Wall clock time and date at job start Mon Mar 30 2020 03:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46784 * 2 1 4 4 C 1.36934 * 120.00066 * 84.26402 * 3 2 1 5 5 H 1.08001 * 120.00336 * 162.34526 * 4 3 2 6 6 C 1.38816 * 119.99755 * 342.33901 * 4 3 2 7 7 N 1.31620 * 119.99733 * 25.34608 * 6 4 3 8 8 Si 1.86803 * 120.00057 * 205.34408 * 6 4 3 9 9 H 1.48503 * 109.47196 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46983 * 119.99920 * 8 6 4 11 11 H 1.48502 * 109.46792 * 240.00270 * 8 6 4 12 12 C 1.46506 * 119.99968 * 264.25371 * 3 2 1 13 13 C 1.52996 * 109.47463 * 263.50402 * 12 3 2 14 14 H 1.08994 * 109.47656 * 300.99964 * 13 12 3 15 15 O 1.42901 * 109.46660 * 60.99894 * 13 12 3 16 16 C 1.52998 * 109.47020 * 180.99289 * 13 12 3 17 17 C 1.53007 * 109.47051 * 180.02562 * 16 13 12 18 18 C 1.52993 * 109.47057 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.47322 * 59.99758 * 18 17 16 20 20 C 1.52997 * 109.47187 * 300.00231 * 19 18 17 21 21 C 1.52993 * 109.47178 * 59.99680 * 20 19 18 22 22 H 1.09004 * 109.46494 * 187.34522 * 1 2 3 23 23 H 1.08997 * 109.47098 * 307.34169 * 1 2 3 24 24 H 1.08994 * 109.47324 * 67.34499 * 1 2 3 25 25 H 1.09002 * 109.47094 * 240.00357 * 2 1 3 26 26 H 1.08996 * 109.47527 * 120.00144 * 2 1 3 27 27 H 0.97008 * 119.99541 * 180.02562 * 7 6 4 28 28 H 1.09008 * 109.46422 * 143.50667 * 12 3 2 29 29 H 1.09002 * 109.47157 * 23.51234 * 12 3 2 30 30 H 0.96701 * 114.00685 * 60.00087 * 15 13 12 31 31 H 1.09003 * 109.47530 * 300.00552 * 16 13 12 32 32 H 1.08997 * 109.46560 * 59.99996 * 17 16 13 33 33 H 1.08998 * 109.46665 * 300.00287 * 17 16 13 34 34 H 1.09001 * 109.47098 * 180.02562 * 18 17 16 35 35 H 1.09003 * 109.47233 * 300.00010 * 18 17 16 36 36 H 1.09003 * 109.46760 * 59.99963 * 19 18 17 37 37 H 1.09000 * 109.46809 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47051 * 299.99553 * 20 19 18 39 39 H 1.09002 * 109.46934 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47098 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47324 * 60.00471 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1347 2.0663 1.1799 5 1 2.7460 2.9553 1.2303 6 6 1.4670 1.6182 2.3114 7 7 1.1497 0.3461 2.4277 8 14 1.0188 2.8205 3.6690 9 1 1.4832 4.1814 3.2982 10 1 -0.4548 2.8336 3.8519 11 1 1.6712 2.4024 4.9358 12 6 2.3822 2.0296 -1.2624 13 6 3.8927 1.9160 -1.4773 14 1 4.4147 2.3889 -0.6455 15 8 4.2613 0.5372 -1.5487 16 6 4.2760 2.6146 -2.7834 17 6 5.7866 2.5005 -2.9985 18 6 6.1699 3.1996 -4.3043 19 6 5.7758 4.6759 -4.2271 20 6 4.2654 4.7900 -4.0119 21 6 3.8820 4.0909 -2.7062 22 1 -0.3632 -1.0193 0.1314 23 1 -0.3633 0.6233 0.8170 24 1 -0.3634 0.3958 -0.9483 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.6827 0.0330 3.2183 28 1 2.0985 3.0814 -1.2256 29 1 1.8603 1.5411 -2.0854 30 1 3.8335 0.0523 -2.2678 31 1 3.7541 2.1416 -3.6152 32 1 6.0672 1.4487 -3.0531 33 1 6.3087 2.9732 -2.1667 34 1 7.2460 3.1179 -4.4578 35 1 5.6477 2.7272 -5.1363 36 1 6.2981 5.1483 -3.3951 37 1 6.0494 5.1740 -5.1573 38 1 3.7431 4.3176 -4.8440 39 1 3.9846 5.8419 -3.9575 40 1 2.8060 4.1726 -2.5527 41 1 4.4041 4.5633 -1.8742 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354895194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:22 Heat of formation + Delta-G solvation = -68.627552 kcal Electronic energy + Delta-G solvation = -18607.156225 eV Core-core repulsion = 15907.073485 eV Total energy + Delta-G solvation = -2700.082740 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.23164 -38.04254 -36.69390 -33.39846 -32.47266 -31.54354 -31.05802 -28.26039 -25.78240 -24.19111 -23.25731 -22.10851 -21.68627 -20.63183 -18.71719 -17.39996 -16.71165 -16.39449 -16.09228 -15.45425 -15.30128 -15.01973 -14.82681 -14.43321 -13.99690 -13.76542 -13.38395 -13.24779 -13.07925 -12.90340 -12.70428 -12.58445 -12.32126 -12.22296 -11.96360 -11.86386 -11.67122 -11.64223 -11.54857 -11.28269 -11.18083 -10.80141 -10.60257 -10.19849 -8.59747 -7.71780 -5.11035 1.45016 1.49286 1.57409 2.54651 3.28134 3.54541 3.68098 3.86658 3.98131 4.05674 4.24349 4.39203 4.48531 4.52621 4.62411 4.69479 4.69716 4.75650 4.81383 4.82435 5.01963 5.06227 5.08539 5.18313 5.22071 5.24769 5.30626 5.32020 5.35321 5.40791 5.46975 5.55212 5.66161 5.68651 5.95507 6.02743 6.53388 7.05057 7.27354 8.02268 8.42151 9.20901 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030155 B = 0.006301 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.315037 B = 4442.395640 C = 4867.633957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.164 3.836 3 N -0.609 5.609 4 C -0.258 4.258 5 H 0.066 0.934 6 C -0.042 4.042 7 N -0.910 5.910 8 Si 0.943 3.057 9 H -0.273 1.273 10 H -0.292 1.292 11 H -0.298 1.298 12 C 0.122 3.878 13 C 0.099 3.901 14 H 0.057 0.943 15 O -0.569 6.569 16 C -0.102 4.102 17 C -0.106 4.106 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.113 4.113 21 C -0.115 4.115 22 H 0.033 0.967 23 H 0.035 0.965 24 H 0.022 0.978 25 H 0.020 0.980 26 H 0.070 0.930 27 H 0.244 0.756 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.374 0.626 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.114 5.834 -14.984 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.039 3.961 3 N -0.330 5.330 4 C -0.388 4.388 5 H 0.084 0.916 6 C -0.237 4.237 7 N -0.558 5.558 8 Si 0.773 3.227 9 H -0.198 1.198 10 H -0.219 1.219 11 H -0.225 1.225 12 C -0.004 4.004 13 C 0.038 3.962 14 H 0.075 0.925 15 O -0.375 6.375 16 C -0.122 4.122 17 C -0.144 4.144 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.151 4.151 21 C -0.153 4.153 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.221 0.779 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.398 5.928 -14.339 16.784 hybrid contribution -0.718 0.273 0.861 1.154 sum 5.680 6.201 -13.478 15.886 Atomic orbital electron populations 1.22080 0.99639 0.98779 0.98083 1.20872 0.92027 0.84808 0.98377 1.44193 1.75800 1.11249 1.01773 1.19358 1.23470 1.06671 0.89269 0.91592 1.25424 1.00866 0.97148 1.00296 1.70327 1.44509 1.12736 1.28182 0.85560 0.77548 0.80212 0.79413 1.19752 1.21945 1.22534 1.21639 0.93810 0.97197 0.87758 1.22522 0.96288 0.81321 0.96076 0.92507 1.86574 1.71301 1.22664 1.56953 1.21727 0.96948 0.96377 0.97108 1.21449 0.94781 1.00407 0.97773 1.21515 1.01036 0.95649 0.96924 1.21548 0.95861 0.96397 1.01826 1.21504 0.96347 1.00384 0.96858 1.21576 1.00957 0.94437 0.98324 0.94753 0.94633 0.95860 0.96132 0.91180 0.94550 0.93036 0.92429 0.77868 0.90199 0.92280 0.93778 0.91550 0.91412 0.92764 0.90766 0.91346 0.91458 0.91927 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 9.45 71.98 0.68 -5.27 16 2 C 0.16 8.12 5.51 86.38 0.48 8.60 16 3 N -0.61 -30.22 2.44 -701.98 -1.72 -31.93 16 4 C -0.26 -14.27 9.64 84.03 0.81 -13.46 16 5 H 0.07 3.63 7.95 -2.91 -0.02 3.61 16 6 C -0.04 -2.36 4.68 84.86 0.40 -1.96 16 7 N -0.91 -52.80 8.40 21.65 0.18 -52.61 16 8 Si 0.94 45.49 29.62 68.60 2.03 47.52 16 9 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 11 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 12 C 0.12 4.78 4.99 86.38 0.43 5.21 16 13 C 0.10 3.50 2.77 30.59 0.08 3.58 16 14 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 15 O -0.57 -20.81 12.20 -148.98 -1.82 -22.63 16 16 C -0.10 -2.66 1.96 -10.79 -0.02 -2.68 16 17 C -0.11 -2.60 5.06 30.59 0.15 -2.44 16 18 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 19 C -0.12 -2.12 5.92 30.59 0.18 -1.94 16 20 C -0.11 -2.16 5.92 30.59 0.18 -1.98 16 21 C -0.12 -2.84 4.85 30.59 0.15 -2.69 16 22 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.03 1.88 6.24 -2.39 -0.01 1.87 16 24 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.02 0.91 7.83 -2.39 -0.02 0.89 16 26 H 0.07 4.04 5.79 -2.39 -0.01 4.02 16 27 H 0.24 13.84 8.31 -92.70 -0.77 13.07 16 28 H 0.05 2.00 6.33 -2.38 -0.02 1.98 16 29 H 0.06 2.03 8.02 -2.39 -0.02 2.01 16 30 H 0.37 10.76 9.05 -74.06 -0.67 10.09 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.51 7.68 -2.39 -0.02 1.50 16 33 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.61 6.41 -2.39 -0.02 1.60 16 41 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -62.03 311.96 2.70 -59.33 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.31 Total: 17.31 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 3.70 Total: -16.99 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -1.53 Total: -84.55 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.82 Total: -22.63 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -62.03 2.70 -59.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354895194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.295 kcal (2) G-P(sol) polarization free energy of solvation -62.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds