Wall clock time and date at job start Mon Mar 30 2020 05:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29491 * 1 3 3 Si 1.86800 * 120.00312 * 2 1 4 4 H 1.48501 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47022 * 300.00086 * 3 2 1 6 6 H 1.48501 * 109.47224 * 60.00206 * 3 2 1 7 7 C 1.46585 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00292 * 192.62599 * 7 2 1 9 9 C 1.39503 * 119.99969 * 12.61182 * 7 2 1 10 10 C 1.41769 * 120.17732 * 25.61922 * 9 7 2 11 11 C 1.35809 * 119.82682 * 180.02562 * 10 9 7 12 12 C 1.40152 * 120.20088 * 0.25580 * 11 10 9 13 13 N 1.37671 * 119.81772 * 179.74872 * 12 11 10 14 14 C 1.40288 * 120.36457 * 359.48737 * 12 11 10 15 15 Cl 1.73597 * 119.91612 * 180.25863 * 14 12 11 16 16 C 1.35908 * 120.16509 * 0.51059 * 14 12 11 17 17 N 1.48016 * 120.09963 * 179.72488 * 16 14 12 18 18 O 1.31704 * 120.00011 * 270.02215 * 17 16 14 19 19 O 1.31697 * 120.00340 * 90.02268 * 17 16 14 20 20 H 0.97002 * 119.99502 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.08634 * 359.97438 * 10 9 7 22 22 H 1.07996 * 119.90226 * 179.97438 * 11 10 9 23 23 H 0.96996 * 120.00609 * 359.97438 * 13 12 11 24 24 H 0.97006 * 120.00135 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 3.6890 1.3463 -0.0006 5 1 1.8703 2.3964 -1.2125 6 1 1.8703 2.3964 1.2125 7 6 2.0278 -1.2695 -0.0006 8 1 3.0883 -1.2809 0.2039 9 6 1.3556 -2.4629 -0.2649 10 6 0.1669 -2.4552 -1.0374 11 6 -0.4822 -3.6211 -1.2900 12 6 0.0168 -4.8295 -0.7849 13 7 -0.6503 -6.0062 -1.0414 14 6 1.1953 -4.8474 -0.0240 15 17 1.8066 -6.3515 0.5902 16 6 1.8568 -3.6893 0.2378 17 7 3.0967 -3.7091 1.0458 18 8 3.0317 -3.5807 2.3550 19 8 4.2651 -3.8550 0.4558 20 1 -0.4849 0.8401 0.0004 21 1 -0.2220 -1.5245 -1.4234 22 1 -1.3880 -3.6167 -1.8780 23 1 -1.4634 -5.9975 -1.5700 24 1 -0.3075 -6.8440 -0.6928 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716013.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:56 Heat of formation + Delta-G solvation = 11.365516 kcal Electronic energy + Delta-G solvation = -15014.692790 eV Core-core repulsion = 12150.029686 eV Total energy + Delta-G solvation = -2864.663104 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.66013 -39.15056 -37.59696 -36.43180 -35.25782 -34.73139 -32.12707 -30.79000 -27.79156 -26.01945 -23.33238 -22.69352 -19.93894 -19.18593 -19.11134 -18.32382 -17.12077 -16.72466 -16.35326 -16.10168 -14.96440 -14.81545 -14.72123 -14.06802 -13.55374 -13.06965 -12.77887 -12.66540 -12.53447 -12.41577 -12.24459 -12.04239 -11.73853 -11.69603 -11.67942 -11.05188 -9.95428 -9.11911 -8.76963 -6.52326 -1.05055 0.21753 0.52390 0.69194 1.15997 1.32151 1.39230 1.46072 2.08812 2.31064 3.09761 3.20885 4.11303 4.34218 4.43722 4.62125 4.75783 4.93768 5.04722 5.36910 5.54310 5.67220 5.80517 6.07359 6.24875 6.39573 6.71296 7.13018 7.84717 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.026943 B = 0.009927 C = 0.007656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.985284 B = 2819.885894 C = 3656.513333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.051 3.949 3 Si 0.990 3.010 4 H -0.270 1.270 5 H -0.239 1.239 6 H -0.254 1.254 7 C -0.483 4.483 8 H 0.061 0.939 9 C 0.096 3.904 10 C -0.108 4.108 11 C -0.120 4.120 12 C 0.138 3.862 13 N -0.859 5.859 14 C -0.068 4.068 15 Cl -0.083 7.083 16 C -0.155 4.155 17 N 0.023 4.977 18 O -0.192 6.192 19 O -0.196 6.196 20 H 0.314 0.686 21 H 0.147 0.853 22 H 0.160 0.840 23 H 0.412 0.588 24 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.625 -1.791 -4.416 7.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.176 4.176 3 Si 0.808 3.192 4 H -0.195 1.195 5 H -0.163 1.163 6 H -0.178 1.178 7 C -0.509 4.509 8 H 0.079 0.921 9 C 0.091 3.909 10 C -0.127 4.127 11 C -0.142 4.142 12 C 0.033 3.967 13 N -0.403 5.403 14 C -0.103 4.103 15 Cl -0.054 7.054 16 C -0.240 4.240 17 N 0.515 4.485 18 O -0.396 6.396 19 O -0.399 6.399 20 H 0.128 0.872 21 H 0.165 0.835 22 H 0.178 0.822 23 H 0.243 0.757 24 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.443 -1.730 -4.773 8.203 hybrid contribution 0.982 -0.026 0.608 1.155 sum -5.461 -1.756 -4.164 7.088 Atomic orbital electron populations 1.68959 1.09421 1.33409 1.26228 1.28128 0.95558 1.04071 0.89867 0.85039 0.78937 0.74679 0.80547 1.19453 1.16252 1.17842 1.20753 0.95785 0.91572 1.42755 0.92115 1.17302 0.93707 0.88695 0.91147 1.21245 0.94763 0.98903 0.97824 1.20700 1.01450 0.89702 1.02318 1.16838 0.91153 0.89258 0.99436 1.41502 1.30931 1.04995 1.62904 1.19165 0.98693 0.83754 1.08652 1.98276 1.87364 1.32952 1.86852 1.19390 0.92035 0.97174 1.15381 1.50389 1.04401 0.91485 1.02183 1.96127 1.95984 1.54728 0.92777 1.96117 1.15434 1.54665 1.73714 0.87222 0.83527 0.82240 0.75744 0.77432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -32.56 10.85 23.22 0.25 -32.30 14 2 C 0.05 2.25 5.40 87.22 0.47 2.72 14 3 Si 0.99 34.18 29.66 68.60 2.03 36.21 14 4 H -0.27 -10.12 7.11 99.48 0.71 -9.41 14 5 H -0.24 -7.31 7.11 99.48 0.71 -6.60 14 6 H -0.25 -8.31 7.11 99.48 0.71 -7.60 14 7 C -0.48 -25.21 8.94 24.75 0.22 -24.99 14 8 H 0.06 3.40 7.62 -2.91 -0.02 3.38 14 9 C 0.10 4.95 5.61 -21.25 -0.12 4.83 14 10 C -0.11 -4.71 8.69 22.58 0.20 -4.51 14 11 C -0.12 -4.39 9.81 22.17 0.22 -4.18 14 12 C 0.14 5.20 6.77 39.19 0.27 5.47 14 13 N -0.86 -23.68 8.95 -50.96 -0.46 -24.13 14 14 C -0.07 -3.07 6.30 22.23 0.14 -2.93 14 15 Cl -0.08 -3.33 26.99 -2.72 -0.07 -3.40 14 16 C -0.16 -8.07 6.25 36.69 0.23 -7.84 14 17 N 0.02 1.26 3.40 -45.71 -0.16 1.10 14 18 O -0.19 -10.60 19.97 3.51 0.07 -10.53 14 19 O -0.20 -10.66 19.97 3.52 0.07 -10.59 14 20 H 0.31 11.44 8.27 -92.71 -0.77 10.67 14 21 H 0.15 6.25 6.06 -2.91 -0.02 6.23 14 22 H 0.16 4.35 8.06 -2.91 -0.02 4.33 14 23 H 0.41 8.36 8.81 -92.71 -0.82 7.54 14 24 H 0.40 10.49 7.45 -92.70 -0.69 9.80 14 Total: -1.00 -59.88 245.14 3.15 -56.73 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -0.22 Total: 18.34 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 1.62 Total: -31.43 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.36 Total: -55.33 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.14 Total: -21.12 kcal Atomic # 14 Polarization: 34.18 SS G_CDS: 2.03 Total: 36.21 kcal Atomic # 17 Polarization: -3.33 SS G_CDS: -0.07 Total: -3.40 kcal Total: -59.88 3.15 -56.73 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716013.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.098 kcal (2) G-P(sol) polarization free energy of solvation -59.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds