Wall clock time and date at job start Mon Mar 30 2020 05:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29442 * 1 3 3 Si 1.86801 * 120.00300 * 2 1 4 4 H 1.48505 * 109.47425 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46815 * 299.99747 * 3 2 1 6 6 H 1.48506 * 109.47153 * 59.99452 * 3 2 1 7 7 C 1.46697 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99936 * 199.23247 * 7 2 1 9 9 C 1.39290 * 119.99621 * 19.22987 * 7 2 1 10 10 C 1.46887 * 120.67927 * 42.58940 * 9 7 2 11 11 N 1.37610 * 120.63590 * 359.97438 * 10 9 7 12 12 C 1.39061 * 118.72646 * 180.02562 * 10 9 7 13 13 N 1.48017 * 119.96097 * 179.97438 * 12 10 9 14 14 O 1.31702 * 119.99885 * 186.44636 * 13 12 10 15 15 O 1.31699 * 120.00312 * 6.45338 * 13 12 10 16 16 C 1.37864 * 120.07487 * 359.97438 * 12 10 9 17 17 C 1.39055 * 121.43863 * 0.02562 * 16 12 10 18 18 C 1.36105 * 121.32479 * 0.02562 * 17 16 12 19 19 Cl 1.73596 * 120.10563 * 180.02562 * 18 17 16 20 20 H 0.96997 * 119.99641 * 4.89869 * 1 2 3 21 21 H 0.97003 * 120.00252 * 207.32367 * 11 10 9 22 22 H 0.97004 * 119.99925 * 27.32613 * 11 10 9 23 23 H 1.07994 * 119.28276 * 179.74661 * 16 12 10 24 24 H 1.08002 * 119.33433 * 180.02562 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2944 0.0000 0.0000 3 14 2.2285 1.6177 0.0000 4 1 3.6886 1.3463 0.0006 5 1 1.8698 2.3963 -1.2125 6 1 1.8697 2.3965 1.2125 7 6 2.0279 -1.2704 0.0006 8 1 3.0627 -1.2964 0.3087 9 6 1.3897 -2.4432 -0.3962 10 6 0.5072 -2.4558 -1.5704 11 7 0.2942 -1.3086 -2.2999 12 6 -0.1098 -3.6491 -1.9299 13 7 -1.0050 -3.6927 -3.1079 14 8 -1.6883 -4.7863 -3.3755 15 8 -1.1181 -2.6381 -3.8885 16 6 0.1113 -4.7914 -1.1904 17 6 0.9458 -4.7851 -0.0781 18 6 1.5779 -3.6495 0.3259 19 17 2.6133 -3.6778 1.7190 20 1 -0.4849 0.8370 -0.0717 21 1 -0.5342 -1.1929 -2.7910 22 1 0.9726 -0.6156 -2.3231 23 1 -0.3776 -5.7101 -1.4787 24 1 1.0952 -5.6998 0.4764 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575716057.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:59 Heat of formation + Delta-G solvation = 28.931661 kcal Electronic energy + Delta-G solvation = -15101.453950 eV Core-core repulsion = 12237.552571 eV Total energy + Delta-G solvation = -2863.901379 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.97954 -37.14409 -35.46049 -34.48448 -33.66679 -32.83233 -30.70037 -28.78864 -25.37876 -25.08817 -21.44954 -20.90561 -18.38882 -17.24981 -16.67201 -16.27725 -16.07408 -15.49654 -14.87163 -14.07819 -13.80832 -13.30721 -12.59954 -12.17399 -11.87736 -11.55190 -11.23802 -11.17680 -10.94209 -10.59508 -10.33016 -10.06779 -9.90308 -9.84189 -9.67914 -9.41093 -8.13267 -7.50196 -6.91147 -4.79766 0.41905 2.23934 2.28324 2.36579 2.74958 2.76694 2.82070 3.33614 3.49368 3.92241 4.63202 4.66195 5.57762 5.89439 5.91125 6.28095 6.41334 6.54387 6.78060 7.01443 7.23290 7.43090 7.70081 7.83463 7.91372 8.08320 8.26651 8.45455 9.46259 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.011881 C = 0.007728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.006178 B = 2356.101656 C = 3622.385224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.069 3.931 3 Si 0.912 3.088 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.443 4.443 8 H 0.104 0.896 9 C 0.086 3.914 10 C 0.268 3.732 11 N -0.803 5.803 12 C -0.046 4.046 13 N 0.028 4.972 14 O -0.251 6.251 15 O -0.264 6.264 16 C -0.183 4.183 17 C -0.084 4.084 18 C -0.119 4.119 19 Cl -0.096 7.096 20 H 0.297 0.703 21 H 0.405 0.595 22 H 0.398 0.602 23 H 0.125 0.875 24 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.563 1.669 1.433 4.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.174 1.174 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.122 0.878 9 C 0.079 3.921 10 C 0.149 3.851 11 N -0.348 5.348 12 C -0.145 4.145 13 N 0.474 4.526 14 O -0.425 6.425 15 O -0.431 6.431 16 C -0.205 4.205 17 C -0.105 4.105 18 C -0.149 4.149 19 Cl -0.068 7.068 20 H 0.109 0.891 21 H 0.243 0.757 22 H 0.228 0.772 23 H 0.143 0.857 24 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.620 1.830 1.912 4.485 hybrid contribution -0.140 1.021 -0.327 1.082 sum 3.480 2.852 1.585 4.770 Atomic orbital electron populations 1.69089 1.08833 1.31908 1.25750 1.27487 0.94488 1.01919 0.92022 0.86149 0.81647 0.79356 0.79407 1.17400 1.18974 1.19289 1.20462 0.98767 0.89450 1.38210 0.87847 1.17922 0.92678 0.93028 0.88446 1.19229 0.93471 0.83959 0.88414 1.42493 1.22191 1.18425 1.51675 1.19839 1.06162 0.96570 0.91951 1.50347 0.99507 1.01014 1.01687 1.96157 1.47085 1.18233 1.81044 1.95968 1.75424 1.23227 1.48463 1.19588 1.05963 0.96147 0.98754 1.19806 0.97655 0.96780 0.96287 1.20221 1.05597 0.96110 0.92967 1.98232 1.67080 1.98732 1.42731 0.89061 0.75729 0.77152 0.85727 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -15.43 11.67 56.00 0.65 -14.77 14 2 C 0.07 1.38 3.88 -15.14 -0.06 1.33 14 3 Si 0.91 15.01 29.68 -169.99 -5.05 9.97 14 4 H -0.25 -4.17 7.11 56.52 0.40 -3.77 14 5 H -0.27 -4.22 7.11 56.52 0.40 -3.82 14 6 H -0.27 -4.52 7.11 56.52 0.40 -4.12 14 7 C -0.44 -9.51 8.11 -35.78 -0.29 -9.80 14 8 H 0.10 2.19 7.78 -52.49 -0.41 1.78 14 9 C 0.09 1.91 5.49 -104.63 -0.57 1.34 14 10 C 0.27 5.97 6.47 -81.47 -0.53 5.45 14 11 N -0.80 -16.14 6.53 33.72 0.22 -15.92 14 12 C -0.05 -1.06 6.89 -79.78 -0.55 -1.61 14 13 N 0.03 0.68 4.98 34.04 0.17 0.85 14 14 O -0.25 -6.10 19.14 -31.57 -0.60 -6.70 14 15 O -0.26 -6.15 16.58 -31.57 -0.52 -6.67 14 16 C -0.18 -3.91 9.54 -39.42 -0.38 -4.28 14 17 C -0.08 -1.69 9.68 -40.04 -0.39 -2.08 14 18 C -0.12 -2.54 6.35 -38.97 -0.25 -2.78 14 19 Cl -0.10 -1.85 27.95 -51.86 -1.45 -3.30 14 20 H 0.30 5.60 8.27 -40.82 -0.34 5.26 14 21 H 0.40 8.12 6.11 -40.82 -0.25 7.87 14 22 H 0.40 7.38 7.20 -40.82 -0.29 7.09 14 23 H 0.12 2.51 7.54 -52.49 -0.40 2.11 14 24 H 0.12 2.02 8.06 -52.49 -0.42 1.60 14 LS Contribution 239.22 15.07 3.60 3.60 Total: -1.00 -24.50 239.22 -6.89 -31.38 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -0.90 Total: 14.00 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -3.01 Total: -12.44 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 1.04 Total: -29.85 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -1.13 Total: -13.37 kcal Atomic # 14 Polarization: 15.01 SS G_CDS: -5.05 Total: 9.97 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -1.45 Total: -3.30 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -24.50 -6.89 -31.38 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716057.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.316 kcal (2) G-P(sol) polarization free energy of solvation -24.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds