Wall clock time and date at job start Mon Mar 30 2020 03:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.46638 * 2 1 4 4 C 1.46907 * 110.99956 * 196.03306 * 3 2 1 5 5 C 1.50698 * 109.47049 * 66.04435 * 4 3 2 6 6 H 1.08000 * 119.99889 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99626 * 180.27370 * 5 4 3 8 8 N 1.31508 * 120.00284 * 359.73176 * 7 5 4 9 9 Si 1.86797 * 119.99621 * 179.72462 * 7 5 4 10 10 H 1.48499 * 109.47130 * 60.00578 * 9 7 5 11 11 H 1.48507 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47455 * 300.00429 * 9 7 5 13 13 C 1.46906 * 111.00283 * 72.08018 * 3 2 1 14 14 C 1.52995 * 109.47397 * 199.70559 * 13 3 2 15 15 H 1.09006 * 109.47035 * 304.83436 * 14 13 3 16 16 C 1.52997 * 109.47351 * 64.83031 * 14 13 3 17 17 C 1.53002 * 109.47419 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46827 * 300.00222 * 17 16 14 19 19 C 1.52997 * 109.47302 * 59.99706 * 18 17 16 20 20 H 1.09004 * 109.46933 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.46750 * 60.00067 * 19 18 17 22 22 C 1.52995 * 109.47351 * 300.00207 * 19 18 17 23 23 H 1.09002 * 109.47039 * 181.42768 * 1 2 3 24 24 H 1.09001 * 109.47242 * 301.42668 * 1 2 3 25 25 H 1.09004 * 109.47725 * 61.42797 * 1 2 3 26 26 H 1.08993 * 109.47171 * 240.00300 * 2 1 3 27 27 H 1.08996 * 109.47360 * 119.99965 * 2 1 3 28 28 H 1.09007 * 109.46786 * 306.04722 * 4 3 2 29 29 H 1.08996 * 109.47304 * 186.05125 * 4 3 2 30 30 H 0.97002 * 120.00560 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.46772 * 319.70566 * 13 3 2 32 32 H 1.09001 * 109.46876 * 79.70371 * 13 3 2 33 33 H 1.09007 * 109.47383 * 300.00415 * 16 14 13 34 34 H 1.08996 * 109.47058 * 59.99769 * 16 14 13 35 35 H 1.08996 * 109.47100 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.46971 * 59.99965 * 17 16 14 37 37 H 1.09006 * 109.47237 * 300.00018 * 18 17 16 38 38 H 1.09001 * 109.47206 * 180.02562 * 18 17 16 39 39 H 0.96699 * 114.00448 * 60.00271 * 21 19 18 40 40 H 1.09006 * 109.47035 * 299.99595 * 22 19 18 41 41 H 1.09000 * 109.47345 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 3.4378 1.4421 -0.3788 5 6 3.5924 1.0071 -1.8133 6 1 2.7240 0.7177 -2.3864 7 6 4.8432 0.9738 -2.3925 8 7 5.9006 1.3267 -1.6947 9 14 5.0358 0.4273 -4.1683 10 1 4.2555 1.3306 -5.0516 11 1 6.4702 0.4793 -4.5494 12 1 4.5351 -0.9630 -4.3155 13 6 1.7971 2.0221 1.3049 14 6 1.8473 3.5428 1.1452 15 1 2.7907 3.8284 0.6799 16 6 0.6843 4.0017 0.2633 17 6 0.7348 5.5225 0.1031 18 6 0.6240 6.1841 1.4782 19 6 1.7870 5.7252 2.3601 20 1 1.7078 6.1962 3.3400 21 8 3.0239 6.0991 1.7499 22 6 1.7365 4.2045 2.5203 23 1 -0.3633 -1.0274 0.0256 24 1 -0.3634 0.5358 0.8769 25 1 -0.3635 0.4915 -0.9025 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8899 28 1 4.0131 0.7780 0.2663 29 1 3.8028 2.4630 -0.2672 30 1 6.7806 1.3029 -2.1020 31 1 0.8205 1.7292 1.6904 32 1 2.5730 1.7041 2.0014 33 1 0.7634 3.5307 -0.7165 34 1 -0.2591 3.7161 0.7285 35 1 -0.0940 5.8494 -0.5248 36 1 1.6783 5.8076 -0.3623 37 1 -0.3194 5.8989 1.9438 38 1 0.6596 7.2675 1.3641 39 1 3.1250 7.0516 1.6172 40 1 0.7931 3.9193 2.9858 41 1 2.5653 3.8775 3.1482 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379823920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:52 Heat of formation + Delta-G solvation = -96.236328 kcal Electronic energy + Delta-G solvation = -18530.063870 eV Core-core repulsion = 15828.783924 eV Total energy + Delta-G solvation = -2701.279946 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.34014 -38.45872 -35.94203 -34.73335 -32.68052 -31.34756 -30.62734 -28.64780 -25.97153 -24.28356 -23.35430 -22.56843 -21.04310 -20.52446 -18.56430 -17.68569 -16.92388 -16.52574 -16.21086 -15.64905 -15.35823 -15.32629 -14.95073 -14.41886 -14.22018 -13.91987 -13.54383 -13.23561 -12.99890 -12.85250 -12.73288 -12.63361 -12.56889 -12.34059 -12.24781 -11.99690 -11.82971 -11.59088 -11.56450 -11.23181 -11.08834 -10.77027 -10.59195 -10.45999 -8.93668 -8.19495 -6.29963 1.38563 1.42774 1.50568 2.39830 3.12013 3.31383 3.49688 3.84796 3.92058 4.03663 4.22016 4.30544 4.39017 4.53508 4.55916 4.59276 4.64268 4.71952 4.74590 4.79325 4.86685 4.96858 5.05557 5.09894 5.12695 5.16152 5.19479 5.32684 5.39325 5.40584 5.44667 5.48278 5.64151 5.69321 5.73617 6.09767 6.42656 6.71457 6.87373 7.02751 7.39465 8.91684 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021784 B = 0.006954 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.049214 B = 4025.676434 C = 4650.008134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.052 3.948 3 N -0.534 5.534 4 C 0.214 3.786 5 C -0.522 4.522 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.970 3.030 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.059 3.941 14 C -0.070 4.070 15 H 0.032 0.968 16 C -0.094 4.094 17 C -0.115 4.115 18 C -0.140 4.140 19 C 0.103 3.897 20 H 0.075 0.925 21 O -0.588 6.588 22 C -0.107 4.107 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.014 0.986 28 H -0.051 1.051 29 H 0.000 1.000 30 H 0.263 0.737 31 H 0.089 0.911 32 H 0.003 0.997 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.387 0.613 40 H 0.099 0.901 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.375 7.803 7.944 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.077 4.077 3 N -0.258 5.258 4 C 0.087 3.913 5 C -0.560 4.560 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.794 3.206 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.190 1.190 13 C -0.070 4.070 14 C -0.089 4.089 15 H 0.050 0.950 16 C -0.132 4.132 17 C -0.153 4.153 18 C -0.178 4.178 19 C 0.045 3.955 20 H 0.093 0.907 21 O -0.396 6.396 22 C -0.144 4.144 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.032 0.968 28 H -0.033 1.033 29 H 0.018 0.982 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.236 0.764 40 H 0.117 0.883 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.371 7.427 7.598 17.079 hybrid contribution 1.418 -0.246 -0.284 1.467 sum -11.953 7.181 7.315 15.747 Atomic orbital electron populations 1.21687 0.92932 1.01895 1.02121 1.22028 0.97008 0.89224 0.99399 1.62067 1.19085 1.16945 1.27719 1.19300 0.83681 0.93792 0.94522 1.21447 0.93024 1.43971 0.97552 0.91858 1.25965 0.95425 0.95537 1.02977 1.70107 0.99156 1.49549 1.38883 0.85429 0.77023 0.79158 0.78960 1.19301 1.20810 1.19039 1.22235 0.99910 0.95232 0.89576 1.20896 0.98682 0.93108 0.96204 0.94971 1.21324 0.97130 0.95354 0.99384 1.21437 1.00984 0.95195 0.97661 1.22191 0.99241 1.00717 0.95609 1.21892 0.83561 0.94759 0.95325 0.90742 1.86625 1.39059 1.29821 1.84123 1.21614 1.02526 0.94147 0.96161 0.91042 0.91980 0.92728 0.92420 0.96815 1.03311 0.98193 0.92787 0.89235 0.97917 0.93648 0.90998 0.91205 0.94149 0.89400 0.90227 0.76426 0.88293 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 10.00 71.98 0.72 -3.13 16 2 C 0.05 2.08 5.52 86.30 0.48 2.55 16 3 N -0.53 -24.20 3.83 -900.79 -3.45 -27.65 16 4 C 0.21 12.21 4.55 85.56 0.39 12.59 16 5 C -0.52 -31.07 8.28 25.60 0.21 -30.85 16 6 H 0.06 3.67 7.26 -2.91 -0.02 3.65 16 7 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 8 N -0.94 -59.27 13.29 21.45 0.28 -58.99 16 9 Si 0.97 46.00 29.54 68.60 2.03 48.02 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 C 0.06 2.23 4.22 86.30 0.36 2.59 16 14 C -0.07 -2.49 2.10 -10.80 -0.02 -2.51 16 15 H 0.03 1.48 6.20 -2.38 -0.01 1.47 16 16 C -0.09 -2.95 5.09 30.59 0.16 -2.80 16 17 C -0.12 -3.05 5.78 30.59 0.18 -2.87 16 18 C -0.14 -2.73 5.64 30.59 0.17 -2.56 16 19 C 0.10 2.38 3.77 30.59 0.12 2.49 16 20 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 21 O -0.59 -16.80 11.97 -148.98 -1.78 -18.58 16 22 C -0.11 -2.92 4.95 30.59 0.15 -2.77 16 23 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.06 1.64 6.50 -2.39 -0.02 1.63 16 25 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.06 2.60 6.59 -2.39 -0.02 2.58 16 27 H 0.01 0.54 8.05 -2.39 -0.02 0.52 16 28 H -0.05 -3.19 8.12 -2.38 -0.02 -3.21 16 29 H 0.00 0.00 6.57 -2.39 -0.02 -0.02 16 30 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.09 2.81 6.23 -2.38 -0.01 2.79 16 32 H 0.00 0.11 8.00 -2.39 -0.02 0.09 16 33 H 0.04 1.72 7.75 -2.38 -0.02 1.70 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.04 1.28 7.68 -2.39 -0.02 1.26 16 37 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.39 7.32 9.08 -74.06 -0.67 6.65 16 40 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -71.73 314.91 0.76 -70.97 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.31 Total: 13.12 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 3.37 Total: -26.89 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -3.16 Total: -86.64 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -1.78 Total: -18.58 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -71.73 0.76 -70.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379823920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.270 kcal (2) G-P(sol) polarization free energy of solvation -71.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds