Wall clock time and date at job start Mon Mar 30 2020 03:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46905 * 109.47149 * 2 1 4 4 C 1.46901 * 110.99966 * 62.59960 * 3 2 1 5 5 C 1.50701 * 109.47155 * 66.04714 * 4 3 2 6 6 H 1.08003 * 119.99864 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99871 * 180.02562 * 5 4 3 8 8 N 1.31521 * 120.00081 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00192 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47253 * 270.00287 * 9 7 5 11 11 H 1.48501 * 109.46663 * 30.00472 * 9 7 5 12 12 H 1.48506 * 109.46937 * 150.00356 * 9 7 5 13 13 C 1.46901 * 110.99716 * 298.64651 * 3 2 1 14 14 C 1.53002 * 109.47281 * 288.29122 * 13 3 2 15 15 H 1.09006 * 109.46760 * 57.01399 * 14 13 3 16 16 C 1.53002 * 109.47049 * 297.01757 * 14 13 3 17 17 C 1.52995 * 109.47133 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47046 * 59.99975 * 17 16 14 19 19 C 1.53002 * 109.47175 * 299.99999 * 18 17 16 20 20 H 1.09003 * 109.46609 * 180.02562 * 19 18 17 21 21 O 1.42894 * 109.46875 * 299.99771 * 19 18 17 22 22 C 1.52995 * 109.47133 * 60.00054 * 19 18 17 23 23 H 1.08992 * 109.47222 * 61.40380 * 1 2 3 24 24 H 1.08999 * 109.46814 * 181.40578 * 1 2 3 25 25 H 1.09001 * 109.46991 * 301.40227 * 1 2 3 26 26 H 1.09000 * 109.47446 * 240.00103 * 2 1 3 27 27 H 1.08997 * 109.47471 * 119.99954 * 2 1 3 28 28 H 1.08998 * 109.46695 * 306.04666 * 4 3 2 29 29 H 1.09003 * 109.47064 * 186.05196 * 4 3 2 30 30 H 0.97003 * 119.99996 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47516 * 48.29230 * 13 3 2 32 32 H 1.09003 * 109.46941 * 168.29036 * 13 3 2 33 33 H 1.09005 * 109.47040 * 300.00020 * 16 14 13 34 34 H 1.09004 * 109.47068 * 59.99373 * 16 14 13 35 35 H 1.09005 * 109.47362 * 300.00054 * 17 16 14 36 36 H 1.09005 * 109.47262 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.47331 * 179.97438 * 18 17 16 38 38 H 1.09006 * 109.47425 * 60.00126 * 18 17 16 39 39 H 0.96697 * 114.00592 * 300.00088 * 21 19 18 40 40 H 1.08997 * 109.47432 * 180.02562 * 22 19 18 41 41 H 1.09005 * 109.47362 * 59.99946 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6001 2.0917 1.2176 5 6 2.2743 1.4731 2.4150 6 1 2.9468 0.6382 2.2846 7 6 2.0317 1.9724 3.6771 8 7 2.6204 1.4329 4.7221 9 14 0.8679 3.4161 3.9027 10 1 1.6324 4.6863 3.8175 11 1 -0.1668 3.3887 2.8378 12 1 0.2129 3.3208 5.2320 13 6 1.5753 2.1005 -1.2036 14 6 2.3400 1.5756 -2.4205 15 1 2.1888 0.4997 -2.5082 16 6 3.8320 1.8689 -2.2505 17 6 4.5968 1.3435 -3.4670 18 6 4.0818 2.0351 -4.7309 19 6 2.5897 1.7419 -4.9008 20 1 2.2230 2.2343 -5.8015 21 8 2.3916 0.3314 -5.0153 22 6 1.8250 2.2673 -3.6843 23 1 -0.3633 0.4918 -0.9022 24 1 -0.3633 -1.0274 0.0252 25 1 -0.3633 0.5355 0.8772 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.5186 2.0134 1.3287 29 1 1.8826 3.1419 1.1437 30 1 2.4500 1.7844 5.6100 31 1 0.5071 1.9392 -1.3485 32 1 1.7689 3.1666 -1.0848 33 1 3.9831 2.9448 -2.1627 34 1 4.1990 1.3758 -1.3503 35 1 4.4456 0.2675 -3.5544 36 1 5.6597 1.5528 -3.3462 37 1 4.6269 1.6612 -5.5976 38 1 4.2330 3.1111 -4.6436 39 1 2.8487 -0.0703 -5.7668 40 1 0.7621 2.0580 -3.8051 41 1 1.9762 3.3433 -3.5969 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379823922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:56 Heat of formation + Delta-G solvation = -89.060477 kcal Electronic energy + Delta-G solvation = -18492.257039 eV Core-core repulsion = 15791.288261 eV Total energy + Delta-G solvation = -2700.968778 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.41977 -38.70547 -35.95524 -34.65322 -32.54288 -31.27658 -30.70513 -28.94065 -26.03524 -24.72117 -23.27794 -22.44592 -20.74642 -20.31995 -18.87500 -17.63115 -16.86874 -16.59328 -16.34921 -16.21939 -15.35817 -15.12458 -14.90376 -14.45505 -14.25222 -13.97713 -13.47302 -13.32732 -13.15464 -13.06153 -12.80412 -12.59388 -12.44403 -12.31372 -12.23716 -11.88381 -11.81755 -11.64842 -11.50962 -11.41355 -11.04284 -10.77085 -10.75610 -10.44711 -8.84746 -8.26647 -6.28625 1.33551 1.34770 1.45471 2.34649 3.06699 3.29244 3.50561 3.82468 3.92252 4.04787 4.20447 4.28027 4.40498 4.43564 4.51903 4.54812 4.65548 4.67858 4.71384 4.75472 4.80440 4.86112 4.95366 5.03251 5.10323 5.12513 5.16985 5.25678 5.35560 5.36507 5.42625 5.48082 5.58627 5.65562 5.70005 6.06065 6.46105 6.73881 6.77901 7.03983 7.34642 8.90237 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035462 B = 0.005707 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.396508 B = 4904.914194 C = 5033.228228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.062 3.938 3 N -0.535 5.535 4 C 0.169 3.831 5 C -0.509 4.509 6 H 0.036 0.964 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.945 3.055 10 H -0.265 1.265 11 H -0.252 1.252 12 H -0.282 1.282 13 C 0.051 3.949 14 C -0.064 4.064 15 H 0.061 0.939 16 C -0.104 4.104 17 C -0.112 4.112 18 C -0.145 4.145 19 C 0.109 3.891 20 H 0.072 0.928 21 O -0.581 6.581 22 C -0.108 4.108 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.039 0.961 26 H 0.075 0.925 27 H 0.048 0.952 28 H -0.006 1.006 29 H 0.021 0.979 30 H 0.266 0.734 31 H 0.035 0.965 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.389 0.611 40 H 0.063 0.937 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 2.411 -21.989 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.066 4.066 3 N -0.258 5.258 4 C 0.041 3.959 5 C -0.547 4.547 6 H 0.054 0.946 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.768 3.232 10 H -0.190 1.190 11 H -0.176 1.176 12 H -0.208 1.208 13 C -0.077 4.077 14 C -0.083 4.083 15 H 0.080 0.920 16 C -0.141 4.141 17 C -0.149 4.149 18 C -0.183 4.183 19 C 0.051 3.949 20 H 0.089 0.911 21 O -0.389 6.389 22 C -0.146 4.146 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.012 0.988 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.238 0.762 40 H 0.081 0.919 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.378 2.521 -21.277 21.470 hybrid contribution -0.729 0.306 0.555 0.966 sum -2.107 2.826 -20.722 21.019 Atomic orbital electron populations 1.22274 0.98038 1.02340 1.01133 1.21921 0.93182 0.90551 1.00912 1.62025 1.59691 1.02365 1.01745 1.19970 0.93527 0.93900 0.88455 1.21260 1.26153 1.16363 0.90961 0.94596 1.25814 0.97736 0.99924 0.95456 1.70058 1.45753 1.43952 0.99368 0.85754 0.79776 0.79707 0.77944 1.19047 1.17629 1.20776 1.22310 0.97118 0.97822 0.90461 1.20896 0.94945 0.99944 0.92503 0.92040 1.21395 0.94715 1.00236 0.97791 1.21416 0.98877 1.00184 0.94448 1.22220 0.96253 1.01643 0.98134 1.21767 0.94254 0.81605 0.97322 0.91062 1.86530 1.75948 1.21916 1.54538 1.21600 0.99641 1.00168 0.93182 0.91803 0.91277 0.94194 0.90693 0.93348 0.98809 0.96049 0.92548 0.94682 0.91925 0.92846 0.93626 0.92499 0.92158 0.90130 0.90610 0.76223 0.91865 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.32 9.28 71.98 0.67 -5.66 16 2 C 0.06 2.50 5.73 86.30 0.49 2.99 16 3 N -0.54 -22.66 4.03 -900.77 -3.63 -26.28 16 4 C 0.17 8.29 3.58 85.56 0.31 8.59 16 5 C -0.51 -30.13 9.03 25.60 0.23 -29.90 16 6 H 0.04 2.38 7.36 -2.91 -0.02 2.36 16 7 C 0.01 0.45 5.47 84.65 0.46 0.91 16 8 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 9 Si 0.94 45.01 27.47 68.60 1.88 46.89 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.25 -11.29 6.54 99.48 0.65 -10.63 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 13 C 0.05 1.71 4.23 86.30 0.37 2.08 16 14 C -0.06 -1.82 2.03 -10.79 -0.02 -1.84 16 15 H 0.06 1.95 6.16 -2.38 -0.01 1.94 16 16 C -0.10 -2.99 5.07 30.59 0.16 -2.84 16 17 C -0.11 -2.52 5.78 30.59 0.18 -2.34 16 18 C -0.14 -2.39 5.64 30.59 0.17 -2.21 16 19 C 0.11 1.92 3.77 30.59 0.12 2.03 16 20 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 21 O -0.58 -11.30 11.97 -148.98 -1.78 -13.08 16 22 C -0.11 -2.36 4.95 30.59 0.15 -2.21 16 23 H 0.06 2.01 6.27 -2.39 -0.01 1.99 16 24 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.04 1.58 6.27 -2.39 -0.01 1.57 16 26 H 0.07 2.70 6.59 -2.39 -0.02 2.68 16 27 H 0.05 2.26 6.79 -2.39 -0.02 2.24 16 28 H -0.01 -0.27 5.11 -2.39 -0.01 -0.29 16 29 H 0.02 1.05 7.29 -2.39 -0.02 1.03 16 30 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 31 H 0.04 1.14 5.84 -2.39 -0.01 1.13 16 32 H 0.06 2.09 7.82 -2.39 -0.02 2.07 16 33 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.04 1.63 7.69 -2.38 -0.02 1.61 16 35 H 0.06 1.37 7.68 -2.38 -0.02 1.35 16 36 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.39 4.18 9.08 -74.06 -0.67 3.50 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -68.80 306.14 0.32 -68.48 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.27 Total: 14.65 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 3.28 Total: -30.39 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -3.33 Total: -86.55 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -1.78 Total: -13.08 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal Total: -68.80 0.32 -68.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379823922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.579 kcal (2) G-P(sol) polarization free energy of solvation -68.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds