Wall clock time and date at job start Mon Mar 30 2020 03:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46903 * 109.46743 * 2 1 4 4 C 1.46897 * 110.99819 * 297.32944 * 3 2 1 5 5 C 1.50696 * 109.47275 * 292.72260 * 4 3 2 6 6 H 1.08004 * 120.00315 * 355.02864 * 5 4 3 7 7 C 1.37884 * 120.00338 * 175.02622 * 5 4 3 8 8 N 1.31520 * 119.99295 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00307 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47523 * 59.99664 * 9 7 5 11 11 H 1.48507 * 109.47242 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46928 * 299.99816 * 9 7 5 13 13 C 1.46897 * 110.99859 * 61.28434 * 3 2 1 14 14 C 1.52999 * 109.47182 * 66.04708 * 13 3 2 15 15 H 1.09003 * 109.46823 * 304.99728 * 14 13 3 16 16 C 1.53001 * 109.47158 * 64.99482 * 14 13 3 17 17 C 1.53008 * 109.46971 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.46976 * 300.00333 * 17 16 14 19 19 C 1.53001 * 109.47543 * 60.00017 * 18 17 16 20 20 H 1.09003 * 109.47053 * 59.99595 * 19 18 17 21 21 O 1.42894 * 109.47144 * 179.97438 * 19 18 17 22 22 C 1.53001 * 109.46878 * 184.99870 * 14 13 3 23 23 H 1.08991 * 109.47077 * 299.43943 * 1 2 3 24 24 H 1.08998 * 109.46950 * 59.44365 * 1 2 3 25 25 H 1.09003 * 109.46827 * 179.43535 * 1 2 3 26 26 H 1.09004 * 109.46917 * 240.00090 * 2 1 3 27 27 H 1.08998 * 109.46825 * 120.00035 * 2 1 3 28 28 H 1.08993 * 109.47728 * 52.72708 * 4 3 2 29 29 H 1.09004 * 109.47034 * 172.72793 * 4 3 2 30 30 H 0.96998 * 119.99297 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47159 * 306.03973 * 13 3 2 32 32 H 1.09001 * 109.47008 * 186.04409 * 13 3 2 33 33 H 1.08996 * 109.47161 * 299.99969 * 16 14 13 34 34 H 1.09003 * 109.47053 * 60.00386 * 16 14 13 35 35 H 1.08998 * 109.46820 * 59.99827 * 17 16 14 36 36 H 1.08994 * 109.47091 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47277 * 299.99749 * 18 17 16 38 38 H 1.09007 * 109.46713 * 179.97438 * 18 17 16 39 39 H 0.96701 * 114.00396 * 299.99711 * 21 19 18 40 40 H 1.08994 * 109.47575 * 59.99681 * 22 14 13 41 41 H 1.08998 * 109.46933 * 299.99255 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6015 2.0912 -1.2183 5 6 2.3002 1.4917 -2.4113 6 1 3.0459 0.7231 -2.2706 7 6 1.9877 1.9243 -3.6827 8 7 1.0800 2.8605 -3.8541 9 14 2.8533 1.1807 -5.1615 10 1 2.5917 -0.2804 -5.2053 11 1 2.3411 1.8122 -6.4042 12 1 4.3149 1.4187 -5.0508 13 6 1.5738 2.1009 1.2028 14 6 2.2318 1.4823 2.4378 15 1 2.0205 0.4133 2.4649 16 6 3.7447 1.7017 2.3735 17 6 4.4026 1.0836 3.6089 18 6 3.8441 1.7466 4.8696 19 6 2.3313 1.5272 4.9339 20 1 2.1200 0.4582 4.9615 21 8 1.8099 2.1460 6.1117 22 6 1.6735 2.1448 3.6988 23 1 -0.3633 0.5051 0.8949 24 1 -0.3633 0.5224 -0.8849 25 1 -0.3633 -1.0277 -0.0101 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5230 1.9943 -1.3425 29 1 1.8644 3.1458 -1.1354 30 1 0.8599 3.1645 -4.7485 31 1 0.4902 2.0234 1.2910 32 1 1.8580 3.1505 1.1271 33 1 4.1424 1.2297 1.4751 34 1 3.9560 2.7707 2.3463 35 1 4.1912 0.0146 3.6365 36 1 5.4803 1.2394 3.5629 37 1 4.0554 2.8156 4.8420 38 1 4.3125 1.3059 5.7497 39 1 2.1832 1.8022 6.9348 40 1 0.5957 1.9886 3.7446 41 1 1.8848 3.2137 3.6716 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379823919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:50 Heat of formation + Delta-G solvation = -73.800617 kcal Electronic energy + Delta-G solvation = -18281.034798 eV Core-core repulsion = 15580.727738 eV Total energy + Delta-G solvation = -2700.307061 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.25594 -37.23478 -35.31019 -32.63628 -31.36548 -29.59452 -29.09426 -26.84161 -24.50725 -23.19091 -22.18896 -21.34340 -19.74647 -18.91909 -17.08531 -16.16689 -15.37503 -15.10207 -14.92271 -14.51668 -14.38240 -13.77314 -13.49434 -13.10044 -12.85243 -12.46107 -12.17633 -11.88454 -11.60802 -11.48678 -11.32303 -11.13616 -10.96637 -10.75666 -10.72916 -10.51637 -10.40789 -10.22302 -10.11626 -9.94496 -9.67830 -9.55435 -9.13166 -8.39038 -7.09352 -5.98870 -3.99677 3.35050 3.39168 3.42024 4.09609 4.45895 4.72686 4.77074 5.06085 5.11095 5.25271 5.30778 5.36322 5.52980 5.58635 5.62929 5.65763 5.83982 5.90826 5.94269 6.03488 6.09258 6.11574 6.20812 6.25297 6.28875 6.36471 6.44730 6.56383 6.73011 6.76904 6.78672 6.96360 7.37550 7.50087 7.56226 7.85840 8.16642 8.27179 8.62265 9.08511 9.64226 11.11751 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.039165 B = 0.005115 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.760561 B = 5472.287432 C = 5695.891184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.060 3.940 3 N -0.532 5.532 4 C 0.188 3.812 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.056 3.944 14 C -0.078 4.078 15 H 0.069 0.931 16 C -0.108 4.108 17 C -0.118 4.118 18 C -0.149 4.149 19 C 0.106 3.894 20 H 0.052 0.948 21 O -0.571 6.571 22 C -0.106 4.106 23 H 0.044 0.956 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.002 0.998 29 H 0.023 0.977 30 H 0.261 0.739 31 H 0.028 0.972 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.373 0.627 40 H 0.064 0.936 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.971 -4.101 16.261 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.069 4.069 3 N -0.255 5.255 4 C 0.063 3.937 5 C -0.542 4.542 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.072 4.072 14 C -0.097 4.097 15 H 0.087 0.913 16 C -0.145 4.145 17 C -0.155 4.155 18 C -0.187 4.187 19 C 0.047 3.953 20 H 0.070 0.930 21 O -0.376 6.376 22 C -0.145 4.145 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.020 0.980 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.219 0.781 40 H 0.083 0.917 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.057 -3.657 15.654 16.364 hybrid contribution -0.196 -0.595 -0.482 0.790 sum 2.861 -4.252 15.173 16.015 Atomic orbital electron populations 1.22389 0.99655 1.00822 1.01952 1.21980 0.91943 0.91830 1.01109 1.62305 1.58975 1.01738 1.02497 1.19764 0.94764 0.93676 0.85466 1.21123 1.21591 1.21325 0.90173 0.92030 1.24981 0.95348 0.95299 0.98994 1.69954 1.32299 1.29387 1.22345 0.86595 0.79942 0.79238 0.81818 1.20355 1.21446 1.20227 1.22077 0.96542 0.98127 0.90483 1.21103 0.95677 0.99946 0.92937 0.91259 1.21504 0.94412 1.00924 0.97658 1.21522 0.99728 0.99773 0.94510 1.22264 0.96051 1.01910 0.98484 1.21831 0.92268 0.95728 0.85449 0.93041 1.86529 1.68696 1.66351 1.16042 1.21510 0.99934 1.00787 0.92224 0.93664 0.91391 0.93617 0.90303 0.92980 0.98034 0.95897 0.92974 0.95440 0.91667 0.89882 0.92366 0.92245 0.92026 0.91284 0.92459 0.78077 0.91725 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.44 9.26 37.16 0.34 -3.09 16 2 C 0.06 1.14 5.68 -3.82 -0.02 1.12 16 3 N -0.53 -11.12 4.15 -236.07 -0.98 -12.10 16 4 C 0.19 4.85 4.54 -4.98 -0.02 4.82 16 5 C -0.50 -14.02 8.39 -34.44 -0.29 -14.31 16 6 H 0.06 1.70 7.39 -52.48 -0.39 1.31 16 7 C 0.05 1.55 5.46 -17.81 -0.10 1.45 16 8 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 9 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.06 1.00 4.13 -3.83 -0.02 0.99 16 14 C -0.08 -1.12 2.11 -90.62 -0.19 -1.31 16 15 H 0.07 1.00 6.31 -51.93 -0.33 0.68 16 16 C -0.11 -1.51 5.09 -26.73 -0.14 -1.64 16 17 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 18 C -0.15 -1.55 5.54 -26.73 -0.15 -1.70 16 19 C 0.11 1.20 3.47 -26.75 -0.09 1.11 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 O -0.57 -6.46 13.32 -35.23 -0.47 -6.93 16 22 C -0.11 -1.41 4.85 -26.75 -0.13 -1.54 16 23 H 0.04 0.76 6.33 -51.93 -0.33 0.44 16 24 H 0.07 1.44 6.29 -51.93 -0.33 1.11 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 1.65 6.98 -51.93 -0.36 1.29 16 27 H 0.05 0.87 6.31 -51.93 -0.33 0.54 16 28 H 0.00 0.05 6.02 -51.93 -0.31 -0.26 16 29 H 0.02 0.64 7.91 -51.93 -0.41 0.23 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 31 H 0.03 0.50 6.05 -51.93 -0.31 0.18 16 32 H 0.06 1.21 7.92 -51.93 -0.41 0.80 16 33 H 0.08 1.33 7.75 -51.93 -0.40 0.93 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.37 2.52 9.08 45.56 0.41 2.93 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 311.98 15.07 4.70 4.70 Total: -1.00 -29.90 311.98 -8.43 -38.33 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.44 Total: 0.96 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -0.96 Total: -15.58 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.24 Total: -38.13 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.47 Total: -6.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.90 -8.43 -38.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379823919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.470 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds