Wall clock time and date at job start Mon Mar 30 2020 05:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29502 * 1 3 3 Si 1.86800 * 119.99996 * 2 1 4 4 H 1.48499 * 109.46849 * 239.99279 * 3 2 1 5 5 H 1.48495 * 109.47610 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47136 * 119.99738 * 3 2 1 7 7 C 1.46552 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99980 * 191.85652 * 7 2 1 9 9 C 1.40168 * 120.00128 * 11.85350 * 7 2 1 10 10 C 1.41222 * 120.27160 * 21.90248 * 9 7 2 11 11 C 1.37949 * 119.64938 * 180.02562 * 10 9 7 12 12 N 1.39699 * 119.89391 * 180.02562 * 11 10 9 13 13 C 1.39638 * 120.20552 * 359.97438 * 11 10 9 14 14 N 1.48023 * 119.71811 * 179.74344 * 13 11 10 15 15 O 1.31700 * 119.99701 * 174.37795 * 14 13 11 16 16 O 1.31699 * 120.00121 * 354.38041 * 14 13 11 17 17 C 1.38465 * 120.56131 * 0.02562 * 13 11 10 18 18 C 1.37787 * 120.34741 * 0.02562 * 17 13 11 19 19 Cl 1.73597 * 120.11160 * 179.97438 * 18 17 13 20 20 H 0.97003 * 119.99633 * 5.00119 * 1 2 3 21 21 H 1.08002 * 120.16951 * 0.02562 * 10 9 7 22 22 H 0.97005 * 120.00487 * 329.57731 * 12 11 10 23 23 H 0.97003 * 120.00205 * 149.57618 * 12 11 10 24 24 H 1.07995 * 119.82578 * 179.97438 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 3.0829 1.6963 -1.2124 5 1 1.2641 2.7465 -0.0006 6 1 3.0828 1.6964 1.2126 7 6 2.0278 -1.2692 0.0006 8 1 3.0905 -1.2791 0.1928 9 6 1.3493 -2.4703 -0.2482 10 6 0.1161 -2.4619 -0.9364 11 6 -0.5408 -3.6515 -1.1739 12 7 -1.7608 -3.6492 -1.8546 13 6 0.0103 -4.8578 -0.7369 14 7 -0.7067 -6.1273 -0.9925 15 8 -0.1422 -7.2762 -0.6827 16 8 -1.9090 -6.1080 -1.5298 17 6 1.2188 -4.8760 -0.0614 18 6 1.8941 -3.7013 0.1891 19 17 3.4085 -3.7311 1.0370 20 1 -0.4850 0.8369 -0.0732 21 1 -0.3103 -1.5292 -1.2749 22 1 -2.3564 -2.8872 -1.7802 23 1 -2.0123 -4.4097 -2.4017 24 1 1.6340 -5.8157 0.2716 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715954.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:41 Heat of formation + Delta-G solvation = 2.339457 kcal Electronic energy + Delta-G solvation = -14815.983479 eV Core-core repulsion = 11950.928975 eV Total energy + Delta-G solvation = -2865.054504 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53833 -38.67914 -37.24441 -36.31018 -35.31216 -34.30964 -32.43061 -29.51154 -28.76543 -25.64266 -23.36144 -22.53188 -19.93903 -19.01765 -18.60633 -17.76248 -17.37658 -16.73830 -16.32166 -15.60958 -15.42949 -14.80357 -14.31811 -14.24335 -13.42276 -13.11308 -12.99894 -12.58679 -12.35866 -12.05946 -11.76767 -11.69969 -11.51156 -11.45358 -11.34263 -10.78871 -10.13649 -9.26073 -8.66741 -6.95460 -1.14377 0.68392 0.77878 0.89241 1.38050 1.51686 1.53514 1.57482 2.07382 2.26352 3.10474 3.15921 3.90762 4.29998 4.42663 4.52474 4.79148 4.95479 5.12153 5.38695 5.50036 5.63649 5.94742 6.10662 6.26604 6.47646 6.71617 7.11930 7.60813 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.026998 B = 0.008804 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.866476 B = 3179.541510 C = 4161.857235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.025 3.975 3 Si 1.003 2.997 4 H -0.248 1.248 5 H -0.257 1.257 6 H -0.248 1.248 7 C -0.312 4.312 8 H 0.126 0.874 9 C 0.082 3.918 10 C -0.245 4.245 11 C 0.257 3.743 12 N -0.863 5.863 13 C -0.145 4.145 14 N 0.053 4.947 15 O -0.384 6.384 16 O -0.348 6.348 17 C -0.028 4.028 18 C -0.107 4.107 19 Cl -0.064 7.064 20 H 0.324 0.676 21 H 0.155 0.845 22 H 0.404 0.596 23 H 0.401 0.599 24 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.664 11.236 0.468 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.207 4.207 3 Si 0.819 3.181 4 H -0.172 1.172 5 H -0.180 1.180 6 H -0.172 1.172 7 C -0.336 4.336 8 H 0.143 0.857 9 C 0.076 3.924 10 C -0.273 4.273 11 C 0.149 3.851 12 N -0.413 5.413 13 C -0.256 4.256 14 N 0.455 4.545 15 O -0.522 6.522 16 O -0.491 6.491 17 C -0.049 4.049 18 C -0.138 4.138 19 Cl -0.036 7.036 20 H 0.138 0.862 21 H 0.173 0.827 22 H 0.234 0.766 23 H 0.237 0.763 24 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.587 11.254 0.643 12.170 hybrid contribution -0.481 -0.434 -0.123 0.660 sum 4.106 10.819 0.520 11.584 Atomic orbital electron populations 1.69022 1.10422 1.35003 1.18515 1.28776 0.95706 1.05423 0.90808 0.84870 0.79074 0.72661 0.81478 1.17159 1.18015 1.17168 1.22273 0.98005 0.89717 1.23654 0.85665 1.17671 0.92671 0.91307 0.90735 1.20999 0.98638 0.95677 1.11970 1.17335 0.87072 0.90497 0.90191 1.42801 1.18514 1.25340 1.54611 1.19957 1.00818 0.80206 1.24635 1.49891 1.01274 1.03739 0.99561 1.96072 1.71440 1.17331 1.67358 1.95861 1.03355 1.95442 1.54454 1.20049 0.91595 0.98199 0.95018 1.20833 0.91728 0.93511 1.07685 1.98257 1.30210 1.98717 1.76397 0.86159 0.82749 0.76586 0.76317 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -23.93 10.59 23.21 0.25 -23.68 14 2 C 0.03 0.80 5.45 87.21 0.48 1.28 14 3 Si 1.00 22.96 29.66 68.60 2.03 24.99 14 4 H -0.25 -5.65 7.11 99.48 0.71 -4.94 14 5 H -0.26 -5.49 7.11 99.48 0.71 -4.79 14 6 H -0.25 -5.65 7.11 99.48 0.71 -4.95 14 7 C -0.31 -11.36 8.86 24.91 0.22 -11.14 14 8 H 0.13 4.16 7.08 -2.91 -0.02 4.14 14 9 C 0.08 3.40 5.65 -21.26 -0.12 3.28 14 10 C -0.25 -10.34 8.69 22.93 0.20 -10.14 14 11 C 0.26 11.47 6.72 38.16 0.26 11.73 14 12 N -0.86 -33.88 8.27 -51.49 -0.43 -34.30 14 13 C -0.15 -7.13 6.92 36.77 0.25 -6.87 14 14 N 0.05 2.87 4.98 -45.53 -0.23 2.64 14 15 O -0.38 -22.00 19.14 3.51 0.07 -21.93 14 16 O -0.35 -18.70 16.51 3.52 0.06 -18.64 14 17 C -0.03 -1.26 9.33 22.22 0.21 -1.05 14 18 C -0.11 -4.44 6.39 22.98 0.15 -4.29 14 19 Cl -0.06 -2.25 27.56 -2.72 -0.07 -2.33 14 20 H 0.32 9.12 8.27 -92.71 -0.77 8.35 14 21 H 0.16 6.19 5.76 -2.91 -0.02 6.18 14 22 H 0.40 13.30 8.93 -92.70 -0.83 12.47 14 23 H 0.40 16.40 6.22 -92.71 -0.58 15.83 14 24 H 0.13 5.84 7.56 -2.91 -0.02 5.82 14 Total: -1.00 -55.56 239.89 3.21 -52.35 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: -0.11 Total: 38.10 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 1.64 Total: -17.20 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.41 Total: -55.34 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: 0.13 Total: -40.57 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: 2.03 Total: 24.99 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.07 Total: -2.33 kcal Total: -55.56 3.21 -52.35 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715954.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.692 kcal (2) G-P(sol) polarization free energy of solvation -55.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds