Wall clock time and date at job start Mon Mar 30 2020 03:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 111.00173 * 2 1 4 4 C 1.53003 * 109.47132 * 293.95594 * 3 2 1 5 5 C 1.52998 * 109.46901 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46699 * 179.97438 * 5 4 3 7 7 H 1.07994 * 120.00233 * 0.02562 * 6 5 4 8 8 C 1.37887 * 119.99645 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00153 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99696 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.46774 * 90.00307 * 10 8 6 12 12 H 1.48498 * 109.47050 * 209.99679 * 10 8 6 13 13 H 1.48496 * 109.47456 * 330.00274 * 10 8 6 14 14 C 1.46901 * 111.00228 * 123.95489 * 2 1 3 15 15 H 1.08992 * 109.47407 * 186.04539 * 14 2 1 16 16 C 1.53002 * 109.46860 * 306.04482 * 14 2 1 17 17 C 1.52997 * 109.46817 * 179.97438 * 16 14 2 18 18 C 1.53005 * 109.47452 * 300.00239 * 17 16 14 19 19 H 1.09002 * 109.46935 * 300.00125 * 18 17 16 20 20 O 1.42900 * 109.47304 * 180.02562 * 18 17 16 21 21 C 1.52999 * 109.47159 * 59.99536 * 18 17 16 22 22 C 1.52997 * 109.47317 * 300.00546 * 21 18 17 23 23 H 1.09006 * 109.46785 * 296.04706 * 1 2 3 24 24 H 1.09005 * 109.47133 * 56.03949 * 1 2 3 25 25 H 1.08990 * 109.47113 * 176.04878 * 1 2 3 26 26 H 1.09006 * 109.46871 * 53.95458 * 3 2 1 27 27 H 1.09000 * 109.47257 * 173.95495 * 3 2 1 28 28 H 1.08993 * 109.47157 * 300.00062 * 4 3 2 29 29 H 1.09000 * 109.47130 * 59.99823 * 4 3 2 30 30 H 1.08993 * 109.47632 * 300.00220 * 5 4 3 31 31 H 1.09000 * 109.47006 * 60.00196 * 5 4 3 32 32 H 0.96996 * 120.00341 * 179.97438 * 9 8 6 33 33 H 1.08993 * 109.47662 * 299.99902 * 16 14 2 34 34 H 1.09002 * 109.47075 * 60.00407 * 16 14 2 35 35 H 1.09002 * 109.47153 * 60.00231 * 17 16 14 36 36 H 1.09001 * 109.47289 * 180.02562 * 17 16 14 37 37 H 0.96700 * 113.99696 * 179.97438 * 20 18 17 38 38 H 1.08996 * 109.46929 * 179.97438 * 21 18 17 39 39 H 1.09002 * 109.46716 * 60.00455 * 21 18 17 40 40 H 1.09002 * 109.47153 * 299.99641 * 22 21 18 41 41 H 1.09001 * 109.46832 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 -1.3183 5 6 2.1793 3.4861 -1.3179 6 6 1.8213 4.1615 -2.6166 7 1 1.2590 3.6257 -3.3669 8 6 2.2118 5.4638 -2.8469 9 7 2.8970 6.1161 -1.9334 10 14 1.7674 6.3013 -4.4564 11 1 0.4552 6.9820 -4.3143 12 1 2.8098 7.3023 -4.7978 13 1 1.6838 5.2856 -5.5364 14 6 1.9955 -0.7660 1.1376 15 1 3.0797 -0.6611 1.1756 16 6 1.3859 -0.2343 2.4363 17 6 1.9337 -1.0325 3.6210 18 6 1.5693 -2.5091 3.4534 19 1 0.4850 -2.6136 3.4152 20 8 2.0805 -3.2545 4.5603 21 6 2.1789 -3.0407 2.1547 22 6 1.6310 -2.2425 0.9700 23 1 -0.3633 0.4513 0.9234 24 1 -0.3634 0.5741 -0.8524 25 1 -0.3633 -1.0251 -0.0708 26 1 1.5612 1.9274 0.8310 27 1 3.0798 1.3444 0.1082 28 1 2.0658 1.5016 -2.1492 29 1 0.5472 2.0846 -1.4265 30 1 1.7448 4.0417 -0.4871 31 1 3.2636 3.4594 -1.2095 32 1 3.1720 7.0320 -2.0955 33 1 1.6451 0.8176 2.5555 34 1 0.3016 -0.3393 2.3983 35 1 3.0181 -0.9280 3.6592 36 1 1.4991 -0.6541 4.5462 37 1 1.8859 -4.2009 4.5205 38 1 1.9196 -4.0926 2.0356 39 1 3.2632 -2.9362 2.1929 40 1 0.5467 -2.3470 0.9318 41 1 2.0656 -2.6209 0.0448 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439272215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:40 Heat of formation + Delta-G solvation = -76.152949 kcal Electronic energy + Delta-G solvation = -17740.846035 eV Core-core repulsion = 15040.436970 eV Total energy + Delta-G solvation = -2700.409065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.75204 -37.36873 -34.87378 -33.30125 -31.26032 -30.98721 -28.35030 -27.13126 -25.08341 -23.20573 -22.40908 -21.00571 -19.87934 -19.41546 -17.45517 -16.29522 -15.97700 -15.39282 -14.78289 -14.67216 -14.38523 -14.18597 -13.82776 -13.27067 -13.09858 -12.46586 -12.33673 -12.16087 -11.89927 -11.76319 -11.56589 -11.40488 -11.09362 -11.04098 -10.75707 -10.67748 -10.50350 -10.44849 -10.26335 -9.99751 -9.55822 -9.28583 -9.01980 -8.31525 -7.96282 -5.96905 -3.98810 3.33884 3.39956 3.43863 3.87784 4.24153 4.49328 4.51401 4.55377 4.91661 5.00293 5.06317 5.23412 5.28786 5.36773 5.38619 5.40013 5.61046 5.62210 5.73209 5.82193 5.85799 5.89300 5.98062 6.00054 6.02689 6.12553 6.27668 6.30471 6.37818 6.74710 6.82669 7.16074 7.38974 7.41450 7.44470 7.72021 7.87348 8.03904 8.47447 9.08524 9.64987 11.14584 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.059079 B = 0.003791 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.826568 B = 7384.446283 C = 7610.462142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.536 5.536 3 C 0.055 3.945 4 C -0.105 4.105 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.082 3.918 15 H 0.081 0.919 16 C -0.152 4.152 17 C -0.107 4.107 18 C 0.104 3.896 19 H 0.052 0.948 20 O -0.571 6.571 21 C -0.149 4.149 22 C -0.107 4.107 23 H 0.026 0.974 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.030 0.970 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.013 0.987 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.375 0.625 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.650 -18.291 9.980 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.258 5.258 3 C -0.072 4.072 4 C -0.143 4.143 5 C -0.016 4.016 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.027 4.027 15 H 0.099 0.901 16 C -0.191 4.191 17 C -0.145 4.145 18 C 0.045 3.955 19 H 0.070 0.930 20 O -0.376 6.376 21 C -0.187 4.187 22 C -0.145 4.145 23 H 0.045 0.955 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.222 0.778 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.193 -17.744 9.735 20.489 hybrid contribution -0.697 0.461 -0.283 0.882 sum -3.890 -17.283 9.452 20.079 Atomic orbital electron populations 1.22490 0.88285 1.01363 1.01020 1.62288 1.07644 1.15159 1.40722 1.22315 0.99466 0.86391 0.99052 1.21655 1.00000 0.98143 0.94472 1.19072 0.96231 0.89380 0.96915 1.21261 1.34692 0.97586 1.02084 0.92697 1.25033 0.95247 0.97529 0.96734 1.69964 1.38370 1.11260 1.34039 0.86601 0.78053 0.79336 0.84060 1.20725 1.21253 1.19850 1.21776 0.99664 0.93227 0.88024 0.90088 1.22225 1.01249 1.00312 0.95311 1.21403 1.02053 0.92497 0.98557 1.21867 0.96363 0.92153 0.85073 0.92961 1.86520 1.81245 1.23606 1.46232 1.22247 1.01817 0.99474 0.95198 1.21507 1.01038 0.94146 0.97825 0.95531 0.90769 0.92047 0.95212 0.91388 0.92672 0.93470 0.96887 0.96641 0.93061 0.90928 0.91378 0.91171 0.91515 0.77802 0.91787 0.91026 0.91857 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.58 60.07 0.52 0.74 16 2 N -0.54 -7.95 4.71 -234.87 -1.11 -9.06 16 3 C 0.05 0.96 4.53 -3.82 -0.02 0.95 16 4 C -0.10 -2.21 5.08 -26.73 -0.14 -2.35 16 5 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 6 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 7 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 10 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.08 1.01 2.19 -67.71 -0.15 0.86 16 15 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 16 C -0.15 -1.75 4.45 -26.73 -0.12 -1.87 16 17 C -0.11 -1.14 5.57 -26.73 -0.15 -1.29 16 18 C 0.10 0.98 3.47 -26.73 -0.09 0.89 16 19 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 20 O -0.57 -5.47 13.32 -35.23 -0.47 -5.94 16 21 C -0.15 -1.31 5.55 -26.73 -0.15 -1.46 16 22 C -0.11 -1.10 5.13 -26.73 -0.14 -1.23 16 23 H 0.03 0.34 6.21 -51.93 -0.32 0.02 16 24 H 0.07 1.09 6.30 -51.93 -0.33 0.76 16 25 H 0.06 0.71 6.47 -51.93 -0.34 0.37 16 26 H 0.03 0.53 7.06 -51.93 -0.37 0.16 16 27 H 0.07 1.21 7.93 -51.93 -0.41 0.79 16 28 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.98 6.47 -51.93 -0.34 0.64 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.07 0.93 6.91 -51.93 -0.36 0.57 16 34 H 0.07 0.77 6.33 -51.93 -0.33 0.44 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.38 1.96 9.08 45.56 0.41 2.37 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.62 6.55 -51.93 -0.34 0.28 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 312.84 15.07 4.71 4.71 Total: -1.00 -31.24 312.84 -8.60 -39.84 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.47 Total: -1.81 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -0.98 Total: -18.07 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.37 Total: -35.66 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.47 Total: -5.94 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.24 -8.60 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439272215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.314 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds