Wall clock time and date at job start Mon Mar 30 2020 05:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29454 * 1 3 3 Si 1.86798 * 120.00126 * 2 1 4 4 H 1.48498 * 109.47160 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46979 * 299.99841 * 3 2 1 6 6 H 1.48498 * 109.46943 * 60.00062 * 3 2 1 7 7 C 1.46663 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00297 * 191.67768 * 7 2 1 9 9 C 1.39419 * 120.00324 * 11.68045 * 7 2 1 10 10 C 1.41702 * 120.66094 * 25.85542 * 9 7 2 11 11 C 1.35821 * 119.87158 * 180.02562 * 10 9 7 12 12 C 1.39269 * 121.35705 * 0.26078 * 11 10 9 13 13 N 1.48016 * 119.30344 * 179.74609 * 12 11 10 14 14 O 1.31703 * 119.99893 * 359.97438 * 13 12 11 15 15 O 1.31699 * 120.00458 * 180.02562 * 13 12 11 16 16 C 1.37772 * 121.39705 * 359.47343 * 12 11 10 17 17 Cl 1.73601 * 120.00137 * 180.26242 * 16 12 11 18 18 C 1.39352 * 119.99907 * 0.51546 * 16 12 11 19 19 N 1.37577 * 120.65202 * 179.71890 * 18 16 12 20 20 H 0.96998 * 119.99719 * 0.02562 * 1 2 3 21 21 H 1.08004 * 120.06190 * 0.02562 * 10 9 7 22 22 H 1.07999 * 119.32262 * 179.97438 * 11 10 9 23 23 H 0.96999 * 120.00189 * 180.02562 * 19 18 16 24 24 H 0.96999 * 119.99883 * 0.03181 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2945 0.0000 0.0000 3 14 2.2286 1.6177 0.0000 4 1 3.6885 1.3463 0.0006 5 1 1.8698 2.3964 -1.2125 6 1 1.8698 2.3964 1.2125 7 6 2.0279 -1.2701 0.0006 8 1 3.0911 -1.2798 0.1899 9 6 1.3525 -2.4652 -0.2433 10 6 0.1555 -2.4770 -1.0016 11 6 -0.4897 -3.6503 -1.2291 12 6 -0.0027 -4.8544 -0.7264 13 7 -0.7455 -6.1058 -0.9971 14 8 -1.8547 -6.0728 -1.7064 15 8 -0.2978 -7.2520 -0.5280 16 6 1.1587 -4.9062 0.0130 17 17 1.7363 -6.4281 0.6164 18 6 1.8668 -3.7364 0.2809 19 7 3.0250 -3.7718 1.0226 20 1 -0.4849 0.8400 -0.0004 21 1 -0.2430 -1.5547 -1.3980 22 1 -1.4015 -3.6490 -1.8078 23 1 3.5103 -2.9517 1.2037 24 1 3.3564 -4.6170 1.3643 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716019.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:47 Heat of formation + Delta-G solvation = 5.693641 kcal Electronic energy + Delta-G solvation = -14834.172906 eV Core-core repulsion = 11969.263850 eV Total energy + Delta-G solvation = -2864.909055 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25151 -38.42401 -37.19474 -36.12327 -35.36358 -34.22406 -32.26817 -29.85102 -28.51121 -25.51895 -23.17818 -22.48380 -19.98203 -18.98405 -18.54292 -17.55192 -17.33628 -16.59814 -16.04004 -15.88561 -15.01776 -14.93301 -14.38557 -14.17520 -13.67629 -13.13217 -12.93614 -12.52582 -12.23594 -12.07592 -11.92570 -11.63459 -11.48467 -11.27633 -11.05706 -10.40847 -9.99696 -9.46804 -8.72633 -6.74861 -1.06366 0.70781 0.92604 1.30263 1.34874 1.51208 1.65598 1.70837 2.04005 2.20854 2.99352 3.06389 3.97876 4.22020 4.41506 4.43214 4.72708 4.84209 5.14543 5.29763 5.49771 5.72481 5.84251 5.90960 6.19160 6.61943 6.95709 7.06661 7.41157 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.035013 B = 0.007884 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.509628 B = 3550.571754 C = 4285.765334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.012 3.988 3 Si 1.016 2.984 4 H -0.230 1.230 5 H -0.259 1.259 6 H -0.258 1.258 7 C -0.240 4.240 8 H 0.154 0.846 9 C 0.033 3.967 10 C -0.147 4.147 11 C -0.064 4.064 12 C -0.088 4.088 13 N 0.039 4.961 14 O -0.457 6.457 15 O -0.393 6.393 16 C -0.123 4.123 17 Cl -0.066 7.066 18 C 0.185 3.815 19 N -0.835 5.835 20 H 0.333 0.667 21 H 0.153 0.847 22 H 0.111 0.889 23 H 0.415 0.585 24 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.467 15.315 4.072 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.222 4.222 3 Si 0.831 3.169 4 H -0.151 1.151 5 H -0.183 1.183 6 H -0.182 1.182 7 C -0.263 4.263 8 H 0.172 0.828 9 C 0.027 3.973 10 C -0.170 4.170 11 C -0.084 4.084 12 C -0.203 4.203 13 N 0.419 4.581 14 O -0.575 6.575 15 O -0.524 6.524 16 C -0.161 4.161 17 Cl -0.037 7.037 18 C 0.073 3.927 19 N -0.379 5.379 20 H 0.148 0.852 21 H 0.170 0.830 22 H 0.129 0.871 23 H 0.247 0.753 24 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 11.073 15.151 4.037 19.195 hybrid contribution -0.493 -0.700 0.009 0.856 sum 10.579 14.452 4.046 18.361 Atomic orbital electron populations 1.69020 1.10970 1.36072 1.15145 1.29078 0.95843 1.05814 0.91477 0.84566 0.80287 0.72103 0.79923 1.15149 1.18336 1.18206 1.22636 0.98687 0.88946 1.16020 0.82843 1.18928 0.94118 0.90467 0.93834 1.20997 0.97402 0.96071 1.02544 1.20087 0.99367 0.90399 0.98557 1.19341 0.99460 0.82387 1.19151 1.49700 1.02111 1.03798 1.02534 1.95958 1.15961 1.95977 1.49630 1.96019 1.75362 1.17743 1.63256 1.19207 0.99075 0.86805 1.10976 1.98269 1.87872 1.30714 1.86893 1.18423 0.89507 0.90022 0.94772 1.41627 1.24427 1.13301 1.58510 0.85207 0.83012 0.87145 0.75257 0.76702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -20.03 10.85 23.24 0.25 -19.78 14 2 C 0.01 0.30 5.43 87.24 0.47 0.78 14 3 Si 1.02 16.36 29.66 68.60 2.03 18.40 14 4 H -0.23 -3.23 7.11 99.48 0.71 -2.53 14 5 H -0.26 -4.44 7.11 99.48 0.71 -3.73 14 6 H -0.26 -4.28 7.11 99.48 0.71 -3.57 14 7 C -0.24 -6.53 8.84 24.76 0.22 -6.31 14 8 H 0.15 3.00 6.91 -2.91 -0.02 2.98 14 9 C 0.03 1.19 5.77 -19.90 -0.11 1.08 14 10 C -0.15 -5.99 8.71 22.56 0.20 -5.79 14 11 C -0.06 -3.09 9.44 21.96 0.21 -2.88 14 12 C -0.09 -4.78 6.89 36.51 0.25 -4.53 14 13 N 0.04 2.48 4.98 -46.14 -0.23 2.25 14 14 O -0.46 -30.58 19.07 3.51 0.07 -30.52 14 15 O -0.39 -25.39 16.45 3.52 0.06 -25.33 14 16 C -0.12 -5.83 6.33 22.43 0.14 -5.69 14 17 Cl -0.07 -3.00 24.33 -2.72 -0.07 -3.07 14 18 C 0.18 6.99 6.97 40.75 0.28 7.27 14 19 N -0.84 -22.89 8.91 -47.14 -0.42 -23.31 14 20 H 0.33 7.84 8.27 -92.71 -0.77 7.07 14 21 H 0.15 5.69 6.10 -2.91 -0.02 5.67 14 22 H 0.11 5.48 7.50 -2.91 -0.02 5.46 14 23 H 0.42 8.21 7.27 -92.71 -0.67 7.54 14 24 H 0.40 10.61 7.53 -92.71 -0.70 9.91 14 Total: -1.00 -71.89 237.52 3.28 -68.61 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.08 Total: 28.79 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 1.66 Total: -16.07 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: -0.40 Total: -40.83 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: 0.12 Total: -55.84 kcal Atomic # 14 Polarization: 16.36 SS G_CDS: 2.03 Total: 18.40 kcal Atomic # 17 Polarization: -3.00 SS G_CDS: -0.07 Total: -3.07 kcal Total: -71.89 3.28 -68.61 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716019.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.305 kcal (2) G-P(sol) polarization free energy of solvation -71.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds