Wall clock time and date at job start Mon Mar 30 2020 03:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 111.00173 * 2 1 4 4 C 1.53003 * 109.47132 * 293.95594 * 3 2 1 5 5 C 1.52998 * 109.46901 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46699 * 179.97438 * 5 4 3 7 7 H 1.07994 * 120.00233 * 0.02562 * 6 5 4 8 8 C 1.37887 * 119.99645 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00153 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99696 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.46774 * 90.00307 * 10 8 6 12 12 H 1.48498 * 109.47050 * 209.99679 * 10 8 6 13 13 H 1.48496 * 109.47456 * 330.00274 * 10 8 6 14 14 C 1.46901 * 111.00228 * 123.95489 * 2 1 3 15 15 H 1.08992 * 109.47407 * 186.04539 * 14 2 1 16 16 C 1.53002 * 109.46860 * 306.04482 * 14 2 1 17 17 C 1.52997 * 109.46817 * 179.97438 * 16 14 2 18 18 C 1.53005 * 109.47452 * 300.00239 * 17 16 14 19 19 H 1.09002 * 109.46935 * 300.00125 * 18 17 16 20 20 O 1.42900 * 109.47304 * 180.02562 * 18 17 16 21 21 C 1.52999 * 109.47159 * 59.99536 * 18 17 16 22 22 C 1.52997 * 109.47317 * 300.00546 * 21 18 17 23 23 H 1.09006 * 109.46785 * 296.04706 * 1 2 3 24 24 H 1.09005 * 109.47133 * 56.03949 * 1 2 3 25 25 H 1.08990 * 109.47113 * 176.04878 * 1 2 3 26 26 H 1.09006 * 109.46871 * 53.95458 * 3 2 1 27 27 H 1.09000 * 109.47257 * 173.95495 * 3 2 1 28 28 H 1.08993 * 109.47157 * 300.00062 * 4 3 2 29 29 H 1.09000 * 109.47130 * 59.99823 * 4 3 2 30 30 H 1.08993 * 109.47632 * 300.00220 * 5 4 3 31 31 H 1.09000 * 109.47006 * 60.00196 * 5 4 3 32 32 H 0.96996 * 120.00341 * 179.97438 * 9 8 6 33 33 H 1.08993 * 109.47662 * 299.99902 * 16 14 2 34 34 H 1.09002 * 109.47075 * 60.00407 * 16 14 2 35 35 H 1.09002 * 109.47153 * 60.00231 * 17 16 14 36 36 H 1.09001 * 109.47289 * 180.02562 * 17 16 14 37 37 H 0.96700 * 113.99696 * 179.97438 * 20 18 17 38 38 H 1.08996 * 109.46929 * 179.97438 * 21 18 17 39 39 H 1.09002 * 109.46716 * 60.00455 * 21 18 17 40 40 H 1.09002 * 109.47153 * 299.99641 * 22 21 18 41 41 H 1.09001 * 109.46832 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 -1.3183 5 6 2.1793 3.4861 -1.3179 6 6 1.8213 4.1615 -2.6166 7 1 1.2590 3.6257 -3.3669 8 6 2.2118 5.4638 -2.8469 9 7 2.8970 6.1161 -1.9334 10 14 1.7674 6.3013 -4.4564 11 1 0.4552 6.9820 -4.3143 12 1 2.8098 7.3023 -4.7978 13 1 1.6838 5.2856 -5.5364 14 6 1.9955 -0.7660 1.1376 15 1 3.0797 -0.6611 1.1756 16 6 1.3859 -0.2343 2.4363 17 6 1.9337 -1.0325 3.6210 18 6 1.5693 -2.5091 3.4534 19 1 0.4850 -2.6136 3.4152 20 8 2.0805 -3.2545 4.5603 21 6 2.1789 -3.0407 2.1547 22 6 1.6310 -2.2425 0.9700 23 1 -0.3633 0.4513 0.9234 24 1 -0.3634 0.5741 -0.8524 25 1 -0.3633 -1.0251 -0.0708 26 1 1.5612 1.9274 0.8310 27 1 3.0798 1.3444 0.1082 28 1 2.0658 1.5016 -2.1492 29 1 0.5472 2.0846 -1.4265 30 1 1.7448 4.0417 -0.4871 31 1 3.2636 3.4594 -1.2095 32 1 3.1720 7.0320 -2.0955 33 1 1.6451 0.8176 2.5555 34 1 0.3016 -0.3393 2.3983 35 1 3.0181 -0.9280 3.6592 36 1 1.4991 -0.6541 4.5462 37 1 1.8859 -4.2009 4.5205 38 1 1.9196 -4.0926 2.0356 39 1 3.2632 -2.9362 2.1929 40 1 0.5467 -2.3470 0.9318 41 1 2.0656 -2.6209 0.0448 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439272215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:36 Heat of formation + Delta-G solvation = -98.026052 kcal Electronic energy + Delta-G solvation = -17741.794524 eV Core-core repulsion = 15040.436970 eV Total energy + Delta-G solvation = -2701.357554 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -40.70208 -38.34072 -36.21869 -35.01910 -33.04147 -31.83675 -29.48131 -28.64456 -26.61864 -24.44138 -23.64230 -22.15509 -21.42117 -20.39628 -18.47613 -18.17299 -17.03167 -16.63779 -16.29730 -16.09969 -15.58688 -15.26451 -14.76687 -14.52463 -14.28516 -14.15927 -13.54390 -13.38361 -13.17166 -13.03578 -12.79712 -12.59814 -12.54651 -12.45877 -12.35822 -12.04381 -11.93635 -11.59464 -11.38324 -11.34055 -11.18687 -10.93983 -10.72509 -10.55132 -9.15059 -8.20303 -6.31522 1.39730 1.41422 1.52844 2.40850 2.93519 3.12656 3.36135 3.68637 3.74584 4.02244 4.16072 4.19747 4.26862 4.33578 4.35025 4.46104 4.51323 4.58772 4.66711 4.70630 4.78847 4.91008 4.92989 5.02432 5.06303 5.12160 5.13743 5.15544 5.17885 5.26520 5.39028 5.43104 5.52850 5.74516 5.85805 6.12453 6.24129 6.28786 6.85413 6.92047 7.37724 8.91712 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.059079 B = 0.003791 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.826568 B = 7384.446283 C = 7610.462142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.542 5.542 3 C 0.067 3.933 4 C -0.089 4.089 5 C 0.026 3.974 6 C -0.543 4.543 7 H 0.059 0.941 8 C -0.002 4.002 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.263 1.263 14 C 0.081 3.919 15 H 0.070 0.930 16 C -0.144 4.144 17 C -0.107 4.107 18 C 0.108 3.892 19 H 0.064 0.936 20 O -0.587 6.587 21 C -0.141 4.141 22 C -0.100 4.100 23 H 0.031 0.969 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.025 0.975 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.051 0.949 30 H -0.011 1.011 31 H -0.010 1.010 32 H 0.264 0.736 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.395 0.605 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 -19.882 9.522 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.264 5.264 3 C -0.061 4.061 4 C -0.127 4.127 5 C -0.012 4.012 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.791 3.209 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.187 1.187 14 C -0.028 4.028 15 H 0.088 0.912 16 C -0.183 4.183 17 C -0.145 4.145 18 C 0.049 3.951 19 H 0.082 0.918 20 O -0.396 6.396 21 C -0.180 4.180 22 C -0.138 4.138 23 H 0.049 0.951 24 H 0.078 0.922 25 H 0.105 0.895 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.007 0.993 31 H 0.008 0.992 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.245 0.755 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.333 -19.372 9.284 21.915 hybrid contribution -0.324 0.931 -0.083 0.989 sum -4.656 -18.441 9.201 21.128 Atomic orbital electron populations 1.22534 0.87182 1.02807 1.00633 1.62240 1.08683 1.13132 1.42349 1.22008 0.99174 0.88107 0.96762 1.21398 0.99809 0.95164 0.96320 1.18970 0.94581 0.92282 0.95358 1.21697 1.34986 0.98357 1.03054 0.92251 1.26010 0.94909 0.98301 1.00728 1.70098 1.39306 1.11759 1.36301 0.85427 0.78049 0.78216 0.79242 1.19673 1.20684 1.18712 1.21849 0.99034 0.94470 0.87431 0.91205 1.22118 1.01571 0.99330 0.95320 1.21373 1.01330 0.93855 0.97969 1.21791 0.96972 0.91049 0.85284 0.91795 1.86476 1.81476 1.25364 1.46245 1.22186 1.01127 1.00542 0.94104 1.21453 1.01694 0.92263 0.98413 0.95061 0.92160 0.89495 0.95646 0.92047 0.93120 0.92999 0.99255 0.99169 0.92761 0.92811 0.90632 0.92188 0.91626 0.75549 0.89367 0.91911 0.90826 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 8.58 127.69 1.10 1.50 16 2 N -0.54 -15.65 4.71 -897.01 -4.23 -19.88 16 3 C 0.07 2.41 4.53 86.30 0.39 2.80 16 4 C -0.09 -3.82 5.08 30.59 0.16 -3.66 16 5 C 0.03 1.40 4.97 29.85 0.15 1.55 16 6 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 7 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 8 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 9 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 10 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 14 C 0.08 1.90 2.19 44.92 0.10 2.00 16 15 H 0.07 1.81 7.93 -2.39 -0.02 1.79 16 16 C -0.14 -3.21 4.45 30.59 0.14 -3.07 16 17 C -0.11 -2.17 5.57 30.60 0.17 -2.00 16 18 C 0.11 1.77 3.47 30.60 0.11 1.87 16 19 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 20 O -0.59 -9.88 13.32 -148.98 -1.98 -11.87 16 21 C -0.14 -2.11 5.55 30.59 0.17 -1.94 16 22 C -0.10 -1.81 5.13 30.59 0.16 -1.65 16 23 H 0.03 0.76 6.21 -2.38 -0.01 0.75 16 24 H 0.06 1.69 6.30 -2.38 -0.02 1.68 16 25 H 0.09 1.76 6.47 -2.39 -0.02 1.74 16 26 H 0.03 0.92 7.06 -2.38 -0.02 0.91 16 27 H 0.06 2.25 7.93 -2.39 -0.02 2.23 16 28 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.05 2.16 6.47 -2.39 -0.02 2.15 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.05 1.39 6.91 -2.39 -0.02 1.37 16 34 H 0.08 1.57 6.33 -2.39 -0.02 1.55 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.39 2.99 9.08 -74.06 -0.67 2.32 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.20 6.55 -2.39 -0.02 1.18 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -67.18 312.84 -0.26 -67.44 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.32 Total: 8.78 kcal Atomic # 6 Polarization: -37.12 SS G_CDS: 3.32 Total: -33.80 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -3.94 Total: -77.56 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.98 Total: -11.87 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -67.18 -0.26 -67.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439272215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.584 kcal (2) G-P(sol) polarization free energy of solvation -67.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds