99963 * 19 18 17 37 37 H 1.09000 * 109.46809 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47051 * 299.99553 * 20 19 18 39 39 H 1.09002 * 109.46934 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47098 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47324 * 60.00471 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1347 2.0663 1.1799 5 1 2.7460 2.9553 1.2303 6 6 1.4670 1.6182 2.3114 7 7 1.1497 0.3461 2.4277 8 14 1.0188 2.8205 3.6690 9 1 1.4832 4.1814 3.2982 10 1 -0.4548 2.8336 3.8519 11 1 1.6712 2.4024 4.9358 12 6 2.3822 2.0296 -1.2624 13 6 3.8927 1.9160 -1.4773 14 1 4.4147 2.3889 -0.6455 15 8 4.2613 0.5372 -1.5487 16 6 4.2760 2.6146 -2.7834 17 6 5.7866 2.5005 -2.9985 18 6 6.1699 3.1996 -4.3043 19 6 5.7758 4.6759 -4.2271 20 6 4.2654 4.7900 -4.0119 21 6 3.8820 4.0909 -2.7062 22 1 -0.3632 -1.0193 0.1314 23 1 -0.3633 0.6233 0.8170 24 1 -0.3634 0.3958 -0.9483 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.6827 0.0330 3.2183 28 1 2.0985 3.0814 -1.2256 29 1 1.8603 1.5411 -2.0854 30 1 3.8335 0.0523 -2.2678 31 1 3.7541 2.1416 -3.6152 32 1 6.0672 1.4487 -3.0531 33 1 6.3087 2.9732 -2.1667 34 1 7.2460 3.1179 -4.4578 35 1 5.6477 2.7272 -5.1363 36 1 6.2981 5.1483 -3.3951 37 1 6.0494 5.1740 -5.1573 38 1 3.7431 4.3176 -4.8440 39 1 3.9846 5.8419 -3.9575 40 1 2.8060 4.1726 -2.5527 41 1 4.4041 4.5633 -1.8742 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354895194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:29 Heat of formation + Delta-G solvation = -51.701355 kcal Electronic energy + Delta-G solvation = -18606.422250 eV Core-core repulsion = 15907.073485 eV Total energy + Delta-G solvation = -2699.348765 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -39.02768 -36.55419 -35.00891 -31.78464 -30.83390 -30.56513 -29.29907 -26.60388 -24.00042 -22.80474 -22.11650 -20.66286 -20.02135 -19.59473 -16.78349 -15.87587 -15.19563 -14.86865 -14.70020 -14.04820 -13.90073 -13.63569 -13.51109 -12.92330 -12.68924 -12.13168 -12.09505 -11.74066 -11.60784 -11.22884 -11.09041 -10.98847 -10.79298 -10.66555 -10.58915 -10.52258 -10.25298 -10.20275 -9.86762 -9.77430 -9.65232 -9.42542 -9.09383 -8.16541 -6.63940 -5.62761 -3.01513 3.42884 3.52126 3.53334 4.55455 4.76502 4.79836 4.87003 5.11951 5.24775 5.38587 5.42774 5.47742 5.61757 5.64044 5.70759 5.74322 5.82712 5.96049 6.07418 6.09072 6.20085 6.21094 6.28658 6.30590 6.44363 6.51131 6.60284 6.66883 6.71073 6.91855 7.02440 7.11782 7.24413 7.80395 8.00969 8.01895 8.35386 8.60407 9.35534 9.99807 10.45658 11.31859 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030155 B = 0.006301 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.315037 B = 4442.395640 C = 4867.633957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.161 3.839 3 N -0.593 5.593 4 C -0.249 4.249 5 H 0.071 0.929 6 C 0.005 3.995 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.294 1.294 12 C 0.124 3.876 13 C 0.087 3.913 14 H 0.091 0.909 15 O -0.551 6.551 16 C -0.115 4.115 17 C -0.109 4.109 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.115 4.115 22 H 0.023 0.977 23 H 0.067 0.933 24 H 0.004 0.996 25 H -0.001 1.001 26 H 0.107 0.893 27 H 0.249 0.751 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.358 0.642 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.904 4.965 -12.953 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.036 3.964 3 N -0.314 5.314 4 C -0.378 4.378 5 H 0.089 0.911 6 C -0.192 4.192 7 N -0.536 5.536 8 Si 0.715 3.285 9 H -0.206 1.206 10 H -0.217 1.217 11 H -0.221 1.221 12 C -0.004 4.004 13 C 0.026 3.974 14 H 0.109 0.891 15 O -0.354 6.354 16 C -0.135 4.135 17 C -0.146 4.146 18 C -0.156 4.156 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.152 4.152 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.023 0.977 25 H 0.017 0.983 26 H 0.125 0.875 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.203 0.797 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.178 5.043 -12.275 14.638 hybrid contribution -0.696 0.573 0.256 0.937 sum 5.482 5.615 -12.019 14.354 Atomic orbital electron populations 1.22275 1.00362 0.98730 0.98543 1.21066 0.91470 0.84699 0.99180 1.44010 1.75390 1.11101 1.00906 1.19149 1.23724 1.06836 0.88059 0.91117 1.24831 1.00288 0.95954 0.98112 1.70147 1.43790 1.11774 1.27851 0.86468 0.78371 0.81757 0.81952 1.20565 1.21674 1.22127 1.21451 0.92362 0.97344 0.89253 1.22827 0.98483 0.81234 0.94905 0.89110 1.86617 1.70878 1.22099 1.55758 1.21879 0.96065 0.96271 0.99264 1.21490 0.95774 1.00585 0.96779 1.21545 1.00206 0.95597 0.98276 1.21537 0.96439 0.96641 1.01055 1.21528 0.95791 1.00051 0.98161 1.21582 1.01557 0.94873 0.97223 0.95788 0.91433 0.97669 0.98284 0.87497 0.93951 0.93162 0.94291 0.79705 0.91762 0.91623 0.92305 0.92576 0.92410 0.92176 0.92679 0.92322 0.92381 0.91276 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.45 37.16 0.35 -2.98 16 2 C 0.16 3.99 5.51 -4.04 -0.02 3.97 16 3 N -0.59 -14.74 2.44 -173.23 -0.42 -15.17 16 4 C -0.25 -6.81 9.64 -15.06 -0.15 -6.95 16 5 H 0.07 1.91 7.95 -52.49 -0.42 1.50 16 6 C 0.01 0.15 4.68 -17.43 -0.08 0.07 16 7 N -0.89 -25.31 8.40 55.49 0.47 -24.84 16 8 Si 0.88 21.78 29.62 -169.99 -5.04 16.75 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 C 0.12 2.48 4.99 -4.04 -0.02 2.46 16 13 C 0.09 1.56 2.77 -26.73 -0.07 1.48 16 14 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 15 O -0.55 -10.27 12.20 -35.23 -0.43 -10.70 16 16 C -0.12 -1.59 1.96 -90.62 -0.18 -1.77 16 17 C -0.11 -1.41 5.06 -26.73 -0.14 -1.54 16 18 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 19 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 20 C -0.12 -1.29 5.92 -26.74 -0.16 -1.45 16 21 C -0.11 -1.50 4.85 -26.74 -0.13 -1.63 16 22 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 1.80 6.24 -51.93 -0.32 1.48 16 24 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 25 H 0.00 -0.03 7.83 -51.93 -0.41 -0.43 16 26 H 0.11 3.03 5.79 -51.93 -0.30 2.72 16 27 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.05 0.99 6.33 -51.92 -0.33 0.67 16 29 H 0.04 0.73 8.02 -51.93 -0.42 0.31 16 30 H 0.36 5.47 9.05 45.56 0.41 5.88 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.89 7.68 -51.93 -0.40 0.49 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.94 6.41 -51.93 -0.33 0.61 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -28.97 311.96 -8.35 -37.32 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.72 Total: 3.12 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -0.91 Total: -11.18 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.04 Total: -40.01 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.43 Total: -10.70 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.04 Total: 16.75 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.97 -8.35 -37.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354895194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.384 kcal (2) G-P(sol) polarization free energy of solvation -28.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds