Wall clock time and date at job start Mon Mar 30 2020 03:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99683 * 2 1 4 4 C 1.52998 * 109.47115 * 293.94958 * 3 2 1 5 5 C 1.53004 * 109.46895 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46863 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47003 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99785 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99655 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00340 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99544 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47160 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47089 * 119.99753 * 11 9 7 14 14 H 1.48498 * 109.47116 * 239.99613 * 11 9 7 15 15 C 1.46900 * 110.99925 * 123.95343 * 2 1 3 16 16 C 1.52994 * 109.47402 * 66.04469 * 15 2 1 17 17 C 1.53782 * 113.61734 * 184.99959 * 16 15 2 18 18 C 1.53781 * 87.08260 * 220.02231 * 17 16 15 19 19 O 1.42905 * 113.61505 * 270.80084 * 18 17 16 20 20 C 1.53786 * 87.17350 * 25.39213 * 18 17 16 21 21 H 1.08993 * 109.47562 * 296.04480 * 1 2 3 22 22 H 1.09004 * 109.46892 * 56.05257 * 1 2 3 23 23 H 1.09003 * 109.46829 * 176.04559 * 1 2 3 24 24 H 1.08998 * 109.47254 * 53.95317 * 3 2 1 25 25 H 1.09002 * 109.46816 * 173.95154 * 3 2 1 26 26 H 1.08998 * 109.47353 * 300.00299 * 4 3 2 27 27 H 1.09002 * 109.47118 * 60.00381 * 4 3 2 28 28 H 1.09002 * 109.47295 * 299.99738 * 5 4 3 29 29 H 1.08993 * 109.47228 * 60.00300 * 5 4 3 30 30 H 1.09002 * 109.46698 * 299.99794 * 6 5 4 31 31 H 1.08993 * 109.47206 * 59.99976 * 6 5 4 32 32 H 0.97001 * 119.99764 * 180.02562 * 10 9 7 33 33 H 1.09005 * 109.46682 * 306.05073 * 15 2 1 34 34 H 1.08998 * 109.47034 * 186.05119 * 15 2 1 35 35 H 1.09002 * 112.84929 * 316.20035 * 16 15 2 36 36 H 1.09001 * 113.61250 * 105.47049 * 17 16 15 37 37 H 1.08997 * 113.61225 * 334.56890 * 17 16 15 38 38 H 1.09002 * 113.61445 * 139.98212 * 18 17 16 39 39 H 0.96696 * 114.00145 * 178.47219 * 19 18 17 40 40 H 1.08993 * 113.61491 * 89.15923 * 20 18 17 41 41 H 1.09000 * 113.61138 * 220.06261 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1803 3.4856 -1.3185 6 6 1.8158 4.1718 -2.6366 7 6 2.3569 5.5783 -2.6371 8 1 2.9054 5.9461 -1.7826 9 6 2.1506 6.3958 -3.7280 10 7 1.4822 5.9481 -4.7683 11 14 2.8207 8.1395 -3.7283 12 1 3.5305 8.3973 -2.4497 13 1 3.7663 8.3062 -4.8611 14 1 1.6985 9.1010 -3.8747 15 6 1.9955 -0.7660 1.1376 16 6 1.6315 -2.2426 0.9704 17 6 2.0318 -3.1155 2.1715 18 6 2.4516 -4.1877 1.1521 19 8 1.3956 -5.0814 0.7937 20 6 2.6572 -3.0424 0.1466 21 1 -0.3634 0.4512 0.9232 22 1 -0.3633 0.5739 -0.8525 23 1 -0.3633 -1.0253 -0.0709 24 1 1.5610 1.9273 0.8309 25 1 3.0797 1.3444 0.1083 26 1 2.0658 1.5015 -2.1492 27 1 0.5472 2.0844 -1.4266 28 1 1.7462 4.0418 -0.4876 29 1 3.2645 3.4582 -1.2104 30 1 2.2496 3.6157 -3.4677 31 1 0.7315 4.1992 -2.7442 32 1 1.3374 6.5232 -5.5360 33 1 1.5610 -0.3872 2.0628 34 1 3.0797 -0.6610 1.1757 35 1 0.6011 -2.3905 0.6472 36 1 1.1889 -3.4126 2.7956 37 1 2.8641 -2.7109 2.7473 38 1 3.3729 -4.7060 1.4180 39 1 1.6472 -5.7435 0.1354 40 1 3.6608 -2.6177 0.1678 41 1 2.3184 -3.2805 -0.8616 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385308899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:11 Heat of formation + Delta-G solvation = -69.691931 kcal Electronic energy + Delta-G solvation = -17051.940922 eV Core-core repulsion = 14351.812027 eV Total energy + Delta-G solvation = -2700.128895 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.54475 -38.56868 -36.34853 -35.48192 -34.05519 -30.64464 -28.82963 -27.44851 -26.59123 -25.41145 -23.12083 -21.83936 -21.56232 -20.45357 -18.43618 -17.92141 -16.87748 -16.70293 -16.50218 -16.10255 -15.80891 -15.56163 -14.81309 -14.47974 -14.13480 -13.92153 -13.67782 -13.29081 -13.25513 -13.11982 -12.86274 -12.70545 -12.51168 -12.30347 -12.23123 -11.94192 -11.73737 -11.66303 -11.33245 -11.25513 -11.03580 -10.96956 -10.56232 -10.50488 -9.22999 -8.20081 -6.31678 1.39434 1.40022 1.53593 2.40769 2.93314 3.12594 3.23476 3.73915 3.80768 3.85611 4.00438 4.12744 4.19120 4.38472 4.45930 4.54790 4.57164 4.64380 4.66133 4.76346 4.83969 4.86326 4.88181 4.93215 4.95237 5.07417 5.16327 5.23426 5.27835 5.33768 5.36873 5.52911 5.55883 5.77646 5.86831 6.12584 6.19992 6.26341 6.86143 6.91108 7.37728 8.92116 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.062238 B = 0.003078 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.778478 B = 9095.038596 C = 9161.535273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.551 5.551 3 C 0.066 3.934 4 C -0.103 4.103 5 C -0.096 4.096 6 C 0.023 3.977 7 C -0.544 4.544 8 H 0.060 0.940 9 C -0.004 4.004 10 N -0.935 5.935 11 Si 0.967 3.033 12 H -0.261 1.261 13 H -0.277 1.277 14 H -0.278 1.278 15 C 0.065 3.935 16 C -0.101 4.101 17 C -0.127 4.127 18 C 0.078 3.922 19 O -0.574 6.574 20 C -0.156 4.156 21 H 0.026 0.974 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.033 0.967 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.052 0.948 30 H -0.011 1.011 31 H -0.012 1.012 32 H 0.264 0.736 33 H 0.034 0.966 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.396 0.604 40 H 0.094 0.906 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.436 -19.830 14.021 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.275 5.275 3 C -0.062 4.062 4 C -0.141 4.141 5 C -0.134 4.134 6 C -0.014 4.014 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.201 4.201 10 N -0.576 5.576 11 Si 0.791 3.209 12 H -0.185 1.185 13 H -0.203 1.203 14 H -0.203 1.203 15 C -0.063 4.063 16 C -0.120 4.120 17 C -0.165 4.165 18 C 0.019 3.981 19 O -0.382 6.382 20 C -0.194 4.194 21 H 0.045 0.955 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.007 0.993 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.247 0.753 40 H 0.113 0.887 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.210 -19.662 13.866 24.161 hybrid contribution -0.034 1.100 -0.286 1.137 sum 2.176 -18.562 13.580 23.102 Atomic orbital electron populations 1.22454 0.87548 1.02261 1.00428 1.61964 1.08182 1.13557 1.43803 1.22042 1.00212 0.87700 0.96214 1.21495 1.00181 0.94905 0.97535 1.21402 0.99798 0.94578 0.97658 1.19018 0.94632 0.94447 0.93296 1.21776 1.34907 0.99250 1.02231 0.92149 1.26040 0.95506 1.03452 0.95133 1.70116 1.42237 1.38294 1.06905 0.85367 0.78202 0.78764 0.78518 1.18488 1.20271 1.20317 1.22202 1.00255 0.93024 0.90772 1.22489 0.99551 0.92537 0.97389 1.23112 1.02436 0.94897 0.96039 1.22772 0.90109 0.89404 0.95837 1.86408 1.39224 1.47919 1.64669 1.23626 0.99846 0.97353 0.98526 0.95517 0.92049 0.90630 0.94905 0.90294 0.92790 0.93106 0.93252 0.92887 0.99279 0.99385 0.92771 0.94751 0.90033 0.90300 0.91422 0.87163 0.89704 0.75345 0.88747 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.17 127.69 1.17 1.69 16 2 N -0.55 -14.19 4.76 -922.46 -4.39 -18.58 16 3 C 0.07 1.87 4.96 86.30 0.43 2.30 16 4 C -0.10 -3.67 5.15 30.60 0.16 -3.51 16 5 C -0.10 -4.08 5.15 30.60 0.16 -3.92 16 6 C 0.02 1.27 4.97 29.85 0.15 1.42 16 7 C -0.54 -31.92 9.11 25.60 0.23 -31.68 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 10 N -0.94 -58.40 13.29 21.45 0.28 -58.12 16 11 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 15 C 0.06 1.32 4.80 86.30 0.41 1.74 16 16 C -0.10 -1.88 3.64 -10.21 -0.04 -1.92 16 17 C -0.13 -1.90 7.48 31.12 0.23 -1.67 16 18 C 0.08 1.12 5.27 31.12 0.16 1.28 16 19 O -0.57 -9.36 13.59 -148.98 -2.02 -11.39 16 20 C -0.16 -2.61 7.48 31.18 0.23 -2.38 16 21 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 22 H 0.06 1.66 6.30 -2.39 -0.02 1.65 16 23 H 0.08 1.69 6.29 -2.39 -0.01 1.67 16 24 H 0.03 0.91 8.12 -2.39 -0.02 0.89 16 25 H 0.08 2.11 7.93 -2.39 -0.02 2.09 16 26 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.05 1.85 6.47 -2.39 -0.02 1.83 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 30 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 32 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.03 0.69 8.12 -2.38 -0.02 0.67 16 34 H 0.08 1.53 7.64 -2.39 -0.02 1.51 16 35 H 0.08 1.73 6.26 -2.39 -0.01 1.72 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 1.25 8.10 -2.39 -0.02 1.23 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.40 3.09 9.12 -74.06 -0.68 2.42 16 40 H 0.09 1.45 7.90 -2.39 -0.02 1.43 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -68.42 326.71 -0.04 -68.46 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.30 Total: 8.95 kcal Atomic # 6 Polarization: -40.18 SS G_CDS: 3.76 Total: -36.42 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -4.11 Total: -76.70 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -2.02 Total: -11.39 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -68.42 -0.04 -68.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385308899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.231 kcal (2) G-P(sol) polarization free energy of solvation -68.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds