Wall clock time and date at job start Mon Mar 30 2020 03:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47584 * 2 1 4 4 C 1.36939 * 119.99510 * 270.89128 * 3 2 1 5 5 H 1.07996 * 120.00081 * 325.99187 * 4 3 2 6 6 C 1.38813 * 119.99904 * 146.00480 * 4 3 2 7 7 N 1.31627 * 119.99944 * 336.65888 * 6 4 3 8 8 Si 1.86800 * 120.00114 * 156.65724 * 6 4 3 9 9 H 1.48504 * 109.46874 * 59.99757 * 8 6 4 10 10 H 1.48505 * 109.47085 * 179.97438 * 8 6 4 11 11 H 1.48490 * 109.47382 * 300.00063 * 8 6 4 12 12 C 1.46495 * 120.00278 * 90.88099 * 3 2 1 13 13 C 1.53007 * 109.46782 * 90.00462 * 12 3 2 14 14 H 1.08998 * 109.47025 * 60.00238 * 13 12 3 15 15 O 1.42905 * 109.46943 * 300.00011 * 13 12 3 16 16 C 1.52998 * 109.46864 * 180.02562 * 13 12 3 17 17 C 1.52998 * 109.47450 * 299.99788 * 16 13 12 18 18 C 1.52998 * 109.47539 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.47212 * 59.99717 * 18 17 16 20 20 C 1.53000 * 109.47314 * 300.00241 * 19 18 17 21 21 C 1.53006 * 109.46883 * 60.00082 * 20 19 18 22 22 H 1.08993 * 109.47219 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46949 * 300.00855 * 1 2 3 24 24 H 1.09004 * 109.46493 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.47366 * 239.99401 * 2 1 3 26 26 H 1.08999 * 109.46917 * 119.99607 * 2 1 3 27 27 H 0.96998 * 119.99599 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47524 * 330.01069 * 12 3 2 29 29 H 1.08998 * 109.47418 * 210.00162 * 12 3 2 30 30 H 0.96697 * 113.99801 * 300.00146 * 15 13 12 31 31 H 1.09003 * 109.47533 * 60.00552 * 16 13 12 32 32 H 1.08998 * 109.47325 * 300.00365 * 17 16 13 33 33 H 1.08993 * 109.46860 * 60.00092 * 17 16 13 34 34 H 1.09007 * 109.46610 * 300.00148 * 18 17 16 35 35 H 1.08996 * 109.47441 * 180.02562 * 18 17 16 36 36 H 1.08999 * 109.47202 * 180.02562 * 19 18 17 37 37 H 1.08998 * 109.46970 * 60.00054 * 19 18 17 38 38 H 1.08998 * 109.47472 * 299.99890 * 20 19 18 39 39 H 1.09003 * 109.47271 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.47122 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.47223 * 59.99656 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2293 2.0327 -1.1858 5 1 2.5760 1.4843 -2.0491 6 6 1.9976 3.3983 -1.2782 7 7 1.1731 3.9844 -0.4360 8 14 2.8560 4.4042 -2.5976 9 1 2.4815 3.8852 -3.9376 10 1 2.4418 5.8257 -2.4842 11 1 4.3267 4.3010 -2.4203 12 6 2.2811 2.0653 1.2685 13 6 3.7324 1.8226 1.6878 14 1 4.4020 2.2106 0.9203 15 8 3.9536 0.4199 1.8483 16 6 4.0065 2.5366 3.0129 17 6 3.7695 4.0383 2.8418 18 6 4.0442 4.7524 4.1667 19 6 5.4956 4.5096 4.5855 20 6 5.7327 3.0078 4.7568 21 6 5.4580 2.2938 3.4317 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.0110 4.9385 -0.5008 28 1 1.6115 1.6773 2.0361 29 1 2.1123 3.1352 1.1461 30 1 3.3905 0.0070 2.5171 31 1 3.3369 2.1481 3.7803 32 1 4.4391 4.4268 2.0745 33 1 2.7357 4.2112 2.5431 34 1 3.3748 4.3640 4.9343 35 1 3.8749 5.8222 4.0449 36 1 5.6912 5.0180 5.5297 37 1 6.1650 4.8979 3.8179 38 1 5.0633 2.6195 5.5244 39 1 6.7668 2.8349 5.0547 40 1 5.6264 1.2239 3.5538 41 1 6.1274 2.6822 2.6642 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354895199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:34 Heat of formation + Delta-G solvation = -81.546399 kcal Electronic energy + Delta-G solvation = -18854.068096 eV Core-core repulsion = 16153.425153 eV Total energy + Delta-G solvation = -2700.642943 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.21332 -37.99553 -36.49328 -33.73233 -32.69870 -31.55240 -30.73160 -28.38958 -25.85468 -24.26863 -23.28498 -22.10569 -21.62018 -20.65333 -18.76754 -17.03600 -16.88069 -16.47188 -15.89392 -15.51626 -15.49496 -15.07014 -14.85530 -14.52411 -14.15667 -13.83764 -13.48322 -13.21862 -13.10445 -12.90756 -12.84483 -12.47845 -12.29402 -12.18916 -12.08163 -11.96354 -11.72873 -11.66729 -11.51568 -11.39537 -11.23294 -10.78993 -10.53950 -10.39330 -8.50602 -7.77788 -5.35194 1.43195 1.45947 1.52365 2.51479 3.22587 3.55138 3.70449 3.86539 3.98620 4.06718 4.27037 4.40841 4.47426 4.55246 4.56748 4.65900 4.68098 4.70750 4.77810 4.84578 4.90145 4.92969 5.06532 5.10252 5.20272 5.25724 5.29677 5.31253 5.34964 5.42684 5.48122 5.54547 5.58259 5.64417 5.71269 5.85641 6.48457 7.04580 7.21473 7.93359 8.43096 9.14955 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019860 B = 0.008776 C = 0.006980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.527076 B = 3189.887898 C = 4010.650423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.142 3.858 3 N -0.595 5.595 4 C -0.264 4.264 5 H 0.047 0.953 6 C -0.034 4.034 7 N -0.910 5.910 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.284 1.284 12 C 0.116 3.884 13 C 0.106 3.894 14 H 0.053 0.947 15 O -0.567 6.567 16 C -0.101 4.101 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.104 4.104 22 H 0.066 0.934 23 H 0.033 0.967 24 H 0.023 0.977 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.251 0.749 28 H 0.026 0.974 29 H 0.087 0.913 30 H 0.373 0.627 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.955 -1.749 11.565 13.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.017 3.983 3 N -0.315 5.315 4 C -0.394 4.394 5 H 0.065 0.935 6 C -0.231 4.231 7 N -0.555 5.555 8 Si 0.774 3.226 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.210 1.210 12 C -0.010 4.010 13 C 0.045 3.955 14 H 0.071 0.929 15 O -0.373 6.373 16 C -0.120 4.120 17 C -0.150 4.150 18 C -0.150 4.150 19 C -0.155 4.155 20 C -0.150 4.150 21 C -0.142 4.142 22 H 0.085 0.915 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.105 0.895 30 H 0.221 0.779 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.329 -1.493 11.088 12.855 hybrid contribution -0.318 0.701 -0.773 1.091 sum 6.012 -0.792 10.315 11.966 Atomic orbital electron populations 1.22164 0.99185 0.99973 0.99787 1.20970 0.92020 0.86146 0.99201 1.43919 1.74922 1.10759 1.01911 1.19196 1.37449 0.91762 0.91014 0.93490 1.25572 0.98234 0.99171 1.00134 1.70081 1.34582 1.10140 1.40666 0.85687 0.78933 0.77925 0.80083 1.20437 1.21515 1.21003 1.21670 0.92286 1.01188 0.85850 1.22407 0.97852 0.80426 0.94865 0.92875 1.86513 1.65143 1.22304 1.63301 1.21694 0.97944 0.95505 0.96903 1.21498 1.00642 0.94977 0.97849 1.21503 0.97502 0.99807 0.96218 1.21544 0.95869 0.96614 1.01450 1.21518 1.01843 0.95013 0.96625 1.21453 0.94794 1.00566 0.97372 0.91508 0.94779 0.95769 0.94983 0.92103 0.93998 0.95530 0.89531 0.77936 0.90554 0.94177 0.93251 0.91333 0.92039 0.90441 0.92896 0.91272 0.91018 0.91577 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.08 10.24 71.98 0.74 -5.35 16 2 C 0.14 6.10 6.12 86.38 0.53 6.62 16 3 N -0.59 -29.88 2.37 -702.00 -1.67 -31.54 16 4 C -0.26 -14.80 9.48 84.03 0.80 -14.01 16 5 H 0.05 2.70 7.93 -2.91 -0.02 2.67 16 6 C -0.03 -1.89 4.94 84.86 0.42 -1.47 16 7 N -0.91 -52.35 11.34 21.65 0.25 -52.11 16 8 Si 0.95 45.28 29.61 68.60 2.03 47.31 16 9 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 10 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 12 C 0.12 5.33 4.63 86.38 0.40 5.73 16 13 C 0.11 4.16 2.82 30.60 0.09 4.25 16 14 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 15 O -0.57 -20.57 11.40 -148.98 -1.70 -22.27 16 16 C -0.10 -3.17 1.96 -10.79 -0.02 -3.19 16 17 C -0.11 -3.69 4.85 30.59 0.15 -3.55 16 18 C -0.11 -2.86 5.92 30.59 0.18 -2.68 16 19 C -0.12 -2.55 5.92 30.59 0.18 -2.37 16 20 C -0.11 -2.41 5.92 30.60 0.18 -2.22 16 21 C -0.10 -2.84 5.06 30.60 0.15 -2.69 16 22 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 23 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.03 1.39 8.05 -2.39 -0.02 1.37 16 26 H 0.06 2.29 6.90 -2.39 -0.02 2.27 16 27 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 28 H 0.03 1.15 8.07 -2.39 -0.02 1.13 16 29 H 0.09 4.50 3.62 -2.39 -0.01 4.49 16 30 H 0.37 10.63 8.79 -74.06 -0.65 9.98 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.89 6.43 -2.39 -0.02 1.87 16 34 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.77 7.68 -2.39 -0.02 1.75 16 41 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -61.72 315.53 3.03 -58.69 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.33 Total: 20.83 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 3.79 Total: -20.91 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -1.42 Total: -83.65 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -1.70 Total: -22.27 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -61.72 3.03 -58.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354895199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.855 kcal (2) G-P(sol) polarization free energy of solvation -61.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds