Wall clock time and date at job start Mon Mar 30 2020 03:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99683 * 2 1 4 4 C 1.52998 * 109.47115 * 293.94958 * 3 2 1 5 5 C 1.53004 * 109.46895 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46863 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47003 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99785 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99655 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00340 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99544 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47160 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47089 * 119.99753 * 11 9 7 14 14 H 1.48498 * 109.47116 * 239.99613 * 11 9 7 15 15 C 1.46900 * 110.99925 * 123.95343 * 2 1 3 16 16 C 1.52994 * 109.47402 * 66.04469 * 15 2 1 17 17 C 1.53782 * 113.61734 * 184.99959 * 16 15 2 18 18 C 1.53781 * 87.08260 * 220.02231 * 17 16 15 19 19 O 1.42905 * 113.61505 * 270.80084 * 18 17 16 20 20 C 1.53786 * 87.17350 * 25.39213 * 18 17 16 21 21 H 1.08993 * 109.47562 * 296.04480 * 1 2 3 22 22 H 1.09004 * 109.46892 * 56.05257 * 1 2 3 23 23 H 1.09003 * 109.46829 * 176.04559 * 1 2 3 24 24 H 1.08998 * 109.47254 * 53.95317 * 3 2 1 25 25 H 1.09002 * 109.46816 * 173.95154 * 3 2 1 26 26 H 1.08998 * 109.47353 * 300.00299 * 4 3 2 27 27 H 1.09002 * 109.47118 * 60.00381 * 4 3 2 28 28 H 1.09002 * 109.47295 * 299.99738 * 5 4 3 29 29 H 1.08993 * 109.47228 * 60.00300 * 5 4 3 30 30 H 1.09002 * 109.46698 * 299.99794 * 6 5 4 31 31 H 1.08993 * 109.47206 * 59.99976 * 6 5 4 32 32 H 0.97001 * 119.99764 * 180.02562 * 10 9 7 33 33 H 1.09005 * 109.46682 * 306.05073 * 15 2 1 34 34 H 1.08998 * 109.47034 * 186.05119 * 15 2 1 35 35 H 1.09002 * 112.84929 * 316.20035 * 16 15 2 36 36 H 1.09001 * 113.61250 * 105.47049 * 17 16 15 37 37 H 1.08997 * 113.61225 * 334.56890 * 17 16 15 38 38 H 1.09002 * 113.61445 * 139.98212 * 18 17 16 39 39 H 0.96696 * 114.00145 * 178.47219 * 19 18 17 40 40 H 1.08993 * 113.61491 * 89.15923 * 20 18 17 41 41 H 1.09000 * 113.61138 * 220.06261 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1803 3.4856 -1.3185 6 6 1.8158 4.1718 -2.6366 7 6 2.3569 5.5783 -2.6371 8 1 2.9054 5.9461 -1.7826 9 6 2.1506 6.3958 -3.7280 10 7 1.4822 5.9481 -4.7683 11 14 2.8207 8.1395 -3.7283 12 1 3.5305 8.3973 -2.4497 13 1 3.7663 8.3062 -4.8611 14 1 1.6985 9.1010 -3.8747 15 6 1.9955 -0.7660 1.1376 16 6 1.6315 -2.2426 0.9704 17 6 2.0318 -3.1155 2.1715 18 6 2.4516 -4.1877 1.1521 19 8 1.3956 -5.0814 0.7937 20 6 2.6572 -3.0424 0.1466 21 1 -0.3634 0.4512 0.9232 22 1 -0.3633 0.5739 -0.8525 23 1 -0.3633 -1.0253 -0.0709 24 1 1.5610 1.9273 0.8309 25 1 3.0797 1.3444 0.1083 26 1 2.0658 1.5015 -2.1492 27 1 0.5472 2.0844 -1.4266 28 1 1.7462 4.0418 -0.4876 29 1 3.2645 3.4582 -1.2104 30 1 2.2496 3.6157 -3.4677 31 1 0.7315 4.1992 -2.7442 32 1 1.3374 6.5232 -5.5360 33 1 1.5610 -0.3872 2.0628 34 1 3.0797 -0.6610 1.1757 35 1 0.6011 -2.3905 0.6472 36 1 1.1889 -3.4126 2.7956 37 1 2.8641 -2.7109 2.7473 38 1 3.3729 -4.7060 1.4180 39 1 1.6472 -5.7435 0.1354 40 1 3.6608 -2.6177 0.1678 41 1 2.3184 -3.2805 -0.8616 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385308899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:11 Heat of formation + Delta-G solvation = -47.653848 kcal Electronic energy + Delta-G solvation = -17050.985279 eV Core-core repulsion = 14351.812027 eV Total energy + Delta-G solvation = -2699.173252 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.81080 -37.50779 -35.14134 -34.07499 -32.14617 -29.03534 -27.81161 -26.00428 -25.86440 -23.87659 -21.86909 -20.54265 -19.95912 -19.74582 -17.27665 -16.19414 -15.88995 -15.59604 -15.28553 -14.87900 -14.43184 -14.23612 -13.82431 -13.28661 -12.74663 -12.59351 -12.49036 -12.19246 -11.90087 -11.67408 -11.63687 -11.38931 -11.04786 -10.93301 -10.78726 -10.46532 -10.41803 -10.32839 -10.29778 -9.87608 -9.56685 -9.21309 -8.95525 -8.30656 -8.18834 -5.95450 -3.97468 3.33254 3.40444 3.44829 3.78673 3.92542 4.44216 4.49590 4.50427 4.60603 4.79029 5.14677 5.26390 5.35191 5.40012 5.44770 5.45835 5.48706 5.58723 5.62839 5.71407 5.75310 5.88268 5.94982 6.00948 6.05478 6.20805 6.25634 6.33660 6.57963 6.86779 7.02409 7.14091 7.19558 7.31386 7.34788 7.74481 7.90646 8.06156 8.49093 9.10380 9.66267 11.15962 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.062238 B = 0.003078 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.778478 B = 9095.038596 C = 9161.535273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.540 5.540 3 C 0.056 3.944 4 C -0.113 4.113 5 C -0.109 4.109 6 C 0.021 3.979 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.055 3.945 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.063 3.937 16 C -0.097 4.097 17 C -0.131 4.131 18 C 0.074 3.926 19 O -0.553 6.553 20 C -0.156 4.156 21 H 0.021 0.979 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.029 0.971 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.380 0.620 40 H 0.087 0.913 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.284 -19.729 12.562 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.264 5.264 3 C -0.071 4.071 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.016 4.016 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.146 4.146 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.066 4.066 16 C -0.116 4.116 17 C -0.169 4.169 18 C 0.015 3.985 19 O -0.359 6.359 20 C -0.194 4.194 21 H 0.040 0.960 22 H 0.093 0.907 23 H 0.083 0.917 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.227 0.773 40 H 0.106 0.894 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.055 -19.534 12.400 23.162 hybrid contribution 0.364 1.120 0.209 1.196 sum 1.418 -18.415 12.609 22.363 Atomic orbital electron populations 1.22474 0.87793 1.01765 1.00813 1.62005 1.07808 1.14371 1.42226 1.22244 0.99611 0.86966 0.98322 1.21670 1.00820 0.96801 0.95840 1.21600 0.99310 0.93019 1.00807 1.19092 0.96678 0.94644 0.91193 1.21337 1.34564 0.98037 1.01777 0.92741 1.25039 0.95395 0.98472 0.95682 1.69981 1.41131 1.36337 1.06124 0.86560 0.78735 0.84904 0.77946 1.19781 1.21031 1.21049 1.22148 0.99872 0.92860 0.91672 1.22524 1.00161 0.92943 0.95956 1.23081 1.02063 0.95234 0.96505 1.22753 0.89569 0.89529 0.96675 1.86450 1.38327 1.47248 1.63872 1.23618 0.99907 0.96843 0.99015 0.96013 0.90693 0.91660 0.95287 0.91205 0.91744 0.92569 0.93757 0.93516 0.96618 0.96754 0.93123 0.95085 0.90883 0.88691 0.90799 0.88912 0.91803 0.77274 0.89432 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.17 60.07 0.55 0.80 16 2 N -0.54 -7.26 4.76 -242.92 -1.16 -8.42 16 3 C 0.06 0.83 4.96 -3.83 -0.02 0.81 16 4 C -0.11 -2.02 5.15 -26.73 -0.14 -2.16 16 5 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 6 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 11 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.06 0.69 4.80 -3.83 -0.02 0.68 16 16 C -0.10 -0.97 3.64 -89.71 -0.33 -1.30 16 17 C -0.13 -1.11 7.48 -25.92 -0.19 -1.31 16 18 C 0.07 0.61 5.27 -25.92 -0.14 0.47 16 19 O -0.55 -4.92 13.59 -35.23 -0.48 -5.40 16 20 C -0.16 -1.43 7.48 -25.82 -0.19 -1.62 16 21 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 22 H 0.07 1.01 6.30 -51.93 -0.33 0.68 16 23 H 0.06 0.75 6.29 -51.93 -0.33 0.42 16 24 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 25 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.06 1.00 6.47 -51.93 -0.34 0.67 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.07 0.78 7.64 -51.93 -0.40 0.38 16 35 H 0.09 1.07 6.26 -51.93 -0.33 0.75 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.38 1.75 9.12 45.56 0.42 2.17 16 40 H 0.09 0.76 7.90 -51.93 -0.41 0.35 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 326.71 15.07 4.92 4.92 Total: -1.00 -32.01 326.71 -8.89 -40.90 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -6.73 Total: -2.65 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -1.16 Total: -19.57 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.42 Total: -35.23 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.48 Total: -5.40 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.01 -8.89 -40.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385308899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.754 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds