Wall clock time and date at job start Mon Mar 30 2020 03:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46903 * 109.46743 * 2 1 4 4 C 1.46897 * 110.99819 * 297.32944 * 3 2 1 5 5 C 1.50696 * 109.47275 * 292.72260 * 4 3 2 6 6 H 1.08004 * 120.00315 * 355.02864 * 5 4 3 7 7 C 1.37884 * 120.00338 * 175.02622 * 5 4 3 8 8 N 1.31520 * 119.99295 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00307 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47523 * 59.99664 * 9 7 5 11 11 H 1.48507 * 109.47242 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46928 * 299.99816 * 9 7 5 13 13 C 1.46897 * 110.99859 * 61.28434 * 3 2 1 14 14 C 1.52999 * 109.47182 * 66.04708 * 13 3 2 15 15 H 1.09003 * 109.46823 * 304.99728 * 14 13 3 16 16 C 1.53001 * 109.47158 * 64.99482 * 14 13 3 17 17 C 1.53008 * 109.46971 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.46976 * 300.00333 * 17 16 14 19 19 C 1.53001 * 109.47543 * 60.00017 * 18 17 16 20 20 H 1.09003 * 109.47053 * 59.99595 * 19 18 17 21 21 O 1.42894 * 109.47144 * 179.97438 * 19 18 17 22 22 C 1.53001 * 109.46878 * 184.99870 * 14 13 3 23 23 H 1.08991 * 109.47077 * 299.43943 * 1 2 3 24 24 H 1.08998 * 109.46950 * 59.44365 * 1 2 3 25 25 H 1.09003 * 109.46827 * 179.43535 * 1 2 3 26 26 H 1.09004 * 109.46917 * 240.00090 * 2 1 3 27 27 H 1.08998 * 109.46825 * 120.00035 * 2 1 3 28 28 H 1.08993 * 109.47728 * 52.72708 * 4 3 2 29 29 H 1.09004 * 109.47034 * 172.72793 * 4 3 2 30 30 H 0.96998 * 119.99297 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47159 * 306.03973 * 13 3 2 32 32 H 1.09001 * 109.47008 * 186.04409 * 13 3 2 33 33 H 1.08996 * 109.47161 * 299.99969 * 16 14 13 34 34 H 1.09003 * 109.47053 * 60.00386 * 16 14 13 35 35 H 1.08998 * 109.46820 * 59.99827 * 17 16 14 36 36 H 1.08994 * 109.47091 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47277 * 299.99749 * 18 17 16 38 38 H 1.09007 * 109.46713 * 179.97438 * 18 17 16 39 39 H 0.96701 * 114.00396 * 299.99711 * 21 19 18 40 40 H 1.08994 * 109.47575 * 59.99681 * 22 14 13 41 41 H 1.08998 * 109.46933 * 299.99255 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6015 2.0912 -1.2183 5 6 2.3002 1.4917 -2.4113 6 1 3.0459 0.7231 -2.2706 7 6 1.9877 1.9243 -3.6827 8 7 1.0800 2.8605 -3.8541 9 14 2.8533 1.1807 -5.1615 10 1 2.5917 -0.2804 -5.2053 11 1 2.3411 1.8122 -6.4042 12 1 4.3149 1.4187 -5.0508 13 6 1.5738 2.1009 1.2028 14 6 2.2318 1.4823 2.4378 15 1 2.0205 0.4133 2.4649 16 6 3.7447 1.7017 2.3735 17 6 4.4026 1.0836 3.6089 18 6 3.8441 1.7466 4.8696 19 6 2.3313 1.5272 4.9339 20 1 2.1200 0.4582 4.9615 21 8 1.8099 2.1460 6.1117 22 6 1.6735 2.1448 3.6988 23 1 -0.3633 0.5051 0.8949 24 1 -0.3633 0.5224 -0.8849 25 1 -0.3633 -1.0277 -0.0101 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5230 1.9943 -1.3425 29 1 1.8644 3.1458 -1.1354 30 1 0.8599 3.1645 -4.7485 31 1 0.4902 2.0234 1.2910 32 1 1.8580 3.1505 1.1271 33 1 4.1424 1.2297 1.4751 34 1 3.9560 2.7707 2.3463 35 1 4.1912 0.0146 3.6365 36 1 5.4803 1.2394 3.5629 37 1 4.0554 2.8156 4.8420 38 1 4.3125 1.3059 5.7497 39 1 2.1832 1.8022 6.9348 40 1 0.5957 1.9886 3.7446 41 1 1.8848 3.2137 3.6716 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379823919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:48 Heat of formation + Delta-G solvation = -94.348199 kcal Electronic energy + Delta-G solvation = -18281.925808 eV Core-core repulsion = 15580.727738 eV Total energy + Delta-G solvation = -2701.198071 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.39060 -38.63786 -36.39721 -34.70454 -32.55432 -31.03161 -30.41804 -28.60306 -26.01169 -25.01585 -23.18276 -22.67122 -20.90392 -20.37793 -18.35589 -17.97136 -16.85332 -16.57626 -16.25596 -16.19071 -15.39996 -14.98199 -14.84764 -14.52549 -14.42851 -13.76612 -13.45993 -13.29661 -13.12982 -13.04089 -12.72911 -12.62253 -12.51636 -12.48176 -12.14841 -11.95516 -11.83995 -11.66894 -11.40832 -11.30032 -11.13396 -10.91184 -10.61489 -10.56308 -8.84880 -8.16899 -6.26473 1.41389 1.44407 1.52156 2.41818 3.14180 3.15562 3.57499 3.74412 3.84132 4.12516 4.17876 4.28064 4.35319 4.39972 4.46874 4.56680 4.60907 4.67089 4.69580 4.76171 4.79275 4.88337 5.02499 5.04313 5.11036 5.20019 5.23341 5.27380 5.30704 5.38786 5.41475 5.53369 5.58015 5.63838 5.70868 6.11746 6.42550 6.72263 6.91056 6.95834 7.43007 8.93507 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.039165 B = 0.005115 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.760561 B = 5472.287432 C = 5695.891184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.060 3.940 3 N -0.535 5.535 4 C 0.203 3.797 5 C -0.517 4.517 6 H 0.062 0.938 7 C 0.001 3.999 8 N -0.937 5.937 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.057 3.943 14 C -0.064 4.064 15 H 0.078 0.922 16 C -0.106 4.106 17 C -0.111 4.111 18 C -0.143 4.143 19 C 0.110 3.890 20 H 0.065 0.935 21 O -0.587 6.587 22 C -0.105 4.105 23 H 0.056 0.944 24 H 0.029 0.971 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.086 0.914 28 H -0.023 1.023 29 H -0.009 1.009 30 H 0.263 0.737 31 H 0.025 0.975 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.394 0.606 40 H 0.060 0.940 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 -5.898 17.791 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.068 4.068 3 N -0.258 5.258 4 C 0.077 3.923 5 C -0.555 4.555 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.578 5.578 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.194 1.194 13 C -0.071 4.071 14 C -0.083 4.083 15 H 0.096 0.904 16 C -0.144 4.144 17 C -0.149 4.149 18 C -0.181 4.181 19 C 0.052 3.948 20 H 0.083 0.917 21 O -0.396 6.396 22 C -0.143 4.143 23 H 0.075 0.925 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.104 0.896 28 H -0.005 1.005 29 H 0.009 0.991 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.244 0.756 40 H 0.079 0.921 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.068 -5.470 17.223 18.523 hybrid contribution -0.537 -0.001 -0.893 1.042 sum 3.530 -5.471 16.330 17.580 Atomic orbital electron populations 1.22280 0.98849 1.02117 1.00641 1.22025 0.92605 0.90452 1.01703 1.62210 1.59258 1.02609 1.01721 1.19403 0.93033 0.92336 0.87519 1.21426 1.21626 1.21294 0.91192 0.92008 1.25888 0.95981 0.95607 1.02179 1.70093 1.33786 1.30777 1.23101 0.85481 0.78870 0.78743 0.77795 1.19200 1.21056 1.19403 1.22136 0.96756 0.97420 0.90786 1.20963 0.95706 1.00011 0.91638 0.90393 1.21451 0.94176 1.00311 0.98447 1.21467 1.00016 1.00148 0.93263 1.22215 0.95439 1.01452 0.99002 1.21723 0.92487 0.96006 0.84625 0.91716 1.86477 1.69206 1.66856 1.17021 1.21445 0.99882 1.00164 0.92849 0.92461 0.95182 0.90910 0.92348 0.89604 1.00507 0.99100 0.92873 0.95664 0.93280 0.92133 0.93519 0.91140 0.91092 0.92263 0.89730 0.75636 0.92118 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.45 9.26 71.98 0.67 -5.78 16 2 C 0.06 2.26 5.68 86.31 0.49 2.75 16 3 N -0.53 -22.86 4.15 -900.80 -3.73 -26.59 16 4 C 0.20 10.96 4.54 85.56 0.39 11.35 16 5 C -0.52 -29.51 8.39 25.60 0.21 -29.29 16 6 H 0.06 3.45 7.39 -2.91 -0.02 3.43 16 7 C 0.00 0.06 5.46 84.66 0.46 0.52 16 8 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 9 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.06 2.08 4.13 86.30 0.36 2.44 16 14 C -0.06 -1.79 2.11 -10.79 -0.02 -1.81 16 15 H 0.08 2.06 6.31 -2.39 -0.02 2.04 16 16 C -0.11 -2.88 5.09 30.60 0.16 -2.73 16 17 C -0.11 -2.21 5.92 30.60 0.18 -2.03 16 18 C -0.14 -2.53 5.54 30.59 0.17 -2.36 16 19 C 0.11 2.19 3.47 30.58 0.11 2.30 16 20 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 21 O -0.59 -11.64 13.32 -148.98 -1.98 -13.62 16 22 C -0.11 -2.65 4.85 30.58 0.15 -2.50 16 23 H 0.06 1.89 6.33 -2.39 -0.02 1.87 16 24 H 0.03 1.29 6.29 -2.39 -0.02 1.27 16 25 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 26 H 0.06 2.44 6.98 -2.38 -0.02 2.42 16 27 H 0.09 2.66 6.31 -2.39 -0.02 2.65 16 28 H -0.02 -1.32 6.02 -2.39 -0.01 -1.33 16 29 H -0.01 -0.54 7.91 -2.39 -0.02 -0.56 16 30 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.03 0.93 6.05 -2.39 -0.01 0.91 16 32 H 0.05 1.91 7.92 -2.39 -0.02 1.89 16 33 H 0.06 1.92 7.75 -2.39 -0.02 1.90 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.39 3.98 9.08 -74.06 -0.67 3.31 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -65.84 311.98 0.23 -65.62 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.32 Total: 11.96 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 3.32 Total: -27.15 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -3.45 Total: -83.55 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -1.98 Total: -13.62 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.84 0.23 -65.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379823919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.733 kcal (2) G-P(sol) polarization free energy of solvation -65.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds