Wall clock time and date at job start Mon Mar 30 2020 05:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29502 * 1 3 3 Si 1.86800 * 119.99996 * 2 1 4 4 H 1.48499 * 109.46849 * 239.99279 * 3 2 1 5 5 H 1.48495 * 109.47610 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47136 * 119.99738 * 3 2 1 7 7 C 1.46552 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99980 * 191.85652 * 7 2 1 9 9 C 1.40168 * 120.00128 * 11.85350 * 7 2 1 10 10 C 1.41222 * 120.27160 * 21.90248 * 9 7 2 11 11 C 1.37949 * 119.64938 * 180.02562 * 10 9 7 12 12 N 1.39699 * 119.89391 * 180.02562 * 11 10 9 13 13 C 1.39638 * 120.20552 * 359.97438 * 11 10 9 14 14 N 1.48023 * 119.71811 * 179.74344 * 13 11 10 15 15 O 1.31700 * 119.99701 * 174.37795 * 14 13 11 16 16 O 1.31699 * 120.00121 * 354.38041 * 14 13 11 17 17 C 1.38465 * 120.56131 * 0.02562 * 13 11 10 18 18 C 1.37787 * 120.34741 * 0.02562 * 17 13 11 19 19 Cl 1.73597 * 120.11160 * 179.97438 * 18 17 13 20 20 H 0.97003 * 119.99633 * 5.00119 * 1 2 3 21 21 H 1.08002 * 120.16951 * 0.02562 * 10 9 7 22 22 H 0.97005 * 120.00487 * 329.57731 * 12 11 10 23 23 H 0.97003 * 120.00205 * 149.57618 * 12 11 10 24 24 H 1.07995 * 119.82578 * 179.97438 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 3.0829 1.6963 -1.2124 5 1 1.2641 2.7465 -0.0006 6 1 3.0828 1.6964 1.2126 7 6 2.0278 -1.2692 0.0006 8 1 3.0905 -1.2791 0.1928 9 6 1.3493 -2.4703 -0.2482 10 6 0.1161 -2.4619 -0.9364 11 6 -0.5408 -3.6515 -1.1739 12 7 -1.7608 -3.6492 -1.8546 13 6 0.0103 -4.8578 -0.7369 14 7 -0.7067 -6.1273 -0.9925 15 8 -0.1422 -7.2762 -0.6827 16 8 -1.9090 -6.1080 -1.5298 17 6 1.2188 -4.8760 -0.0614 18 6 1.8941 -3.7013 0.1891 19 17 3.4085 -3.7311 1.0370 20 1 -0.4850 0.8369 -0.0732 21 1 -0.3103 -1.5292 -1.2749 22 1 -2.3564 -2.8872 -1.7802 23 1 -2.0123 -4.4097 -2.4017 24 1 1.6340 -5.8157 0.2716 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715954.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:41 Heat of formation + Delta-G solvation = 16.931094 kcal Electronic energy + Delta-G solvation = -14815.350738 eV Core-core repulsion = 11950.928975 eV Total energy + Delta-G solvation = -2864.421763 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.83904 -36.95658 -35.59613 -34.69760 -33.63287 -32.58961 -30.73066 -27.82576 -27.03613 -23.92229 -21.65319 -20.85269 -18.32094 -17.26978 -16.85418 -16.15177 -15.79909 -15.21391 -14.55179 -14.00855 -13.85726 -13.18229 -12.83863 -12.57254 -11.89768 -11.69230 -11.48485 -11.01536 -10.80209 -10.72791 -10.06807 -10.02308 -9.95443 -9.68841 -9.54516 -9.14000 -8.42427 -7.74657 -6.99391 -5.27390 0.71589 2.27585 2.46534 2.58639 2.60982 2.63576 2.78810 3.23965 3.28361 3.77835 4.72372 4.81020 5.61277 5.95544 6.07713 6.19705 6.50147 6.62060 6.82615 7.07123 7.17739 7.36765 7.59600 7.81225 7.97634 8.23972 8.33908 8.62402 9.08556 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.026998 B = 0.008804 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.866476 B = 3179.541510 C = 4161.857235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.061 3.939 3 Si 0.933 3.067 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.251 1.251 7 C -0.354 4.354 8 H 0.109 0.891 9 C 0.128 3.872 10 C -0.248 4.248 11 C 0.276 3.724 12 N -0.873 5.873 13 C -0.148 4.148 14 N 0.053 4.947 15 O -0.306 6.306 16 O -0.307 6.307 17 C -0.004 4.004 18 C -0.129 4.129 19 Cl -0.092 7.092 20 H 0.305 0.695 21 H 0.149 0.851 22 H 0.392 0.608 23 H 0.403 0.597 24 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 6.721 -0.184 7.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.326 5.326 2 C -0.172 4.172 3 Si 0.753 3.247 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.175 1.175 7 C -0.378 4.378 8 H 0.127 0.873 9 C 0.122 3.878 10 C -0.275 4.275 11 C 0.169 3.831 12 N -0.423 5.423 13 C -0.252 4.252 14 N 0.479 4.521 15 O -0.465 6.465 16 O -0.462 6.462 17 C -0.025 4.025 18 C -0.159 4.159 19 Cl -0.063 7.063 20 H 0.118 0.882 21 H 0.167 0.833 22 H 0.220 0.780 23 H 0.239 0.761 24 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.913 6.963 0.013 7.548 hybrid contribution -0.220 0.218 -0.094 0.324 sum 2.693 7.182 -0.081 7.671 Atomic orbital electron populations 1.69067 1.09159 1.32612 1.21781 1.27872 0.94966 1.03160 0.91183 0.85903 0.80308 0.76993 0.81456 1.17505 1.19235 1.17508 1.21566 0.97133 0.89212 1.29928 0.87339 1.17372 0.91620 0.90595 0.88222 1.20955 0.98750 0.95872 1.11887 1.17228 0.85984 0.90852 0.89086 1.42893 1.19044 1.24971 1.55351 1.19514 1.00508 0.80219 1.24985 1.49876 1.00991 1.03653 0.97592 1.96127 1.70595 1.16361 1.63395 1.95931 1.02544 1.95378 1.52326 1.19986 0.91215 0.97712 0.93603 1.20639 0.91523 0.93959 1.09732 1.98248 1.32168 1.98755 1.77172 0.88174 0.83345 0.78045 0.76102 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -13.43 10.59 55.99 0.59 -12.84 14 2 C 0.06 1.12 5.45 -15.18 -0.08 1.04 14 3 Si 0.93 13.62 29.66 -169.99 -5.04 8.58 14 4 H -0.25 -3.68 7.11 56.52 0.40 -3.28 14 5 H -0.27 -3.79 7.11 56.52 0.40 -3.39 14 6 H -0.25 -3.70 7.11 56.52 0.40 -3.30 14 7 C -0.35 -7.20 8.86 -35.51 -0.31 -7.51 14 8 H 0.11 2.09 7.08 -52.48 -0.37 1.72 14 9 C 0.13 2.80 5.65 -106.78 -0.60 2.19 14 10 C -0.25 -5.42 8.69 -38.55 -0.34 -5.76 14 11 C 0.28 6.12 6.72 -83.86 -0.56 5.56 14 12 N -0.87 -16.94 8.27 32.37 0.27 -16.68 14 13 C -0.15 -3.51 6.92 -79.34 -0.55 -4.05 14 14 N 0.05 1.34 4.98 34.26 0.17 1.51 14 15 O -0.31 -8.05 19.14 -31.57 -0.60 -8.65 14 16 O -0.31 -7.70 16.51 -31.57 -0.52 -8.22 14 17 C 0.00 -0.09 9.33 -39.66 -0.37 -0.46 14 18 C -0.13 -2.76 6.39 -38.49 -0.25 -3.01 14 19 Cl -0.09 -1.72 27.56 -51.86 -1.43 -3.15 14 20 H 0.30 5.02 8.27 -40.82 -0.34 4.68 14 21 H 0.15 3.16 5.76 -52.49 -0.30 2.86 14 22 H 0.39 6.53 8.93 -40.82 -0.36 6.16 14 23 H 0.40 7.94 6.22 -40.82 -0.25 7.69 14 24 H 0.13 2.82 7.56 -52.49 -0.40 2.42 14 LS Contribution 239.89 15.07 3.62 3.62 Total: -1.00 -25.43 239.89 -6.84 -32.27 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -0.82 Total: 15.56 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.07 Total: -12.00 kcal Atomic # 7 Polarization: -29.04 SS G_CDS: 1.03 Total: -28.00 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -1.13 Total: -16.87 kcal Atomic # 14 Polarization: 13.62 SS G_CDS: -5.04 Total: 8.58 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -1.43 Total: -3.15 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -25.43 -6.84 -32.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715954.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.203 kcal (2) G-P(sol) polarization free energy of solvation -25.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds