Wall clock time and date at job start Mon Mar 30 2020 05:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29442 * 1 3 3 Si 1.86801 * 120.00300 * 2 1 4 4 H 1.48505 * 109.47425 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46815 * 299.99747 * 3 2 1 6 6 H 1.48506 * 109.47153 * 59.99452 * 3 2 1 7 7 C 1.46697 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99936 * 199.23247 * 7 2 1 9 9 C 1.39290 * 119.99621 * 19.22987 * 7 2 1 10 10 C 1.46887 * 120.67927 * 42.58940 * 9 7 2 11 11 N 1.37610 * 120.63590 * 359.97438 * 10 9 7 12 12 C 1.39061 * 118.72646 * 180.02562 * 10 9 7 13 13 N 1.48017 * 119.96097 * 179.97438 * 12 10 9 14 14 O 1.31702 * 119.99885 * 186.44636 * 13 12 10 15 15 O 1.31699 * 120.00312 * 6.45338 * 13 12 10 16 16 C 1.37864 * 120.07487 * 359.97438 * 12 10 9 17 17 C 1.39055 * 121.43863 * 0.02562 * 16 12 10 18 18 C 1.36105 * 121.32479 * 0.02562 * 17 16 12 19 19 Cl 1.73596 * 120.10563 * 180.02562 * 18 17 16 20 20 H 0.96997 * 119.99641 * 4.89869 * 1 2 3 21 21 H 0.97003 * 120.00252 * 207.32367 * 11 10 9 22 22 H 0.97004 * 119.99925 * 27.32613 * 11 10 9 23 23 H 1.07994 * 119.28276 * 179.74661 * 16 12 10 24 24 H 1.08002 * 119.33433 * 180.02562 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2944 0.0000 0.0000 3 14 2.2285 1.6177 0.0000 4 1 3.6886 1.3463 0.0006 5 1 1.8698 2.3963 -1.2125 6 1 1.8697 2.3965 1.2125 7 6 2.0279 -1.2704 0.0006 8 1 3.0627 -1.2964 0.3087 9 6 1.3897 -2.4432 -0.3962 10 6 0.5072 -2.4558 -1.5704 11 7 0.2942 -1.3086 -2.2999 12 6 -0.1098 -3.6491 -1.9299 13 7 -1.0050 -3.6927 -3.1079 14 8 -1.6883 -4.7863 -3.3755 15 8 -1.1181 -2.6381 -3.8885 16 6 0.1113 -4.7914 -1.1904 17 6 0.9458 -4.7851 -0.0781 18 6 1.5779 -3.6495 0.3259 19 17 2.6133 -3.6778 1.7190 20 1 -0.4849 0.8370 -0.0717 21 1 -0.5342 -1.1929 -2.7910 22 1 0.9726 -0.6156 -2.3231 23 1 -0.3776 -5.7101 -1.4787 24 1 1.0952 -5.6998 0.4764 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716057.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:59 Heat of formation + Delta-G solvation = 16.013273 kcal Electronic energy + Delta-G solvation = -15102.014133 eV Core-core repulsion = 12237.552571 eV Total energy + Delta-G solvation = -2864.461562 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69222 -38.87209 -37.05297 -36.12279 -35.38236 -34.55070 -32.37576 -30.47038 -27.03465 -26.83500 -23.09743 -22.61696 -20.04234 -19.03031 -18.40480 -17.92944 -17.75987 -17.00351 -16.65315 -15.65472 -15.46424 -14.80067 -14.22805 -13.72912 -13.43243 -12.98334 -12.84494 -12.78662 -12.47766 -12.12883 -12.00442 -11.82224 -11.68932 -11.42907 -11.25266 -11.04077 -9.80324 -9.07788 -8.56736 -6.45113 -1.39632 0.53428 0.59503 0.68815 1.41077 1.42696 1.56505 1.72947 2.12061 2.35406 2.96169 3.00109 3.87912 4.22685 4.29653 4.65230 4.84747 4.88896 5.10065 5.37488 5.59344 5.80686 6.02228 6.10699 6.23451 6.41046 6.59454 6.81483 7.92614 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.011881 C = 0.007728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.006178 B = 2356.101656 C = 3622.385224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.045 3.955 3 Si 0.979 3.021 4 H -0.252 1.252 5 H -0.253 1.253 6 H -0.271 1.271 7 C -0.448 4.448 8 H 0.106 0.894 9 C 0.066 3.934 10 C 0.265 3.735 11 N -0.786 5.786 12 C -0.057 4.057 13 N 0.029 4.971 14 O -0.292 6.292 15 O -0.271 6.271 16 C -0.205 4.205 17 C -0.069 4.069 18 C -0.141 4.141 19 Cl -0.080 7.080 20 H 0.308 0.692 21 H 0.406 0.594 22 H 0.407 0.593 23 H 0.130 0.870 24 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 3.098 2.242 6.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.182 4.182 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.177 1.177 6 H -0.196 1.196 7 C -0.474 4.474 8 H 0.123 0.877 9 C 0.060 3.940 10 C 0.145 3.855 11 N -0.332 5.332 12 C -0.158 4.158 13 N 0.465 4.535 14 O -0.455 6.455 15 O -0.436 6.436 16 C -0.226 4.226 17 C -0.091 4.091 18 C -0.171 4.171 19 Cl -0.052 7.052 20 H 0.121 0.879 21 H 0.244 0.756 22 H 0.238 0.762 23 H 0.148 0.852 24 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.661 3.192 2.664 6.246 hybrid contribution -0.368 0.746 -0.417 0.931 sum 4.293 3.938 2.247 6.244 Atomic orbital electron populations 1.69091 1.10116 1.33562 1.25197 1.28164 0.94940 1.04159 0.90970 0.85158 0.80128 0.75304 0.79562 1.17456 1.17656 1.19574 1.20722 0.98875 0.90119 1.37679 0.87662 1.18206 0.92947 0.94029 0.88847 1.19454 0.93147 0.84248 0.88696 1.42500 1.22185 1.17947 1.50552 1.20177 1.06207 0.97480 0.91930 1.50444 1.00041 1.00909 1.02117 1.96139 1.48679 1.18720 1.81950 1.95927 1.75556 1.23302 1.48812 1.19734 1.07234 0.96077 0.99583 1.20053 0.96053 0.97511 0.95446 1.20393 1.06576 0.96290 0.93841 1.98226 1.66515 1.98699 1.41721 0.87885 0.75598 0.76160 0.85207 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -30.34 11.67 23.24 0.27 -30.07 14 2 C 0.04 1.68 3.88 87.26 0.34 2.02 14 3 Si 0.98 28.46 29.68 68.60 2.04 30.50 14 4 H -0.25 -7.32 7.11 99.48 0.71 -6.62 14 5 H -0.25 -6.86 7.11 99.48 0.71 -6.15 14 6 H -0.27 -8.03 7.11 99.48 0.71 -7.32 14 7 C -0.45 -18.42 8.11 24.73 0.20 -18.22 14 8 H 0.11 4.24 7.78 -2.91 -0.02 4.22 14 9 C 0.07 2.87 5.49 -19.87 -0.11 2.77 14 10 C 0.27 11.63 6.47 40.70 0.26 11.90 14 11 N -0.79 -30.73 6.53 -47.24 -0.31 -31.04 14 12 C -0.06 -2.63 6.89 36.48 0.25 -2.38 14 13 N 0.03 1.40 4.98 -46.20 -0.23 1.16 14 14 O -0.29 -14.57 19.14 3.51 0.07 -14.50 14 15 O -0.27 -12.68 16.58 3.52 0.06 -12.62 14 16 C -0.20 -8.69 9.54 22.38 0.21 -8.48 14 17 C -0.07 -2.71 9.68 21.97 0.21 -2.49 14 18 C -0.14 -5.81 6.35 22.67 0.14 -5.67 14 19 Cl -0.08 -2.93 27.95 -2.72 -0.08 -3.01 14 20 H 0.31 10.94 8.27 -92.71 -0.77 10.17 14 21 H 0.41 15.93 6.11 -92.71 -0.57 15.36 14 22 H 0.41 14.36 7.20 -92.71 -0.67 13.69 14 23 H 0.13 5.26 7.54 -2.91 -0.02 5.24 14 24 H 0.14 4.67 8.06 -2.91 -0.02 4.65 14 Total: -1.00 -50.28 239.22 3.38 -46.89 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.05 Total: 33.23 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 1.51 Total: -20.56 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.27 Total: -59.94 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: 0.13 Total: -27.12 kcal Atomic # 14 Polarization: 28.46 SS G_CDS: 2.04 Total: 30.50 kcal Atomic # 17 Polarization: -2.93 SS G_CDS: -0.08 Total: -3.01 kcal Total: -50.28 3.38 -46.89 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716057.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.906 kcal (2) G-P(sol) polarization free energy of solvation -50.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds