Wall clock time and date at job start Mon Mar 30 2020 03:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46905 * 109.47149 * 2 1 4 4 C 1.46901 * 110.99966 * 62.59960 * 3 2 1 5 5 C 1.50701 * 109.47155 * 66.04714 * 4 3 2 6 6 H 1.08003 * 119.99864 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99871 * 180.02562 * 5 4 3 8 8 N 1.31521 * 120.00081 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00192 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47253 * 270.00287 * 9 7 5 11 11 H 1.48501 * 109.46663 * 30.00472 * 9 7 5 12 12 H 1.48506 * 109.46937 * 150.00356 * 9 7 5 13 13 C 1.46901 * 110.99716 * 298.64651 * 3 2 1 14 14 C 1.53002 * 109.47281 * 288.29122 * 13 3 2 15 15 H 1.09006 * 109.46760 * 57.01399 * 14 13 3 16 16 C 1.53002 * 109.47049 * 297.01757 * 14 13 3 17 17 C 1.52995 * 109.47133 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47046 * 59.99975 * 17 16 14 19 19 C 1.53002 * 109.47175 * 299.99999 * 18 17 16 20 20 H 1.09003 * 109.46609 * 180.02562 * 19 18 17 21 21 O 1.42894 * 109.46875 * 299.99771 * 19 18 17 22 22 C 1.52995 * 109.47133 * 60.00054 * 19 18 17 23 23 H 1.08992 * 109.47222 * 61.40380 * 1 2 3 24 24 H 1.08999 * 109.46814 * 181.40578 * 1 2 3 25 25 H 1.09001 * 109.46991 * 301.40227 * 1 2 3 26 26 H 1.09000 * 109.47446 * 240.00103 * 2 1 3 27 27 H 1.08997 * 109.47471 * 119.99954 * 2 1 3 28 28 H 1.08998 * 109.46695 * 306.04666 * 4 3 2 29 29 H 1.09003 * 109.47064 * 186.05196 * 4 3 2 30 30 H 0.97003 * 119.99996 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47516 * 48.29230 * 13 3 2 32 32 H 1.09003 * 109.46941 * 168.29036 * 13 3 2 33 33 H 1.09005 * 109.47040 * 300.00020 * 16 14 13 34 34 H 1.09004 * 109.47068 * 59.99373 * 16 14 13 35 35 H 1.09005 * 109.47362 * 300.00054 * 17 16 14 36 36 H 1.09005 * 109.47262 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.47331 * 179.97438 * 18 17 16 38 38 H 1.09006 * 109.47425 * 60.00126 * 18 17 16 39 39 H 0.96697 * 114.00592 * 300.00088 * 21 19 18 40 40 H 1.08997 * 109.47432 * 180.02562 * 22 19 18 41 41 H 1.09005 * 109.47362 * 59.99946 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6001 2.0917 1.2176 5 6 2.2743 1.4731 2.4150 6 1 2.9468 0.6382 2.2846 7 6 2.0317 1.9724 3.6771 8 7 2.6204 1.4329 4.7221 9 14 0.8679 3.4161 3.9027 10 1 1.6324 4.6863 3.8175 11 1 -0.1668 3.3887 2.8378 12 1 0.2129 3.3208 5.2320 13 6 1.5753 2.1005 -1.2036 14 6 2.3400 1.5756 -2.4205 15 1 2.1888 0.4997 -2.5082 16 6 3.8320 1.8689 -2.2505 17 6 4.5968 1.3435 -3.4670 18 6 4.0818 2.0351 -4.7309 19 6 2.5897 1.7419 -4.9008 20 1 2.2230 2.2343 -5.8015 21 8 2.3916 0.3314 -5.0153 22 6 1.8250 2.2673 -3.6843 23 1 -0.3633 0.4918 -0.9022 24 1 -0.3633 -1.0274 0.0252 25 1 -0.3633 0.5355 0.8772 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.5186 2.0134 1.3287 29 1 1.8826 3.1419 1.1437 30 1 2.4500 1.7844 5.6100 31 1 0.5071 1.9392 -1.3485 32 1 1.7689 3.1666 -1.0848 33 1 3.9831 2.9448 -2.1627 34 1 4.1990 1.3758 -1.3503 35 1 4.4456 0.2675 -3.5544 36 1 5.6597 1.5528 -3.3462 37 1 4.6269 1.6612 -5.5976 38 1 4.2330 3.1111 -4.6436 39 1 2.8487 -0.0703 -5.7668 40 1 0.7621 2.0580 -3.8051 41 1 1.9762 3.3433 -3.5969 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379823922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:57 Heat of formation + Delta-G solvation = -66.971306 kcal Electronic energy + Delta-G solvation = -18491.299181 eV Core-core repulsion = 15791.288261 eV Total energy + Delta-G solvation = -2700.010919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.34460 -37.27914 -34.90130 -32.53085 -31.37602 -29.81155 -29.41064 -27.24886 -24.60792 -22.93800 -22.29366 -21.09536 -19.60254 -18.85594 -16.78869 -16.69149 -15.63603 -15.10622 -15.03206 -14.41884 -14.25145 -13.71003 -13.54458 -12.87084 -12.80000 -12.41266 -12.26671 -12.18720 -11.68872 -11.59624 -11.46141 -11.26235 -11.04775 -10.71680 -10.60446 -10.59644 -10.45704 -10.22498 -9.96906 -9.68626 -9.63778 -9.51816 -9.17016 -8.51517 -7.17578 -6.00329 -3.96356 3.30836 3.38226 3.40412 4.23271 4.45953 4.69394 4.78107 4.87781 5.05367 5.28232 5.31914 5.42956 5.53914 5.62037 5.64843 5.69656 5.83023 5.88375 5.91212 6.03098 6.06545 6.11249 6.12949 6.21711 6.36533 6.41970 6.46207 6.58266 6.61060 6.83812 6.87217 6.91992 7.04768 7.17755 7.61439 7.68309 8.02953 8.18766 8.73979 9.09237 9.62319 11.13019 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035462 B = 0.005707 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.396508 B = 4904.914194 C = 5033.228228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.059 3.941 3 N -0.521 5.521 4 C 0.157 3.843 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.269 1.269 12 H -0.287 1.287 13 C 0.050 3.950 14 C -0.074 4.074 15 H 0.077 0.923 16 C -0.105 4.105 17 C -0.115 4.115 18 C -0.151 4.151 19 C 0.108 3.892 20 H 0.047 0.953 21 O -0.561 6.561 22 C -0.108 4.108 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.084 0.916 28 H -0.007 1.007 29 H 0.020 0.980 30 H 0.262 0.738 31 H 0.028 0.972 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.371 0.629 40 H 0.063 0.937 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.405 0.955 -19.355 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.069 4.069 3 N -0.244 5.244 4 C 0.031 3.969 5 C -0.541 4.541 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.193 1.193 12 H -0.213 1.213 13 C -0.079 4.079 14 C -0.093 4.093 15 H 0.095 0.905 16 C -0.142 4.142 17 C -0.153 4.153 18 C -0.189 4.189 19 C 0.049 3.951 20 H 0.065 0.935 21 O -0.365 6.365 22 C -0.146 4.146 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.011 0.989 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.217 0.783 40 H 0.082 0.918 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.234 1.077 -18.602 18.635 hybrid contribution -1.173 0.870 -0.245 1.481 sum -1.407 1.947 -18.847 19.000 Atomic orbital electron populations 1.22381 0.99755 1.01143 1.01459 1.22008 0.91803 0.91271 1.01807 1.62125 1.58867 1.01809 1.01599 1.20225 0.94175 0.94054 0.88437 1.21049 1.26781 1.17445 0.88862 0.90182 1.24890 0.95820 0.96691 0.95975 1.69900 1.43744 1.41897 0.98674 0.86899 0.81896 0.83659 0.77515 1.20248 1.19341 1.21315 1.22204 0.96367 0.98073 0.91212 1.21014 0.95236 1.00756 0.92259 0.90475 1.21456 0.94333 1.00550 0.97907 1.21474 0.98891 1.00520 0.94408 1.22251 0.96385 1.01434 0.98800 1.21761 0.94316 0.81615 0.97433 0.93496 1.86575 1.75342 1.21472 1.53156 1.21587 0.99453 0.99644 0.93920 0.93622 0.93241 0.91882 0.92511 0.89772 0.98933 0.96224 0.92787 0.95369 0.92052 0.92930 0.89960 0.91694 0.92616 0.92463 0.91335 0.78319 0.91834 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.41 9.28 37.16 0.34 -3.07 16 2 C 0.06 1.17 5.73 -3.82 -0.02 1.15 16 3 N -0.52 -10.90 4.03 -236.06 -0.95 -11.85 16 4 C 0.16 3.85 3.58 -4.97 -0.02 3.83 16 5 C -0.50 -14.36 9.03 -34.44 -0.31 -14.67 16 6 H 0.08 2.49 7.36 -52.48 -0.39 2.10 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 9 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 C 0.05 0.87 4.23 -3.82 -0.02 0.86 16 14 C -0.07 -1.10 2.03 -90.62 -0.18 -1.28 16 15 H 0.08 1.26 6.16 -51.93 -0.32 0.94 16 16 C -0.10 -1.54 5.07 -26.73 -0.14 -1.67 16 17 C -0.12 -1.39 5.78 -26.73 -0.15 -1.54 16 18 C -0.15 -1.50 5.64 -26.73 -0.15 -1.65 16 19 C 0.11 1.13 3.77 -26.73 -0.10 1.03 16 20 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 21 O -0.56 -6.25 11.97 -35.23 -0.42 -6.67 16 22 C -0.11 -1.33 4.95 -26.73 -0.13 -1.46 16 23 H 0.04 0.76 6.27 -51.93 -0.33 0.44 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 1.27 6.27 -51.93 -0.33 0.95 16 26 H 0.06 1.02 6.59 -51.93 -0.34 0.67 16 27 H 0.08 1.86 6.79 -51.93 -0.35 1.50 16 28 H -0.01 -0.17 5.11 -51.93 -0.27 -0.44 16 29 H 0.02 0.49 7.29 -51.93 -0.38 0.11 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.03 0.49 5.84 -51.93 -0.30 0.18 16 32 H 0.06 1.07 7.82 -51.93 -0.41 0.66 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.42 7.69 -51.93 -0.40 1.02 16 35 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.37 2.57 9.08 45.56 0.41 2.98 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 306.14 15.07 4.61 4.61 Total: -1.00 -30.99 306.14 -7.97 -38.96 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.34 Total: 1.59 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -0.98 Total: -16.62 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.18 Total: -38.98 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.42 Total: -6.67 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.99 -7.97 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379823922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.016 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds