Wall clock time and date at job start Mon Mar 30 2020 05:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29497 * 1 3 3 Si 1.86802 * 119.99846 * 2 1 4 4 H 1.48504 * 109.47126 * 90.00187 * 3 2 1 5 5 H 1.48498 * 109.47097 * 210.00196 * 3 2 1 6 6 H 1.48496 * 109.47326 * 330.00198 * 3 2 1 7 7 C 1.46556 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99686 * 16.35911 * 7 2 1 9 9 C 1.40192 * 119.99851 * 196.35476 * 7 2 1 10 10 C 1.41408 * 120.27547 * 27.31061 * 9 7 2 11 11 C 1.36357 * 119.96880 * 179.75585 * 10 9 7 12 12 N 1.48015 * 119.72269 * 180.25109 * 11 10 9 13 13 O 1.31696 * 120.00412 * 180.26426 * 12 11 10 14 14 O 1.31704 * 119.99991 * 0.26938 * 12 11 10 15 15 C 1.38812 * 120.55669 * 0.52178 * 11 10 9 16 16 C 1.39249 * 120.55779 * 359.73188 * 15 11 10 17 17 N 1.39778 * 119.99348 * 180.02562 * 16 15 11 18 18 C 1.38437 * 120.00804 * 0.02562 * 16 15 11 19 19 Cl 1.73602 * 120.27005 * 180.02562 * 18 16 15 20 20 H 0.96999 * 119.99845 * 175.32144 * 1 2 3 21 21 H 1.07997 * 120.01126 * 0.02562 * 10 9 7 22 22 H 1.08001 * 119.72144 * 179.75326 * 15 11 10 23 23 H 0.97005 * 119.99825 * 179.97438 * 17 16 15 24 24 H 0.96997 * 120.00270 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2289 1.6178 0.0000 4 1 2.4765 2.0465 1.4001 5 1 3.5265 1.4403 -0.7001 6 1 1.4264 2.6527 -0.7000 7 6 2.0278 -1.2692 -0.0006 8 1 1.5205 -2.1855 -0.2644 9 6 3.3872 -1.2938 0.3413 10 6 3.9227 -0.3115 1.2060 11 6 5.2448 -0.3443 1.5383 12 7 5.7985 0.6834 2.4483 13 8 7.0756 0.6600 2.7688 14 8 5.0139 1.6213 2.9376 15 6 6.0770 -1.3301 1.0260 16 6 5.5745 -2.3054 0.1685 17 7 6.4230 -3.2930 -0.3401 18 6 4.2349 -2.2971 -0.1804 19 17 3.6011 -3.5101 -1.2484 20 1 -0.4850 -0.8372 -0.0685 21 1 3.2840 0.4619 1.6064 22 1 7.1229 -1.3410 1.2951 23 1 6.0730 -3.9727 -0.9372 24 1 7.3617 -3.2987 -0.0960 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575716041.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:38 Heat of formation + Delta-G solvation = 19.698714 kcal Electronic energy + Delta-G solvation = -14929.968879 eV Core-core repulsion = 12065.667129 eV Total energy + Delta-G solvation = -2864.301750 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.20515 -37.65745 -35.48340 -34.87557 -33.74554 -33.46135 -30.98972 -28.47631 -25.73712 -25.36636 -21.62208 -20.88775 -18.98279 -17.54874 -17.45329 -16.23764 -16.00898 -15.30356 -15.18383 -14.16963 -14.12364 -13.24379 -12.87048 -12.52500 -11.95935 -11.57783 -11.16964 -10.93167 -10.77524 -10.66427 -10.48913 -10.19125 -10.08234 -10.01091 -9.91967 -9.45212 -8.42844 -7.85057 -7.17755 -5.10526 0.08204 1.93039 2.13271 2.25997 3.01803 3.07841 3.17127 3.26302 3.63650 3.92224 4.26248 4.70987 5.65318 5.74640 5.88034 5.95204 6.30465 6.51342 6.69646 6.77314 6.94429 7.00846 7.46744 7.58583 7.79673 7.91065 8.00671 8.15501 9.33203 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.015115 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.188892 B = 1852.008958 C = 3423.035692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.043 3.957 3 Si 1.054 2.946 4 H -0.251 1.251 5 H -0.258 1.258 6 H -0.275 1.275 7 C -0.459 4.459 8 H 0.100 0.900 9 C 0.117 3.883 10 C -0.202 4.202 11 C 0.095 3.905 12 N -0.011 5.011 13 O -0.195 6.195 14 O -0.193 6.193 15 C -0.289 4.289 16 C 0.278 3.722 17 N -0.877 5.877 18 C -0.195 4.195 19 Cl -0.093 7.093 20 H 0.300 0.700 21 H 0.137 0.863 22 H 0.129 0.871 23 H 0.397 0.603 24 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.507 -3.591 -2.450 6.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.187 4.187 3 Si 0.877 3.123 4 H -0.176 1.176 5 H -0.182 1.182 6 H -0.201 1.201 7 C -0.484 4.484 8 H 0.118 0.882 9 C 0.112 3.888 10 C -0.224 4.224 11 C 0.009 3.991 12 N 0.465 4.535 13 O -0.388 6.388 14 O -0.385 6.385 15 C -0.313 4.313 16 C 0.172 3.828 17 N -0.418 5.418 18 C -0.228 4.228 19 Cl -0.065 7.065 20 H 0.113 0.887 21 H 0.154 0.846 22 H 0.147 0.853 23 H 0.227 0.773 24 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.829 -2.528 -2.863 5.409 hybrid contribution 0.387 -1.917 0.058 1.956 sum 4.217 -4.445 -2.805 6.738 Atomic orbital electron populations 1.70013 1.08674 1.34497 1.23369 1.29081 0.95314 1.04701 0.89634 0.83856 0.75971 0.72341 0.80170 1.17623 1.18176 1.20148 1.22163 0.93545 0.96611 1.36085 0.88187 1.16852 0.92969 0.88911 0.90075 1.20805 0.92712 1.04581 1.04280 1.19508 0.93800 0.90113 0.95665 1.50832 1.02124 1.01531 0.99023 1.96167 0.94414 1.82657 1.65527 1.96225 1.55692 1.29344 1.57248 1.19247 0.99904 1.00634 1.11543 1.16688 0.88031 0.87665 0.90409 1.42415 1.10881 1.32391 1.56091 1.20281 0.91157 1.02228 1.09105 1.98210 1.87409 1.55577 1.65301 0.88682 0.84558 0.85281 0.77310 0.77786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.20 13.58 55.99 0.76 -16.44 14 2 C 0.04 0.98 5.61 -15.18 -0.09 0.90 14 3 Si 1.05 22.00 24.97 -169.99 -4.24 17.75 14 4 H -0.25 -5.20 6.53 56.52 0.37 -4.83 14 5 H -0.26 -5.44 6.96 56.52 0.39 -5.05 14 6 H -0.28 -5.47 7.11 56.52 0.40 -5.07 14 7 C -0.46 -10.71 9.17 -35.50 -0.33 -11.04 14 8 H 0.10 2.37 7.34 -52.48 -0.39 1.98 14 9 C 0.12 2.70 5.25 -106.78 -0.56 2.14 14 10 C -0.20 -4.66 6.81 -39.05 -0.27 -4.92 14 11 C 0.10 2.13 6.83 -80.41 -0.55 1.58 14 12 N -0.01 -0.26 4.98 33.73 0.17 -0.09 14 13 O -0.19 -4.30 19.12 -31.57 -0.60 -4.90 14 14 O -0.19 -4.51 19.10 -31.57 -0.60 -5.11 14 15 C -0.29 -5.86 9.43 -38.99 -0.37 -6.22 14 16 C 0.28 5.35 6.75 -83.79 -0.57 4.79 14 17 N -0.88 -12.95 9.05 32.41 0.29 -12.66 14 18 C -0.19 -4.11 6.41 -38.34 -0.25 -4.35 14 19 Cl -0.09 -1.74 26.29 -51.86 -1.36 -3.10 14 20 H 0.30 6.57 8.74 -40.82 -0.36 6.21 14 21 H 0.14 3.16 3.67 -52.49 -0.19 2.97 14 22 H 0.13 2.40 7.55 -52.49 -0.40 2.01 14 23 H 0.40 5.43 7.50 -40.82 -0.31 5.12 14 24 H 0.39 4.76 8.84 -40.82 -0.36 4.40 14 LS Contribution 237.60 15.07 3.58 3.58 Total: -1.00 -24.56 237.60 -5.81 -30.37 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -0.83 Total: 7.74 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.97 Total: -17.13 kcal Atomic # 7 Polarization: -30.42 SS G_CDS: 1.22 Total: -29.19 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.21 Total: -10.02 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.24 Total: 17.75 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -1.36 Total: -3.10 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -24.56 -5.81 -30.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716041.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.074 kcal (2) G-P(sol) polarization free energy of solvation -24.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds