Wall clock time and date at job start Mon Mar 30 2020 05:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29452 * 1 3 3 Si 1.86801 * 119.99905 * 2 1 4 4 H 1.48496 * 109.47330 * 270.00328 * 3 2 1 5 5 H 1.48501 * 109.47163 * 30.00269 * 3 2 1 6 6 H 1.48506 * 109.47130 * 150.00236 * 3 2 1 7 7 C 1.46657 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00188 * 163.19930 * 7 2 1 9 9 C 1.39425 * 120.00015 * 343.47670 * 7 2 1 10 10 C 1.46836 * 120.66008 * 314.26229 * 9 7 2 11 11 N 1.37597 * 120.64713 * 359.97438 * 10 9 7 12 12 C 1.39311 * 118.70349 * 179.74336 * 10 9 7 13 13 Cl 1.73593 * 120.00145 * 180.24605 * 12 10 9 14 14 C 1.37814 * 119.99566 * 0.53730 * 12 10 9 15 15 C 1.39234 * 121.39465 * 359.71014 * 14 12 10 16 16 C 1.35855 * 121.35989 * 0.02562 * 15 14 12 17 17 N 1.48015 * 120.06775 * 180.02562 * 16 15 14 18 18 O 1.31700 * 119.99880 * 353.46117 * 17 16 15 19 19 O 1.31697 * 120.00048 * 173.46569 * 17 16 15 20 20 H 0.97005 * 119.99996 * 5.03899 * 1 2 3 21 21 H 0.97000 * 120.00049 * 356.76791 * 11 10 9 22 22 H 0.97001 * 120.00453 * 176.77506 * 11 10 9 23 23 H 1.07991 * 119.30280 * 179.68512 * 14 12 10 24 24 H 1.07999 * 119.31783 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2945 0.0000 0.0000 3 14 2.2285 1.6178 0.0000 4 1 2.4759 2.0465 -1.4000 5 1 1.4260 2.6527 0.7001 6 1 3.5261 1.4402 0.7000 7 6 2.0278 -1.2701 -0.0006 8 1 3.0732 -1.2900 -0.2709 9 6 1.3739 -2.4528 0.3423 10 6 0.4978 -2.5099 1.5193 11 7 0.3064 -1.3972 2.3059 12 6 -0.1397 -3.7112 1.8212 13 17 -1.1879 -3.8147 3.2011 14 6 0.0665 -4.8190 1.0278 15 6 0.9010 -4.7685 -0.0856 16 6 1.5461 -3.6249 -0.4344 17 7 2.4263 -3.6033 -1.6242 18 8 2.6871 -4.7207 -2.2707 19 8 2.9486 -2.4668 -2.0364 20 1 -0.4850 0.8368 -0.0738 21 1 0.7885 -0.5779 2.1127 22 1 -0.3104 -1.4321 3.0537 23 1 -0.4294 -5.7459 1.2751 24 1 1.0383 -5.6569 -0.6843 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715950.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:54 Heat of formation + Delta-G solvation = 23.740528 kcal Electronic energy + Delta-G solvation = -15147.918268 eV Core-core repulsion = 12283.791785 eV Total energy + Delta-G solvation = -2864.126484 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.65806 -36.76824 -35.69159 -34.62625 -33.33345 -32.57637 -30.60904 -28.43818 -25.96103 -24.36279 -21.48889 -20.59786 -18.45687 -17.11533 -16.71391 -15.96810 -15.68669 -15.12712 -14.61499 -14.26151 -13.34337 -13.29533 -12.83449 -12.34929 -11.95856 -11.76259 -11.33632 -11.20486 -10.85681 -10.67488 -10.20900 -10.11776 -9.80745 -9.51531 -9.25210 -9.08403 -8.06922 -7.74502 -6.87739 -4.97138 0.93632 2.20958 2.64578 2.66172 2.70889 2.75996 2.85814 3.15218 3.36144 3.74482 4.61394 4.64812 5.73635 5.92270 6.04634 6.19727 6.37502 6.64521 6.87416 7.16224 7.26705 7.34799 7.66202 7.70929 7.89820 8.25267 8.42187 8.71714 9.09824 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.013072 C = 0.007870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.536485 B = 2141.408619 C = 3557.071770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.050 3.950 3 Si 0.929 3.071 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.246 1.246 7 C -0.333 4.333 8 H 0.126 0.874 9 C 0.086 3.914 10 C 0.224 3.776 11 N -0.839 5.839 12 C -0.117 4.117 13 Cl -0.107 7.107 14 C -0.152 4.152 15 C -0.088 4.088 16 C -0.072 4.072 17 N 0.038 4.962 18 O -0.344 6.344 19 O -0.267 6.267 20 H 0.307 0.693 21 H 0.398 0.602 22 H 0.391 0.609 23 H 0.117 0.883 24 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.756 3.776 7.276 8.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.326 5.326 2 C -0.181 4.181 3 Si 0.750 3.250 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.169 1.169 7 C -0.361 4.361 8 H 0.143 0.857 9 C 0.079 3.921 10 C 0.113 3.887 11 N -0.376 5.376 12 C -0.152 4.152 13 Cl -0.079 7.079 14 C -0.174 4.174 15 C -0.110 4.110 16 C -0.174 4.174 17 N 0.461 4.539 18 O -0.490 6.490 19 O -0.432 6.432 20 H 0.120 0.880 21 H 0.229 0.771 22 H 0.220 0.780 23 H 0.135 0.865 24 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.201 3.727 7.581 9.034 hybrid contribution 0.134 0.866 -0.130 0.885 sum -3.067 4.593 7.451 9.274 Atomic orbital electron populations 1.69069 1.08965 1.32986 1.21548 1.27915 0.94976 1.02931 0.92281 0.85885 0.80816 0.77067 0.81273 1.17617 1.19107 1.16901 1.21591 0.98631 0.88708 1.27134 0.85668 1.17663 0.91874 0.92352 0.90200 1.18668 0.94602 0.85860 0.89562 1.41864 1.49764 1.12695 1.33288 1.19802 1.04867 0.95474 0.95077 1.98244 1.66760 1.98314 1.44543 1.19809 1.03908 0.96977 0.96708 1.19654 0.97249 0.96655 0.97451 1.19379 1.08203 0.98490 0.91349 1.49670 1.00850 1.01138 1.02201 1.96084 1.72974 1.18299 1.61643 1.96078 1.56281 1.14903 1.75931 0.87964 0.77091 0.78009 0.86494 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -14.04 11.62 55.99 0.65 -13.39 14 2 C 0.05 0.99 3.74 -15.16 -0.06 0.94 14 3 Si 0.93 14.67 29.68 -169.99 -5.04 9.63 14 4 H -0.25 -4.19 7.11 56.52 0.40 -3.79 14 5 H -0.27 -3.89 7.11 56.52 0.40 -3.49 14 6 H -0.25 -3.87 7.11 56.52 0.40 -3.47 14 7 C -0.33 -7.58 7.10 -35.74 -0.25 -7.83 14 8 H 0.13 2.96 6.61 -52.49 -0.35 2.61 14 9 C 0.09 2.05 5.44 -104.67 -0.57 1.48 14 10 C 0.22 4.70 6.48 -81.40 -0.53 4.17 14 11 N -0.84 -14.92 7.98 33.75 0.27 -14.65 14 12 C -0.12 -2.35 6.33 -39.34 -0.25 -2.60 14 13 Cl -0.11 -1.79 27.63 -51.86 -1.43 -3.22 14 14 C -0.15 -3.08 9.77 -39.37 -0.38 -3.46 14 15 C -0.09 -2.01 9.47 -40.07 -0.38 -2.39 14 16 C -0.07 -1.83 6.89 -79.50 -0.55 -2.38 14 17 N 0.04 1.04 4.98 34.18 0.17 1.21 14 18 O -0.34 -9.77 19.12 -31.57 -0.60 -10.38 14 19 O -0.27 -7.51 16.55 -31.57 -0.52 -8.03 14 20 H 0.31 5.32 8.27 -40.82 -0.34 4.98 14 21 H 0.40 6.88 5.94 -40.82 -0.24 6.63 14 22 H 0.39 6.13 7.53 -40.82 -0.31 5.82 14 23 H 0.12 2.07 8.06 -52.49 -0.42 1.64 14 24 H 0.12 2.66 7.51 -52.49 -0.39 2.27 14 LS Contribution 238.03 15.07 3.59 3.59 Total: -1.00 -27.35 238.03 -6.74 -34.10 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -0.85 Total: 13.21 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.97 Total: -12.07 kcal Atomic # 7 Polarization: -27.92 SS G_CDS: 1.09 Total: -26.83 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.13 Total: -18.40 kcal Atomic # 14 Polarization: 14.67 SS G_CDS: -5.04 Total: 9.63 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -1.43 Total: -3.22 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -27.35 -6.74 -34.10 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715950.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.836 kcal (2) G-P(sol) polarization free energy of solvation -27.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds