Wall clock time and date at job start Mon Mar 30 2020 03:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.47085 * 2 1 4 4 C 1.46901 * 110.99786 * 288.00746 * 3 2 1 5 5 C 1.50698 * 109.47301 * 160.35593 * 4 3 2 6 6 H 1.08006 * 119.99498 * 4.66197 * 5 4 3 7 7 C 1.37875 * 120.00637 * 184.65050 * 5 4 3 8 8 N 1.31515 * 119.99287 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00373 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47125 * 90.00446 * 9 7 5 11 11 H 1.48502 * 109.47079 * 210.00483 * 9 7 5 12 12 H 1.48495 * 109.47270 * 330.00495 * 9 7 5 13 13 C 1.46902 * 111.00242 * 164.05912 * 3 2 1 14 14 C 1.53006 * 109.46720 * 293.95170 * 13 3 2 15 15 H 1.09001 * 109.46921 * 54.99698 * 14 13 3 16 16 C 1.53005 * 109.47064 * 294.99997 * 14 13 3 17 17 C 1.52996 * 109.47042 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.47091 * 60.00184 * 17 16 14 19 19 C 1.53005 * 109.47027 * 299.99825 * 18 17 16 20 20 H 1.09004 * 109.46724 * 300.00100 * 19 18 17 21 21 O 1.42891 * 109.47139 * 180.02562 * 19 18 17 22 22 C 1.52995 * 109.47150 * 175.00191 * 14 13 3 23 23 H 1.09004 * 109.46559 * 179.55284 * 1 2 3 24 24 H 1.09000 * 109.46993 * 299.55001 * 1 2 3 25 25 H 1.08990 * 109.47136 * 59.55330 * 1 2 3 26 26 H 1.09000 * 109.47545 * 240.00049 * 2 1 3 27 27 H 1.09004 * 109.47206 * 119.99624 * 2 1 3 28 28 H 1.08990 * 109.47401 * 280.36107 * 4 3 2 29 29 H 1.09009 * 109.46982 * 40.36105 * 4 3 2 30 30 H 0.97006 * 119.99462 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47128 * 173.95418 * 13 3 2 32 32 H 1.08992 * 109.47107 * 53.94445 * 13 3 2 33 33 H 1.09000 * 109.47123 * 60.00024 * 16 14 13 34 34 H 1.09000 * 109.47053 * 300.00434 * 16 14 13 35 35 H 1.09000 * 109.47529 * 300.00115 * 17 16 14 36 36 H 1.09001 * 109.47276 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.46990 * 59.99601 * 18 17 16 38 38 H 1.09000 * 109.47007 * 179.97438 * 18 17 16 39 39 H 0.96706 * 113.99918 * 59.99958 * 21 19 18 40 40 H 1.09004 * 109.47407 * 59.99457 * 22 14 13 41 41 H 1.09005 * 109.47102 * 300.00057 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7954 2.0226 -1.3043 5 6 1.8466 3.5204 -1.1467 6 1 2.1019 3.9544 -0.1912 7 6 1.5678 4.3369 -2.2221 8 7 1.2566 3.8083 -3.3855 9 14 1.6319 6.1935 -2.0269 10 1 3.0025 6.6763 -2.3331 11 1 0.6649 6.8232 -2.9615 12 1 1.2795 6.5569 -0.6309 13 6 3.4384 1.4418 0.3767 14 6 3.5976 0.9995 1.8327 15 1 3.1522 0.0133 1.9636 16 6 2.8947 2.0022 2.7501 17 6 3.0544 1.5603 4.2061 18 6 4.5416 1.5002 4.5606 19 6 5.2444 0.4974 3.6433 20 1 4.7994 -0.4889 3.7746 21 8 6.6332 0.4409 3.9748 22 6 5.0845 0.9389 2.1877 23 1 -0.3632 -1.0277 -0.0080 24 1 -0.3633 0.5068 0.8940 25 1 -0.3633 0.5207 -0.8859 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.5694 1.7040 -2.0023 29 1 0.8177 1.7309 -1.6880 30 1 1.0600 4.3827 -4.1421 31 1 3.8033 2.4628 0.2651 32 1 4.0127 0.7780 -0.2695 33 1 1.8353 2.0454 2.4972 34 1 3.3399 2.9885 2.6191 35 1 2.6094 0.5739 4.3373 36 1 2.5541 2.2749 4.8597 37 1 4.9865 2.4865 4.4294 38 1 4.6553 1.1858 5.5981 39 1 6.8094 0.1668 4.8853 40 1 5.5299 1.9252 2.0568 41 1 5.5853 0.2246 1.5341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379823918.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:42 Heat of formation + Delta-G solvation = -76.227900 kcal Electronic energy + Delta-G solvation = -18315.527993 eV Core-core repulsion = 15615.115677 eV Total energy + Delta-G solvation = -2700.412315 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.17083 -37.03091 -35.21695 -32.60797 -31.56217 -29.81553 -29.19378 -26.79235 -24.41596 -22.59819 -22.16716 -21.33527 -19.84231 -19.18447 -17.07510 -16.38349 -15.38495 -14.97688 -14.61799 -14.39364 -14.17199 -13.78951 -13.64981 -13.09894 -12.90925 -12.40485 -12.22561 -11.93782 -11.60043 -11.33623 -11.18266 -11.10856 -11.02868 -10.79319 -10.74140 -10.59518 -10.36549 -10.26446 -10.03002 -9.96706 -9.64163 -9.45737 -9.14609 -8.37402 -7.16302 -5.97936 -3.98369 3.34225 3.40412 3.44749 4.13710 4.46563 4.77281 4.81367 5.00923 5.13936 5.31271 5.34507 5.38141 5.54958 5.62703 5.67611 5.68911 5.75036 5.94497 5.95336 6.07723 6.11147 6.15467 6.25011 6.31593 6.32452 6.41368 6.54036 6.58550 6.62939 6.80923 6.86713 6.90891 7.31700 7.40626 7.59956 7.87684 8.18769 8.29335 8.61315 9.09459 9.65365 11.12787 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.006288 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.477847 B = 4451.629743 C = 5028.590136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 N -0.532 5.532 4 C 0.190 3.810 5 C -0.500 4.500 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.069 3.931 14 C -0.079 4.079 15 H 0.066 0.934 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.150 4.150 19 C 0.106 3.894 20 H 0.051 0.949 21 O -0.571 6.571 22 C -0.107 4.107 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.019 0.981 27 H 0.059 0.941 28 H -0.014 1.014 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.081 0.919 32 H 0.018 0.982 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.372 0.628 40 H 0.070 0.930 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.600 -7.507 14.065 16.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 N -0.257 5.257 4 C 0.065 3.935 5 C -0.539 4.539 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.059 4.059 14 C -0.098 4.098 15 H 0.084 0.916 16 C -0.144 4.144 17 C -0.155 4.155 18 C -0.187 4.187 19 C 0.048 3.952 20 H 0.069 0.931 21 O -0.376 6.376 22 C -0.145 4.145 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.004 0.996 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.036 0.964 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.219 0.781 40 H 0.088 0.912 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.325 -6.994 13.590 15.884 hybrid contribution 0.408 0.386 -0.084 0.568 sum 4.733 -6.608 13.505 15.763 Atomic orbital electron populations 1.21737 0.95681 0.99759 1.02834 1.22043 0.95851 0.91293 0.98895 1.62136 1.15633 1.13862 1.34026 1.19776 0.96337 0.94225 0.83137 1.21171 1.45732 0.90704 0.96256 0.91943 1.24982 0.95631 0.98825 0.95275 1.69962 1.47954 1.35129 1.01049 0.86541 0.77674 0.85516 0.77948 1.20834 1.21347 1.19813 1.21970 0.89897 1.01388 0.92665 1.21160 0.93146 0.99411 0.96089 0.91595 1.21488 1.02480 0.98412 0.92009 1.21527 0.94721 1.01277 0.97987 1.22266 0.97115 1.00777 0.98581 1.21828 0.80665 0.97121 0.95598 0.93137 1.86536 1.25129 1.91738 1.34184 1.21510 0.97128 1.02355 0.93521 0.93857 0.92492 0.92081 0.96305 0.92281 0.99578 0.94622 0.93041 0.90075 0.96428 0.89976 0.92121 0.92363 0.92069 0.91227 0.92515 0.78134 0.91161 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.98 37.16 0.37 -2.06 16 2 C 0.05 0.86 5.55 -3.82 -0.02 0.84 16 3 N -0.53 -11.20 3.83 -236.07 -0.91 -12.11 16 4 C 0.19 4.94 4.59 -4.98 -0.02 4.91 16 5 C -0.50 -14.01 8.61 -34.44 -0.30 -14.30 16 6 H 0.06 1.73 7.66 -52.48 -0.40 1.33 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 9 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.07 1.32 4.17 -3.82 -0.02 1.30 16 14 C -0.08 -1.20 2.14 -90.62 -0.19 -1.39 16 15 H 0.07 0.96 6.10 -51.93 -0.32 0.65 16 16 C -0.11 -1.58 5.09 -26.73 -0.14 -1.71 16 17 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 18 C -0.15 -1.64 5.55 -26.73 -0.15 -1.79 16 19 C 0.11 1.26 3.47 -26.76 -0.09 1.17 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 O -0.57 -6.75 13.32 -35.23 -0.47 -7.22 16 22 C -0.11 -1.50 4.85 -26.76 -0.13 -1.63 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 1.18 6.52 -51.93 -0.34 0.84 16 26 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 27 H 0.06 0.94 5.87 -51.93 -0.30 0.63 16 28 H -0.01 -0.38 8.00 -51.93 -0.42 -0.80 16 29 H 0.04 0.99 6.24 -51.92 -0.32 0.66 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.08 1.70 7.32 -51.93 -0.38 1.32 16 32 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.08 1.37 7.75 -51.93 -0.40 0.97 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.37 2.68 9.08 45.56 0.41 3.09 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 317.13 15.07 4.78 4.78 Total: -1.00 -30.26 317.13 -8.49 -38.75 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.67 Total: -0.03 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -0.94 Total: -14.77 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.17 Total: -38.31 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.47 Total: -7.22 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.26 -8.49 -38.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379823918.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.477 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds