Wall clock time and date at job start Mon Mar 30 2020 03:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47584 * 2 1 4 4 C 1.36939 * 119.99510 * 270.89128 * 3 2 1 5 5 H 1.07996 * 120.00081 * 325.99187 * 4 3 2 6 6 C 1.38813 * 119.99904 * 146.00480 * 4 3 2 7 7 N 1.31627 * 119.99944 * 336.65888 * 6 4 3 8 8 Si 1.86800 * 120.00114 * 156.65724 * 6 4 3 9 9 H 1.48504 * 109.46874 * 59.99757 * 8 6 4 10 10 H 1.48505 * 109.47085 * 179.97438 * 8 6 4 11 11 H 1.48490 * 109.47382 * 300.00063 * 8 6 4 12 12 C 1.46495 * 120.00278 * 90.88099 * 3 2 1 13 13 C 1.53007 * 109.46782 * 90.00462 * 12 3 2 14 14 H 1.08998 * 109.47025 * 60.00238 * 13 12 3 15 15 O 1.42905 * 109.46943 * 300.00011 * 13 12 3 16 16 C 1.52998 * 109.46864 * 180.02562 * 13 12 3 17 17 C 1.52998 * 109.47450 * 299.99788 * 16 13 12 18 18 C 1.52998 * 109.47539 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.47212 * 59.99717 * 18 17 16 20 20 C 1.53000 * 109.47314 * 300.00241 * 19 18 17 21 21 C 1.53006 * 109.46883 * 60.00082 * 20 19 18 22 22 H 1.08993 * 109.47219 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46949 * 300.00855 * 1 2 3 24 24 H 1.09004 * 109.46493 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.47366 * 239.99401 * 2 1 3 26 26 H 1.08999 * 109.46917 * 119.99607 * 2 1 3 27 27 H 0.96998 * 119.99599 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47524 * 330.01069 * 12 3 2 29 29 H 1.08998 * 109.47418 * 210.00162 * 12 3 2 30 30 H 0.96697 * 113.99801 * 300.00146 * 15 13 12 31 31 H 1.09003 * 109.47533 * 60.00552 * 16 13 12 32 32 H 1.08998 * 109.47325 * 300.00365 * 17 16 13 33 33 H 1.08993 * 109.46860 * 60.00092 * 17 16 13 34 34 H 1.09007 * 109.46610 * 300.00148 * 18 17 16 35 35 H 1.08996 * 109.47441 * 180.02562 * 18 17 16 36 36 H 1.08999 * 109.47202 * 180.02562 * 19 18 17 37 37 H 1.08998 * 109.46970 * 60.00054 * 19 18 17 38 38 H 1.08998 * 109.47472 * 299.99890 * 20 19 18 39 39 H 1.09003 * 109.47271 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.47122 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.47223 * 59.99656 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2293 2.0327 -1.1858 5 1 2.5760 1.4843 -2.0491 6 6 1.9976 3.3983 -1.2782 7 7 1.1731 3.9844 -0.4360 8 14 2.8560 4.4042 -2.5976 9 1 2.4815 3.8852 -3.9376 10 1 2.4418 5.8257 -2.4842 11 1 4.3267 4.3010 -2.4203 12 6 2.2811 2.0653 1.2685 13 6 3.7324 1.8226 1.6878 14 1 4.4020 2.2106 0.9203 15 8 3.9536 0.4199 1.8483 16 6 4.0065 2.5366 3.0129 17 6 3.7695 4.0383 2.8418 18 6 4.0442 4.7524 4.1667 19 6 5.4956 4.5096 4.5855 20 6 5.7327 3.0078 4.7568 21 6 5.4580 2.2938 3.4317 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.0110 4.9385 -0.5008 28 1 1.6115 1.6773 2.0361 29 1 2.1123 3.1352 1.1461 30 1 3.3905 0.0070 2.5171 31 1 3.3369 2.1481 3.7803 32 1 4.4391 4.4268 2.0745 33 1 2.7357 4.2112 2.5431 34 1 3.3748 4.3640 4.9343 35 1 3.8749 5.8222 4.0449 36 1 5.6912 5.0180 5.5297 37 1 6.1650 4.8979 3.8179 38 1 5.0633 2.6195 5.5244 39 1 6.7668 2.8349 5.0547 40 1 5.6264 1.2239 3.5538 41 1 6.1274 2.6822 2.6642 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354895199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:37 Heat of formation + Delta-G solvation = -65.068933 kcal Electronic energy + Delta-G solvation = -18853.353580 eV Core-core repulsion = 16153.425153 eV Total energy + Delta-G solvation = -2699.928426 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.84794 -36.45582 -34.79665 -31.76480 -31.30490 -30.40490 -29.00549 -26.64509 -24.01744 -22.77371 -22.05912 -20.61168 -19.90196 -19.46153 -16.84759 -15.54385 -15.11212 -14.89080 -14.32113 -13.91285 -13.84899 -13.66552 -13.60177 -13.07198 -12.57450 -12.25971 -11.93388 -11.83392 -11.74754 -11.13309 -11.03465 -10.96714 -10.82965 -10.65201 -10.51854 -10.33580 -10.12834 -10.09030 -10.00580 -9.81087 -9.70549 -9.49961 -8.90676 -8.44087 -6.49479 -5.72161 -3.24728 3.39446 3.45182 3.48608 4.52786 4.91813 4.96570 5.03460 5.23958 5.33923 5.45129 5.57258 5.61942 5.78532 5.81625 5.86115 5.90051 5.91147 6.20273 6.21659 6.24116 6.26364 6.42037 6.43263 6.45899 6.50044 6.54779 6.61668 6.67344 6.78008 6.80131 6.87184 7.06609 7.21771 7.33847 7.66964 7.87004 8.44203 8.56289 9.25249 9.89913 10.47102 11.26265 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019860 B = 0.008776 C = 0.006980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.527076 B = 3189.887898 C = 4010.650423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 N -0.578 5.578 4 C -0.249 4.249 5 H 0.059 0.941 6 C 0.006 3.994 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.284 1.284 12 C 0.115 3.885 13 C 0.089 3.911 14 H 0.090 0.910 15 O -0.561 6.561 16 C -0.112 4.112 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.109 4.109 22 H 0.029 0.971 23 H 0.040 0.960 24 H 0.052 0.948 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.253 0.747 28 H 0.020 0.980 29 H 0.112 0.888 30 H 0.355 0.645 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.211 -1.252 9.859 11.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.021 3.979 3 N -0.298 5.298 4 C -0.379 4.379 5 H 0.077 0.923 6 C -0.193 4.193 7 N -0.533 5.533 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.217 1.217 11 H -0.210 1.210 12 C -0.012 4.012 13 C 0.028 3.972 14 H 0.108 0.892 15 O -0.364 6.364 16 C -0.131 4.131 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.146 4.146 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.129 0.871 30 H 0.200 0.800 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.587 -0.974 9.369 10.952 hybrid contribution -0.055 0.628 -0.232 0.672 sum 5.532 -0.346 9.136 10.686 Atomic orbital electron populations 1.22321 1.00234 0.98154 1.01673 1.20836 0.91227 0.87497 0.98360 1.43685 1.74313 1.09758 1.02037 1.19062 1.37469 0.91158 0.90224 0.92289 1.25015 0.97660 0.98502 0.98171 1.69974 1.33683 1.10298 1.39358 0.86528 0.80059 0.79257 0.82002 1.20855 1.21681 1.21020 1.21704 0.90308 1.02770 0.86435 1.22845 1.00996 0.79492 0.93876 0.89176 1.86561 1.64646 1.22903 1.62295 1.21818 0.96186 0.96337 0.98772 1.21565 1.02916 0.94225 0.96470 1.21532 0.96050 0.99935 0.97977 1.21541 0.97313 0.96278 1.00516 1.21541 1.00445 0.95493 0.98057 1.21503 0.96739 1.00086 0.96293 0.95243 0.94068 0.92848 0.94400 0.94491 0.93681 0.96180 0.87073 0.79980 0.92015 0.92183 0.90475 0.92425 0.92440 0.92813 0.92252 0.92461 0.92747 0.91853 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 10.24 37.16 0.38 -2.99 16 2 C 0.15 3.20 6.12 -4.04 -0.02 3.18 16 3 N -0.58 -14.36 2.37 -173.24 -0.41 -14.77 16 4 C -0.25 -6.84 9.48 -15.06 -0.14 -6.99 16 5 H 0.06 1.65 7.93 -52.49 -0.42 1.23 16 6 C 0.01 0.16 4.94 -17.43 -0.09 0.07 16 7 N -0.89 -24.98 11.34 55.49 0.63 -24.35 16 8 Si 0.89 21.62 29.61 -169.99 -5.03 16.58 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.11 2.59 4.63 -4.04 -0.02 2.57 16 13 C 0.09 1.74 2.82 -26.73 -0.08 1.67 16 14 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 15 O -0.56 -10.52 11.40 -35.23 -0.40 -10.92 16 16 C -0.11 -1.80 1.96 -90.62 -0.18 -1.97 16 17 C -0.11 -1.88 4.85 -26.73 -0.13 -2.00 16 18 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 19 C -0.12 -1.46 5.92 -26.73 -0.16 -1.61 16 20 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 21 C -0.11 -1.57 5.06 -26.72 -0.14 -1.71 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.04 0.83 8.05 -51.93 -0.42 0.41 16 26 H 0.04 0.73 6.90 -51.93 -0.36 0.37 16 27 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.02 0.43 8.07 -51.93 -0.42 0.02 16 29 H 0.11 2.79 3.62 -51.93 -0.19 2.61 16 30 H 0.36 5.48 8.79 45.56 0.40 5.88 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.43 6.43 -51.93 -0.33 1.10 16 34 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 315.53 15.07 4.76 4.76 Total: -1.00 -28.47 315.53 -8.11 -36.58 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.76 Total: 5.27 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -0.88 Total: -13.14 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.22 Total: -39.12 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -0.40 Total: -10.92 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.47 -8.11 -36.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354895199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.493 kcal (2) G-P(sol) polarization free energy of solvation -28.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds